Wall clock time and date at job start Tue Mar 31 2020 06:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47411 * 300.00030 * 3 2 1 6 6 H 1.48508 * 109.47006 * 59.99450 * 3 2 1 7 7 C 1.37867 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47010 * 179.97438 * 10 9 7 12 12 O 1.20831 * 119.99931 * 359.97438 * 11 10 9 13 13 O 1.34246 * 119.99878 * 179.97438 * 11 10 9 14 14 C 1.35982 * 117.00116 * 185.38355 * 13 11 10 15 15 C 1.38696 * 120.04042 * 260.97927 * 14 13 11 16 16 C 1.38166 * 120.02812 * 179.97438 * 15 14 13 17 17 C 1.38358 * 120.09770 * 0.24926 * 16 15 14 18 18 Cl 1.73605 * 119.95898 * 179.74367 * 17 16 15 19 19 C 1.38539 * 120.08062 * 359.49927 * 17 16 15 20 20 F 1.35092 * 120.01243 * 180.27903 * 19 17 16 21 21 C 1.38536 * 119.97114 * 0.49608 * 19 17 16 22 22 F 1.35099 * 120.04729 * 179.77160 * 21 19 17 23 23 H 0.96995 * 120.00168 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47051 * 59.99273 * 9 7 2 25 25 H 1.09004 * 109.46764 * 299.99459 * 9 7 2 26 26 H 1.09003 * 109.47072 * 59.99508 * 10 9 7 27 27 H 1.09004 * 109.47037 * 299.99549 * 10 9 7 28 28 H 1.08003 * 119.99100 * 359.95309 * 15 14 13 29 29 H 1.07994 * 119.95393 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4920 -4.9671 0.0012 12 8 0.2837 -4.9671 0.0020 13 8 2.1633 -6.1297 0.0008 14 6 1.4273 -7.2675 -0.1123 15 6 1.1136 -8.0067 1.0185 16 6 0.3653 -9.1625 0.9034 17 6 -0.0680 -9.5876 -0.3399 18 17 -1.0024 -11.0439 -0.4811 19 6 0.2384 -8.8497 -1.4717 20 9 -0.1902 -9.2630 -2.6843 21 6 0.9884 -7.6903 -1.3599 22 9 1.2921 -6.9720 -2.4631 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 1.4546 -7.6790 1.9895 29 1 0.1221 -9.7374 1.7847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841312487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:04 Heat of formation + Delta-G solvation = -170.333178 kcal Electronic energy + Delta-G solvation = -20000.164941 eV Core-core repulsion = 16164.029041 eV Total energy + Delta-G solvation = -3836.135899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.88222 -49.96449 -42.50201 -40.03926 -38.36300 -37.52474 -35.69980 -33.26737 -31.86632 -31.36882 -28.20692 -25.47047 -24.51643 -23.70409 -21.90114 -19.92332 -19.33546 -19.06519 -18.85411 -18.02413 -17.76335 -17.26728 -17.16102 -16.49198 -16.42481 -16.35781 -15.71098 -15.17499 -15.01888 -14.52688 -14.29653 -14.19376 -13.82080 -13.40839 -13.35875 -12.87602 -12.60758 -12.48098 -12.37048 -12.29480 -12.04692 -11.85834 -11.64482 -11.30379 -10.59662 -10.20621 -10.04497 -8.21047 -6.34767 -0.77341 -0.52608 0.58830 0.92919 1.32952 1.44860 1.45502 1.58813 2.00661 2.30548 2.43255 2.92329 3.13494 3.20304 3.37169 3.57434 3.97495 4.11677 4.39045 4.40704 4.55363 4.57491 4.66676 4.84135 5.02243 5.29618 5.45845 5.51212 5.78687 6.10385 6.59467 6.83529 7.35900 8.91676 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.038430 B = 0.003187 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.430857 B = 8784.907373 C = 8917.026531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.252 1.252 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.037 3.963 10 C -0.090 4.090 11 C 0.464 3.536 12 O -0.519 6.519 13 O -0.282 6.282 14 C 0.064 3.936 15 C -0.076 4.076 16 C -0.054 4.054 17 C -0.048 4.048 18 Cl -0.018 7.018 19 C 0.075 3.925 20 F -0.120 7.120 21 C 0.046 3.954 22 F -0.130 7.130 23 H 0.264 0.736 24 H -0.013 1.013 25 H -0.004 1.004 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.192 0.808 29 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -22.443 3.322 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.127 4.127 11 C 0.310 3.690 12 O -0.405 6.405 13 O -0.198 6.198 14 C 0.021 3.979 15 C -0.094 4.094 16 C -0.072 4.072 17 C -0.076 4.076 18 Cl 0.012 6.988 19 C 0.054 3.946 20 F -0.098 7.098 21 C 0.025 3.975 22 F -0.109 7.109 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.015 0.985 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.209 0.791 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.296 -22.467 3.220 22.934 hybrid contribution -0.344 0.926 -1.031 1.428 sum 2.952 -21.541 2.189 21.852 Atomic orbital electron populations 1.70160 1.08231 1.27892 1.51263 1.26091 0.95718 1.03880 0.94532 0.85261 0.79372 0.78073 0.77475 1.17546 1.20913 1.20573 1.21654 0.94228 0.91062 1.51044 0.90153 1.18843 0.93691 0.91822 0.95690 1.21639 0.99448 0.84492 1.07083 1.25282 0.87612 0.85580 0.70511 1.90684 1.17182 1.87224 1.45439 1.84784 1.38706 1.12620 1.83698 1.18855 0.98183 0.88941 0.91942 1.21650 0.95389 0.93917 0.98421 1.21424 0.94139 0.95236 0.96440 1.21011 1.00842 0.92374 0.93400 1.98421 1.70277 1.31857 1.98282 1.17205 1.01004 0.94466 0.81906 1.91555 1.87677 1.89382 1.41177 1.18074 1.02621 0.92835 0.84005 1.91527 1.91313 1.76853 1.51173 0.92769 0.99440 0.98536 0.85147 0.86316 0.79104 0.77761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.29 21.44 0.28 -57.09 15 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 15 3 Si 0.97 42.97 29.54 68.60 2.03 44.99 15 4 H -0.25 -10.24 7.11 99.48 0.71 -9.53 15 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 7 C -0.54 -29.42 9.11 25.60 0.23 -29.19 15 8 H 0.08 3.95 7.74 -2.91 -0.02 3.93 15 9 C 0.04 1.93 4.26 29.85 0.13 2.06 15 10 C -0.09 -3.41 5.75 29.85 0.17 -3.24 15 11 C 0.46 17.52 7.86 71.23 0.56 18.08 15 12 O -0.52 -23.51 15.72 21.95 0.34 -23.17 15 13 O -0.28 -8.70 9.89 4.06 0.04 -8.66 15 14 C 0.06 1.75 4.96 22.52 0.11 1.86 15 15 C -0.08 -1.34 9.98 22.36 0.22 -1.12 15 16 C -0.05 -0.74 9.82 22.28 0.22 -0.53 15 17 C -0.05 -0.92 6.33 22.37 0.14 -0.78 15 18 Cl -0.02 -0.29 28.61 -2.72 -0.08 -0.37 15 19 C 0.08 1.94 7.28 22.41 0.16 2.11 15 20 F -0.12 -3.29 16.75 44.97 0.75 -2.53 15 21 C 0.05 1.37 7.25 22.49 0.16 1.53 15 22 F -0.13 -4.55 17.03 44.97 0.77 -3.78 15 23 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 24 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 15 25 H 0.00 -0.22 8.10 -2.38 -0.02 -0.24 15 26 H 0.13 4.15 8.14 -2.39 -0.02 4.13 15 27 H 0.12 4.07 8.14 -2.38 -0.02 4.05 15 28 H 0.19 2.19 8.06 -2.91 -0.02 2.17 15 29 H 0.21 1.00 8.06 -2.91 -0.02 0.98 15 Total: -1.00 -71.54 294.84 7.92 -63.62 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: 1.20 Total: -4.02 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 2.58 Total: -9.00 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: 0.39 Total: -31.83 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 1.52 Total: -6.32 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -71.54 7.92 -63.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841312487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.709 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds