Wall clock time and date at job start Tue Mar 31 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 Br 1.96598 * 115.56031 * 2 1 4 4 C 1.52993 * 117.49816 * 145.69142 * 2 1 3 5 5 C 1.52994 * 60.00248 * 107.48488 * 4 2 1 6 6 H 1.09000 * 117.49837 * 252.48477 * 5 4 2 7 7 C 1.53001 * 117.49462 * 107.48570 * 5 4 2 8 8 O 1.45200 * 109.46814 * 116.39441 * 7 5 4 9 9 C 1.34233 * 117.00003 * 179.97438 * 8 7 5 10 10 O 1.20823 * 119.99744 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99818 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.46653 * 180.02562 * 11 9 8 13 13 C 1.50708 * 109.46973 * 179.97438 * 12 11 9 14 14 H 1.07991 * 119.99789 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00008 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00089 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 H 1.08990 * 109.47322 * 205.69108 * 1 2 3 22 22 H 1.09005 * 109.46859 * 325.69050 * 1 2 3 23 23 H 1.09003 * 109.47004 * 85.68973 * 1 2 3 24 24 H 1.08999 * 117.49924 * 359.97438 * 4 2 1 25 25 H 1.09001 * 117.51662 * 214.97370 * 4 2 1 26 26 H 1.08992 * 109.47812 * 356.39380 * 7 5 4 27 27 H 1.08997 * 109.47082 * 236.38657 * 7 5 4 28 28 H 1.08996 * 109.47057 * 60.00550 * 11 9 8 29 29 H 1.08996 * 109.47084 * 299.99586 * 11 9 8 30 30 H 1.08994 * 109.48028 * 59.99997 * 12 11 9 31 31 H 1.09000 * 109.47206 * 299.99851 * 12 11 9 32 32 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3783 1.7736 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 1.6114 -1.8588 -1.2683 7 6 3.5490 -0.7759 -1.4714 8 8 4.0042 -1.9242 -2.2347 9 6 5.1507 -1.7855 -2.9189 10 8 5.7541 -0.7394 -2.8809 11 6 5.6858 -2.9350 -3.7335 12 6 6.9941 -2.5168 -4.4074 13 6 7.5296 -3.6665 -5.2216 14 1 6.9905 -4.6015 -5.2552 15 6 8.7073 -3.5240 -5.9242 16 7 9.1744 -4.5271 -6.6351 17 14 9.6395 -1.9063 -5.8666 18 1 9.1679 -1.0238 -6.9639 19 1 11.0924 -2.1660 -6.0301 20 1 9.3993 -1.2428 -4.5599 21 1 -0.3633 -0.9260 0.4455 22 1 -0.3633 0.8489 0.5793 23 1 -0.3633 0.0772 -1.0248 24 1 1.6112 -1.8582 1.2685 25 1 3.1716 -0.8755 1.2683 26 1 4.3022 -0.5111 -0.7296 27 1 3.3890 0.0669 -2.1438 28 1 4.9565 -3.2111 -4.4950 29 1 5.8703 -3.7881 -3.0806 30 1 7.7233 -2.2408 -3.6458 31 1 6.8100 -1.6635 -5.0602 32 1 10.0031 -4.4269 -7.1291 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861328741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:14 Heat of formation + Delta-G solvation = -93.807633 kcal Electronic energy + Delta-G solvation = -15150.357994 eV Core-core repulsion = 12350.033416 eV Total energy + Delta-G solvation = -2800.324578 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.54998 -39.29804 -37.42958 -35.63710 -33.45982 -31.33335 -30.42968 -28.77918 -27.42188 -23.77340 -22.33220 -21.54570 -20.69919 -19.33065 -18.42534 -17.74170 -17.32379 -16.29307 -15.93697 -15.61342 -15.28381 -14.77405 -14.41616 -14.24439 -14.01359 -13.45662 -13.23534 -12.95050 -12.67603 -12.51298 -12.24314 -12.07620 -12.04165 -11.96681 -11.80398 -11.47990 -11.39510 -11.25418 -10.82530 -10.78954 -10.53653 -8.32142 -6.36137 0.54349 1.19117 1.33937 1.36224 1.49744 1.53685 2.34208 2.39322 3.03369 3.32538 3.45892 3.57034 3.96244 4.03204 4.17641 4.30492 4.36371 4.40633 4.63009 4.74338 4.78108 4.79956 4.85206 5.02103 5.18025 5.25739 5.36011 5.36940 5.58623 6.21211 6.68418 6.78213 7.29114 8.83390 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.038307 B = 0.003309 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.761197 B = 8458.953361 C = 9031.987013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 Br -0.136 7.136 4 C -0.134 4.134 5 C -0.136 4.136 6 H 0.146 0.854 7 C 0.088 3.912 8 O -0.351 6.351 9 C 0.468 3.532 10 O -0.542 6.542 11 C -0.090 4.090 12 C 0.001 3.999 13 C -0.531 4.531 14 H 0.053 0.947 15 C 0.015 3.985 16 N -0.942 5.942 17 Si 0.937 3.063 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.259 1.259 21 H 0.095 0.905 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.142 0.858 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.017 0.983 31 H 0.015 0.985 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.133 10.540 18.083 29.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.165 4.165 3 Br -0.055 7.055 4 C -0.172 4.172 5 C -0.155 4.155 6 H 0.164 0.836 7 C 0.014 3.986 8 O -0.268 6.268 9 C 0.313 3.687 10 O -0.432 6.432 11 C -0.127 4.127 12 C -0.037 4.037 13 C -0.569 4.569 14 H 0.071 0.929 15 C -0.183 4.183 16 N -0.582 5.582 17 Si 0.762 3.238 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.183 1.183 21 H 0.114 0.886 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.160 0.840 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.035 0.965 31 H 0.033 0.967 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.556 11.442 18.014 29.631 hybrid contribution 0.783 0.460 -0.364 0.978 sum -19.774 11.902 17.649 29.054 Atomic orbital electron populations 1.21567 0.86610 1.04667 1.03902 1.25285 0.97825 0.84121 1.09287 1.97417 1.82575 1.26482 1.99052 1.23800 1.02804 0.97797 0.92774 1.22490 0.96517 1.00780 0.95706 0.83601 1.22704 0.95147 0.86467 0.94301 1.86482 1.39279 1.42573 1.58435 1.24410 0.77782 0.89724 0.76791 1.90624 1.59162 1.31200 1.62187 1.21346 0.98422 0.94276 0.98695 1.19335 0.93091 0.95860 0.95420 1.21339 1.07675 0.99426 1.28436 0.92864 1.25784 0.98250 0.99780 0.94455 1.70015 1.22538 1.33374 1.32281 0.85844 0.77974 0.80314 0.79690 1.19300 1.20387 1.18348 0.88586 0.90556 0.90787 0.84006 0.87836 0.91402 0.91320 0.86611 0.86601 0.96509 0.96660 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.92 71.98 0.71 -0.31 16 2 C -0.09 -1.27 3.10 -10.79 -0.03 -1.30 16 3 Br -0.14 -2.69 32.65 -20.37 -0.67 -3.35 16 4 C -0.13 -1.68 9.64 30.59 0.29 -1.39 16 5 C -0.14 -2.27 5.79 -10.80 -0.06 -2.33 16 6 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 7 C 0.09 2.20 4.70 71.98 0.34 2.54 16 8 O -0.35 -10.42 10.22 -51.44 -0.53 -10.95 16 9 C 0.47 16.99 7.96 71.24 0.57 17.56 16 10 O -0.54 -23.15 15.73 21.97 0.35 -22.80 16 11 C -0.09 -3.39 5.75 29.85 0.17 -3.22 16 12 C 0.00 0.03 3.33 29.85 0.10 0.13 16 13 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 14 H 0.05 3.17 7.99 -2.92 -0.02 3.15 16 15 C 0.02 0.90 5.47 84.65 0.46 1.36 16 16 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 17 Si 0.94 45.77 27.47 68.60 1.88 47.65 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 21 H 0.10 0.52 7.90 -2.39 -0.02 0.50 16 22 H 0.08 0.69 8.13 -2.38 -0.02 0.67 16 23 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.14 1.00 8.05 -2.39 -0.02 0.99 16 25 H 0.10 1.46 8.03 -2.39 -0.02 1.44 16 26 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 27 H 0.07 1.87 7.89 -2.39 -0.02 1.85 16 28 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.02 0.83 7.16 -2.39 -0.02 0.81 16 31 H 0.02 0.75 7.53 -2.39 -0.02 0.73 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -68.30 297.51 5.18 -63.12 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.04 Total: 1.09 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 2.80 Total: -16.76 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.30 Total: -58.00 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.18 Total: -33.75 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Atomic # 35 Polarization: -2.69 SS G_CDS: -0.67 Total: -3.35 kcal Total: -68.30 5.18 -63.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861328741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.690 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds