Wall clock time and date at job start Tue Mar 31 2020 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86792 * 120.00158 * 2 1 4 4 H 1.48506 * 109.47180 * 239.99998 * 3 2 1 5 5 H 1.48505 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47524 * 120.00124 * 3 2 1 7 7 C 1.38754 * 119.99403 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99618 * 179.97438 * 7 2 1 9 9 O 1.34918 * 120.00759 * 0.02562 * 7 2 1 10 10 C 1.34304 * 117.00344 * 179.97438 * 9 7 2 11 11 O 1.21211 * 120.00255 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99892 * 180.02562 * 10 9 7 13 13 O 1.42908 * 109.46927 * 180.02562 * 12 10 9 14 14 C 1.35949 * 116.99711 * 179.97438 * 13 12 10 15 15 C 1.38795 * 120.06449 * 89.99509 * 14 13 12 16 16 Cl 1.73602 * 120.02971 * 359.70216 * 15 14 13 17 17 C 1.38259 * 119.93736 * 179.97438 * 15 14 13 18 18 C 1.38261 * 120.06498 * 0.02602 * 17 15 14 19 19 C 1.38259 * 120.12483 * 359.95475 * 18 17 15 20 20 C 1.38264 * 120.06459 * 0.04246 * 19 18 17 21 21 Cl 1.73595 * 120.03396 * 180.02562 * 20 19 18 22 22 H 0.97001 * 119.99877 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47433 * 59.99662 * 12 10 9 24 24 H 1.09001 * 109.46950 * 299.98922 * 12 10 9 25 25 H 1.08001 * 119.97088 * 179.97438 * 17 15 14 26 26 H 1.07996 * 119.93703 * 179.97438 * 18 17 15 27 27 H 1.07995 * 119.96920 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6176 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2835 2.7464 -0.0006 6 1 3.1022 1.6964 1.2124 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2018 0.0001 9 8 1.3335 -2.3702 0.0005 10 6 2.0650 -3.4965 0.0005 11 8 3.2754 -3.4332 0.0001 12 6 1.3807 -4.8393 0.0000 13 8 2.3649 -5.8754 0.0007 14 6 1.9117 -7.1571 0.0008 15 6 1.6803 -7.8130 -1.2003 16 17 1.9621 -6.9947 -2.7053 17 6 1.2199 -9.1166 -1.1971 18 6 0.9894 -9.7669 0.0011 19 6 1.2193 -9.1162 1.1991 20 6 1.6799 -7.8125 1.2020 21 17 1.9690 -6.9965 2.7068 22 1 -0.4850 0.8401 -0.0004 23 1 0.7582 -4.9295 -0.8902 24 1 0.7578 -4.9300 0.8898 25 1 1.0392 -9.6273 -2.1315 26 1 0.6293 -10.7850 0.0012 27 1 1.0389 -9.6266 2.1336 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849201575.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:33 Heat of formation + Delta-G solvation = -117.280224 kcal Electronic energy + Delta-G solvation = -17923.460452 eV Core-core repulsion = 14505.588687 eV Total energy + Delta-G solvation = -3417.871765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 289.994 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.48496 -40.81824 -38.69017 -37.82480 -37.32023 -37.15853 -34.36549 -31.75973 -31.66143 -29.66110 -27.19237 -24.03190 -23.72221 -22.36520 -20.00101 -19.44917 -18.58175 -17.96689 -17.74055 -17.10187 -16.82222 -16.28990 -15.86032 -15.47850 -15.38374 -14.97108 -14.53222 -13.89012 -13.65150 -13.45351 -13.37532 -13.22113 -12.86502 -12.42455 -12.20338 -12.18812 -12.15384 -12.10254 -12.05323 -11.24602 -11.11603 -10.73815 -9.86379 -9.86120 -8.58288 -6.39180 -0.28768 -0.14085 0.76804 1.19097 1.23720 1.30838 1.46832 1.56152 1.68909 2.20188 2.39242 2.92308 3.00348 3.68464 3.81908 3.85965 4.06783 4.06932 4.15284 4.29066 4.54570 4.89780 4.98637 5.10973 5.12453 5.44642 5.77028 6.05147 6.55347 6.85779 7.64573 8.61957 Molecular weight = 289.99amu Principal moments of inertia in cm(-1) A = 0.023153 B = 0.004391 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.048878 B = 6375.782725 C = 7142.522319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.000 4.000 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.261 1.261 7 C -0.424 4.424 8 H 0.082 0.918 9 O -0.236 6.236 10 C 0.400 3.600 11 O -0.564 6.564 12 C 0.103 3.897 13 O -0.318 6.318 14 C 0.078 3.922 15 C -0.059 4.059 16 Cl -0.059 7.059 17 C -0.087 4.087 18 C -0.078 4.078 19 C -0.087 4.087 20 C -0.059 4.059 21 Cl -0.059 7.059 22 H 0.281 0.719 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.174 0.826 26 H 0.193 0.807 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -21.690 0.003 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.201 4.201 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.100 0.900 9 O -0.144 6.144 10 C 0.247 3.753 11 O -0.461 6.461 12 C 0.028 3.972 13 O -0.235 6.235 14 C 0.033 3.967 15 C -0.087 4.087 16 Cl -0.030 7.030 17 C -0.106 4.106 18 C -0.095 4.095 19 C -0.106 4.106 20 C -0.087 4.087 21 Cl -0.030 7.030 22 H 0.091 0.909 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.191 0.809 26 H 0.211 0.789 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.090 -21.295 0.003 21.398 hybrid contribution 0.455 1.180 -0.001 1.265 sum -1.635 -20.115 0.001 20.181 Atomic orbital electron populations 1.70061 1.07580 1.29679 1.46267 1.26560 0.96963 1.02186 0.94413 0.84675 0.77644 0.74126 0.79833 1.18603 1.18001 1.18593 1.21419 0.92292 0.80677 1.55546 0.89985 1.83848 1.39896 1.13781 1.76899 1.23502 0.86649 0.87630 0.77560 1.90555 1.16899 1.88300 1.50325 1.21603 0.89069 0.81676 1.04816 1.86119 1.31693 1.11285 1.94406 1.18523 1.01454 0.85326 0.91400 1.21558 1.04920 0.96080 0.86093 1.98409 1.94766 1.79541 1.30307 1.21560 0.96536 0.90471 1.02026 1.21679 0.96777 1.01959 0.89132 1.21560 0.96555 0.90452 1.02027 1.21557 1.04899 0.96102 0.86095 1.98408 1.94628 1.79661 1.30319 0.90941 0.87960 0.87970 0.80894 0.78940 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.39 13.67 21.62 0.30 -53.10 15 2 C 0.00 -0.03 5.49 84.87 0.47 0.44 15 3 Si 1.02 44.04 29.55 68.60 2.03 46.07 15 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 5 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 7 C -0.42 -26.42 9.65 67.94 0.66 -25.76 15 8 H 0.08 5.20 6.86 -2.91 -0.02 5.18 15 9 O -0.24 -14.32 9.75 14.96 0.15 -14.18 15 10 C 0.40 21.57 7.98 71.24 0.57 22.14 15 11 O -0.56 -33.73 15.74 27.21 0.43 -33.30 15 12 C 0.10 4.20 6.65 71.24 0.47 4.67 15 13 O -0.32 -12.45 8.51 -73.94 -0.63 -13.08 15 14 C 0.08 2.33 5.71 22.53 0.13 2.46 15 15 C -0.06 -1.45 6.33 22.41 0.14 -1.31 15 16 Cl -0.06 -1.65 28.50 -2.72 -0.08 -1.73 15 17 C -0.09 -1.30 9.83 22.28 0.22 -1.08 15 18 C -0.08 -0.79 10.04 22.28 0.22 -0.57 15 19 C -0.09 -1.30 9.83 22.28 0.22 -1.08 15 20 C -0.06 -1.46 6.33 22.41 0.14 -1.31 15 21 Cl -0.06 -1.65 28.50 -2.72 -0.08 -1.73 15 22 H 0.28 15.08 8.31 -92.71 -0.77 14.31 15 23 H 0.10 3.76 8.14 -2.39 -0.02 3.74 15 24 H 0.10 3.75 8.14 -2.39 -0.02 3.73 15 25 H 0.17 1.54 8.06 -2.91 -0.02 1.52 15 26 H 0.19 0.21 8.06 -2.91 -0.02 0.18 15 27 H 0.17 1.54 8.06 -2.91 -0.02 1.52 15 Total: -1.00 -78.64 289.00 6.57 -72.07 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.22 Total: 0.37 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 3.24 Total: -1.40 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.30 Total: -53.10 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -0.06 Total: -60.56 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.16 Total: -3.46 kcal Total: -78.64 6.57 -72.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849201575.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.214 kcal (2) G-P(sol) polarization free energy of solvation -78.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds