Wall clock time and date at job start Tue Mar 31 2020 06:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47411 * 300.00030 * 3 2 1 6 6 H 1.48508 * 109.47006 * 59.99450 * 3 2 1 7 7 C 1.37867 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47010 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99931 * 359.97438 * 11 10 9 13 13 O 1.34246 * 119.99878 * 179.97438 * 11 10 9 14 14 C 1.35982 * 117.00116 * 185.38355 * 13 11 10 15 15 C 1.38696 * 120.04042 * 260.97927 * 14 13 11 16 16 C 1.38166 * 120.02812 * 179.97438 * 15 14 13 17 17 C 1.38358 * 120.09770 * 0.24926 * 16 15 14 18 18 Cl 1.73605 * 119.95898 * 179.74367 * 17 16 15 19 19 C 1.38539 * 120.08062 * 359.49927 * 17 16 15 20 20 F 1.35092 * 120.01243 * 180.27903 * 19 17 16 21 21 C 1.38536 * 119.97114 * 0.49608 * 19 17 16 22 22 F 1.35099 * 120.04729 * 179.77160 * 21 19 17 23 23 H 0.96995 * 120.00168 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47051 * 59.99273 * 9 7 2 25 25 H 1.09004 * 109.46764 * 299.99459 * 9 7 2 26 26 H 1.09003 * 109.47072 * 59.99508 * 10 9 7 27 27 H 1.09004 * 109.47037 * 299.99549 * 10 9 7 28 28 H 1.08003 * 119.99100 * 359.95309 * 15 14 13 29 29 H 1.07994 * 119.95393 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2837 -4.9671 0.0020 13 8 2.1633 -6.1297 0.0008 14 6 1.4273 -7.2675 -0.1123 15 6 1.1136 -8.0067 1.0185 16 6 0.3653 -9.1625 0.9034 17 6 -0.0680 -9.5876 -0.3399 18 17 -1.0024 -11.0439 -0.4811 19 6 0.2384 -8.8497 -1.4717 20 9 -0.1902 -9.2630 -2.6843 21 6 0.9884 -7.6903 -1.3599 22 9 1.2921 -6.9720 -2.4631 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 1.4546 -7.6790 1.9895 29 1 0.1221 -9.7374 1.7847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841312487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:04 Heat of formation + Delta-G solvation = -153.149938 kcal Electronic energy + Delta-G solvation = -19999.419819 eV Core-core repulsion = 16164.029041 eV Total energy + Delta-G solvation = -3835.390778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.79150 -48.85908 -41.20742 -38.96642 -37.20250 -36.48508 -33.71658 -31.41758 -30.94328 -30.27564 -26.37132 -24.06473 -23.57488 -22.20486 -20.33206 -18.72084 -18.19940 -17.95127 -17.36025 -16.70343 -16.49048 -15.87451 -15.75357 -15.42795 -15.19843 -14.62794 -14.53409 -14.02834 -13.53005 -13.35410 -13.21958 -12.63438 -12.42049 -12.26900 -11.70426 -11.50053 -11.34645 -11.14637 -11.02766 -10.69038 -10.29338 -10.18381 -9.77746 -9.26799 -9.25195 -9.04612 -8.45076 -6.08351 -4.14017 0.20610 0.40696 1.44258 2.34660 2.50342 3.01479 3.27190 3.31487 3.35201 3.38406 3.90105 4.14686 4.27735 4.38262 4.64611 4.88065 5.27476 5.29446 5.40050 5.45228 5.52874 5.94103 5.94881 6.07338 6.46459 6.65074 7.56742 7.60714 7.88673 7.98530 8.24713 8.92721 9.50807 11.02588 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.038430 B = 0.003187 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.430857 B = 8784.907373 C = 8917.026531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.098 4.098 11 C 0.455 3.545 12 O -0.479 6.479 13 O -0.295 6.295 14 C 0.098 3.902 15 C -0.091 4.091 16 C -0.077 4.077 17 C -0.054 4.054 18 Cl -0.033 7.033 19 C 0.090 3.910 20 F -0.111 7.111 21 C 0.074 3.926 22 F -0.109 7.109 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -21.336 1.730 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.135 4.135 11 C 0.299 3.701 12 O -0.362 6.362 13 O -0.212 6.212 14 C 0.054 3.946 15 C -0.109 4.109 16 C -0.095 4.095 17 C -0.082 4.082 18 Cl -0.004 7.004 19 C 0.069 3.931 20 F -0.089 7.089 21 C 0.052 3.948 22 F -0.087 7.087 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.178 0.822 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.760 -21.324 1.629 21.458 hybrid contribution 0.184 0.775 -0.563 0.975 sum 1.944 -20.549 1.066 20.668 Atomic orbital electron populations 1.69997 1.06124 1.26813 1.49704 1.25024 0.94876 0.99435 0.94977 0.86459 0.80005 0.83393 0.77670 1.19591 1.20919 1.20924 1.21144 0.93153 0.90402 1.52111 0.92093 1.19082 0.93196 0.89142 0.99115 1.21902 1.00871 0.86107 1.04660 1.25575 0.88407 0.84593 0.71487 1.90699 1.15556 1.86430 1.43491 1.84846 1.39210 1.12812 1.84317 1.18439 0.96198 0.89036 0.90881 1.21226 0.96766 0.94418 0.98511 1.20903 0.96557 0.96195 0.95889 1.20781 1.01534 0.92356 0.93519 1.98408 1.70775 1.32963 1.98274 1.17032 1.00484 0.94242 0.81363 1.91585 1.87530 1.89340 1.40446 1.17721 1.01032 0.91868 0.84138 1.91597 1.90891 1.76158 1.50061 0.92797 0.95437 0.95382 0.88239 0.88247 0.82202 0.82269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.53 -14.37 9.11 -34.44 -0.31 -14.69 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.03 0.81 4.26 -27.88 -0.12 0.69 15 10 C -0.10 -1.89 5.75 -27.88 -0.16 -2.05 15 11 C 0.46 8.55 7.86 36.00 0.28 8.84 15 12 O -0.48 -10.52 15.72 -18.75 -0.29 -10.81 15 13 O -0.29 -4.66 9.89 -23.75 -0.23 -4.89 15 14 C 0.10 1.38 4.96 -39.19 -0.19 1.19 15 15 C -0.09 -0.94 9.98 -39.44 -0.39 -1.33 15 16 C -0.08 -0.67 9.82 -39.56 -0.39 -1.06 15 17 C -0.05 -0.57 6.33 -39.43 -0.25 -0.82 15 18 Cl -0.03 -0.31 28.61 -51.86 -1.48 -1.80 15 19 C 0.09 1.17 7.28 -39.36 -0.29 0.89 15 20 F -0.11 -1.50 16.75 2.25 0.04 -1.46 15 21 C 0.07 1.09 7.25 -39.25 -0.28 0.80 15 22 F -0.11 -1.81 17.03 2.25 0.04 -1.77 15 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 24 H 0.03 0.76 8.10 -51.93 -0.42 0.34 15 25 H 0.03 0.77 8.10 -51.93 -0.42 0.35 15 26 H 0.10 1.69 8.14 -51.93 -0.42 1.27 15 27 H 0.10 1.76 8.14 -51.93 -0.42 1.34 15 28 H 0.16 1.26 8.06 -52.48 -0.42 0.84 15 29 H 0.16 0.85 8.06 -52.49 -0.42 0.43 15 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -31.38 294.84 -6.06 -37.44 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -2.07 Total: -5.43 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.20 Total: -5.98 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.53 Total: -15.70 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.48 Total: -1.80 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.38 -6.06 -37.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841312487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.712 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds