Wall clock time and date at job start Tue Mar 31 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86792 * 120.00158 * 2 1 4 4 H 1.48506 * 109.47180 * 239.99998 * 3 2 1 5 5 H 1.48505 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47524 * 120.00124 * 3 2 1 7 7 C 1.38754 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99618 * 179.97438 * 7 2 1 9 9 O 1.34918 * 120.00759 * 0.02562 * 7 2 1 10 10 C 1.34304 * 117.00344 * 179.97438 * 9 7 2 11 11 O 1.21211 * 120.00255 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99892 * 180.02562 * 10 9 7 13 13 O 1.42908 * 109.46927 * 180.02562 * 12 10 9 14 14 C 1.35949 * 116.99711 * 179.97438 * 13 12 10 15 15 C 1.38795 * 120.06449 * 89.99509 * 14 13 12 16 16 Cl 1.73602 * 120.02971 * 359.70216 * 15 14 13 17 17 C 1.38259 * 119.93736 * 179.97438 * 15 14 13 18 18 C 1.38261 * 120.06498 * 0.02602 * 17 15 14 19 19 C 1.38259 * 120.12483 * 359.95475 * 18 17 15 20 20 C 1.38264 * 120.06459 * 0.04246 * 19 18 17 21 21 Cl 1.73595 * 120.03396 * 180.02562 * 20 19 18 22 22 H 0.97001 * 119.99877 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47433 * 59.99662 * 12 10 9 24 24 H 1.09001 * 109.46950 * 299.98922 * 12 10 9 25 25 H 1.08001 * 119.97088 * 179.97438 * 17 15 14 26 26 H 1.07996 * 119.93703 * 179.97438 * 18 17 15 27 27 H 1.07995 * 119.96920 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2835 2.7464 -0.0006 6 1 3.1022 1.6964 1.2124 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3335 -2.3702 0.0005 10 6 2.0650 -3.4965 0.0005 11 8 3.2754 -3.4332 0.0001 12 6 1.3807 -4.8393 0.0000 13 8 2.3649 -5.8754 0.0007 14 6 1.9117 -7.1571 0.0008 15 6 1.6803 -7.8130 -1.2003 16 17 1.9621 -6.9947 -2.7053 17 6 1.2199 -9.1166 -1.1971 18 6 0.9894 -9.7669 0.0011 19 6 1.2193 -9.1162 1.1991 20 6 1.6799 -7.8125 1.2020 21 17 1.9690 -6.9965 2.7068 22 1 -0.4850 0.8401 -0.0004 23 1 0.7582 -4.9295 -0.8902 24 1 0.7578 -4.9300 0.8898 25 1 1.0392 -9.6273 -2.1315 26 1 0.6293 -10.7850 0.0012 27 1 1.0389 -9.6266 2.1336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849201575.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:33 Heat of formation + Delta-G solvation = -96.291390 kcal Electronic energy + Delta-G solvation = -17922.550308 eV Core-core repulsion = 14505.588687 eV Total energy + Delta-G solvation = -3416.961621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25110 -38.95437 -37.42389 -36.82112 -36.33346 -35.02959 -32.16199 -30.92173 -30.53801 -28.11739 -25.07859 -23.17375 -22.73865 -20.43406 -18.37126 -17.69931 -16.93987 -16.81315 -16.51900 -15.40114 -15.07026 -14.83603 -14.57967 -14.32832 -14.02369 -13.37955 -13.14723 -12.64365 -12.43462 -12.06184 -12.02820 -11.58677 -11.24219 -11.20329 -11.09047 -11.05769 -10.46217 -10.42864 -9.92691 -9.84552 -9.00383 -8.98726 -8.90763 -8.58195 -6.41730 -4.10016 0.64584 0.68631 1.73342 2.15269 2.86990 3.13066 3.19063 3.22860 3.39816 3.48385 4.05329 4.44194 4.60742 4.69384 4.81821 5.03532 5.06463 5.09830 5.44904 5.54453 5.65212 5.75989 5.86569 6.12410 6.56839 7.31487 7.39752 7.93807 8.68897 9.06619 9.80946 10.76122 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.004391 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.048878 B = 6375.782725 C = 7142.522319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.381 4.381 8 H 0.097 0.903 9 O -0.211 6.211 10 C 0.402 3.598 11 O -0.531 6.531 12 C 0.087 3.913 13 O -0.295 6.295 14 C 0.120 3.880 15 C -0.047 4.047 16 Cl -0.039 7.039 17 C -0.097 4.097 18 C -0.104 4.104 19 C -0.097 4.097 20 C -0.047 4.047 21 Cl -0.039 7.039 22 H 0.270 0.730 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -19.750 0.003 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.161 4.161 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.457 4.457 8 H 0.115 0.885 9 O -0.119 6.119 10 C 0.247 3.753 11 O -0.426 6.426 12 C 0.012 3.988 13 O -0.211 6.211 14 C 0.074 3.926 15 C -0.074 4.074 16 Cl -0.010 7.010 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.115 4.115 20 C -0.074 4.074 21 Cl -0.009 7.009 22 H 0.080 0.920 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.161 0.839 26 H 0.161 0.839 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.270 -19.318 0.002 19.360 hybrid contribution 0.253 0.834 -0.001 0.871 sum -1.017 -18.484 0.001 18.512 Atomic orbital electron populations 1.69987 1.05980 1.27856 1.46436 1.25337 0.95862 0.98786 0.96139 0.85709 0.78600 0.79234 0.79424 1.19423 1.20347 1.19416 1.21199 0.92468 0.79376 1.52692 0.88538 1.83834 1.39050 1.12941 1.76058 1.22338 0.86737 0.86373 0.79840 1.90600 1.15226 1.87638 1.49141 1.21776 0.89420 0.84169 1.03390 1.86137 1.31300 1.09708 1.93978 1.18211 0.97833 0.86878 0.89669 1.21357 1.03710 0.94772 0.87602 1.98419 1.94509 1.78772 1.29253 1.21114 0.98455 0.92155 0.99824 1.21089 0.99877 1.00468 0.90841 1.21114 0.98473 0.92135 0.99825 1.21358 1.03691 0.94791 0.87603 1.98418 1.94367 1.78895 1.29264 0.91972 0.89602 0.89615 0.83871 0.83861 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.43 13.67 55.48 0.76 -24.67 15 2 C 0.04 1.21 5.49 -17.53 -0.10 1.12 15 3 Si 0.95 21.53 29.55 -169.99 -5.02 16.51 15 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.38 -11.44 9.65 30.92 0.30 -11.14 15 8 H 0.10 2.91 6.86 -52.48 -0.36 2.55 15 9 O -0.21 -6.14 9.75 -20.68 -0.20 -6.34 15 10 C 0.40 10.37 7.98 36.01 0.29 10.66 15 11 O -0.53 -15.12 15.74 -25.78 -0.41 -15.52 15 12 C 0.09 1.72 6.65 36.01 0.24 1.96 15 13 O -0.30 -5.62 8.51 -39.50 -0.34 -5.96 15 14 C 0.12 1.82 5.71 -39.17 -0.22 1.60 15 15 C -0.05 -0.61 6.33 -39.37 -0.25 -0.86 15 16 Cl -0.04 -0.54 28.50 -51.86 -1.48 -2.02 15 17 C -0.10 -0.90 9.83 -39.57 -0.39 -1.29 15 18 C -0.10 -0.81 10.04 -39.57 -0.40 -1.20 15 19 C -0.10 -0.90 9.83 -39.56 -0.39 -1.29 15 20 C -0.05 -0.61 6.33 -39.37 -0.25 -0.86 15 21 Cl -0.04 -0.54 28.50 -51.86 -1.48 -2.02 15 22 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 23 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 24 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.14 0.97 8.06 -52.49 -0.42 0.55 15 26 H 0.14 0.62 8.06 -52.49 -0.42 0.19 15 27 H 0.14 0.97 8.06 -52.49 -0.42 0.55 15 LS Contribution 289.00 15.07 4.36 4.36 Total: -1.00 -34.20 289.00 -6.59 -40.79 By element: Atomic # 1 Polarization: -2.22 SS G_CDS: -1.61 Total: -3.83 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.17 Total: -1.29 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.67 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.94 Total: -27.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.96 Total: -4.04 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.20 -6.59 -40.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849201575.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.504 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds