Wall clock time and date at job start Tue Mar 31 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96595 * 115.56545 * 2 1 4 4 C 1.53008 * 117.49726 * 214.30614 * 2 1 3 5 5 C 1.52997 * 60.00051 * 252.51149 * 4 2 1 6 6 H 1.09001 * 117.49563 * 107.51067 * 5 4 2 7 7 C 1.52998 * 117.50240 * 252.50734 * 5 4 2 8 8 O 1.45197 * 109.47459 * 243.61435 * 7 5 4 9 9 C 1.34224 * 116.99833 * 180.02562 * 8 7 5 10 10 O 1.20822 * 120.00408 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99727 * 179.97438 * 9 8 7 12 12 C 1.53006 * 109.47126 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 H 1.08993 * 109.47043 * 274.31197 * 1 2 3 22 22 H 1.08999 * 109.47254 * 34.31454 * 1 2 3 23 23 H 1.09000 * 109.47460 * 154.31125 * 1 2 3 24 24 H 1.09003 * 117.49343 * 145.02226 * 4 2 1 25 25 H 1.08994 * 117.51587 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.46701 * 123.60703 * 7 5 4 27 27 H 1.09001 * 109.46610 * 3.61602 * 7 5 4 28 28 H 1.09001 * 109.46980 * 59.99687 * 11 9 8 29 29 H 1.09001 * 109.47354 * 299.99208 * 11 9 8 30 30 H 1.08998 * 109.46509 * 60.00247 * 12 11 9 31 31 H 1.08993 * 109.46955 * 299.99807 * 12 11 9 32 32 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3784 1.7735 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6114 -1.8587 1.2683 7 6 3.5489 -0.7760 1.4715 8 8 4.0042 -1.9243 2.2347 9 6 5.1506 -1.7855 2.9189 10 8 5.7540 -0.7394 2.8810 11 6 5.6852 -2.9345 3.7344 12 6 6.9937 -2.5164 4.4083 13 6 7.5279 -3.6652 5.2243 14 1 6.9883 -4.6002 5.2585 15 6 8.7060 -3.5230 5.9264 16 7 9.3632 -2.3847 5.8843 17 14 9.3685 -4.9473 6.9373 18 1 10.6385 -4.5415 7.5914 19 1 9.6185 -6.1108 6.0490 20 1 8.3751 -5.3218 7.9756 21 1 -0.3633 0.0773 1.0247 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3634 -0.9261 -0.4455 24 1 3.1715 -0.8753 -1.2682 25 1 1.6115 -1.8590 -1.2679 26 1 3.3890 0.0670 2.1438 27 1 4.3022 -0.5111 0.7295 28 1 5.8693 -3.7882 3.0822 29 1 4.9557 -3.2098 4.4962 30 1 6.8097 -1.6626 5.0604 31 1 7.7230 -2.2414 3.6464 32 1 9.0194 -1.6452 5.3591 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861328746.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:22 Heat of formation + Delta-G solvation = -83.234318 kcal Electronic energy + Delta-G solvation = -15125.255964 eV Core-core repulsion = 12325.389879 eV Total energy + Delta-G solvation = -2799.866085 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11932 -38.46604 -36.05016 -33.91018 -31.16306 -30.52040 -29.63264 -27.28285 -25.23723 -22.41930 -21.54346 -20.37011 -19.77885 -17.46184 -16.66575 -16.34110 -16.11423 -14.94179 -14.82303 -13.98520 -13.78756 -13.71588 -13.13286 -12.74956 -12.55354 -12.16849 -11.92483 -11.64661 -11.58880 -11.33379 -10.95334 -10.85278 -10.38023 -10.20736 -10.19638 -10.05929 -10.01453 -9.96475 -9.72948 -8.62253 -8.33856 -6.37098 -4.08191 1.22435 2.70479 2.72944 3.18753 3.44251 3.46378 3.65264 4.08582 4.22252 4.25173 4.55241 4.85114 5.02967 5.18107 5.22143 5.29627 5.32253 5.40342 5.40892 5.47343 5.61005 5.79423 5.99835 6.06114 6.51579 6.81646 7.39591 7.44208 8.08529 8.27236 8.43863 8.85359 9.65476 11.03867 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.046285 B = 0.003015 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.804981 B = 9284.741640 C = 9731.110343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 Br -0.109 7.109 4 C -0.146 4.146 5 C -0.125 4.125 6 H 0.132 0.868 7 C 0.091 3.909 8 O -0.363 6.363 9 C 0.457 3.543 10 O -0.506 6.506 11 C -0.096 4.096 12 C 0.020 3.980 13 C -0.610 4.610 14 H 0.052 0.948 15 C 0.016 3.984 16 N -0.909 5.909 17 Si 1.072 2.928 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.287 1.287 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.335 4.946 -15.084 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.172 4.172 3 Br -0.028 7.028 4 C -0.184 4.184 5 C -0.144 4.144 6 H 0.149 0.851 7 C 0.016 3.984 8 O -0.281 6.281 9 C 0.300 3.700 10 O -0.393 6.393 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.648 4.648 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.544 5.544 17 Si 0.900 3.100 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.214 1.214 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.127 0.873 25 H 0.131 0.869 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.628 5.464 -14.125 24.007 hybrid contribution -1.477 0.358 -1.133 1.896 sum -20.105 5.822 -15.258 25.902 Atomic orbital electron populations 1.21500 0.88582 1.03372 1.03451 1.25079 0.96679 0.85644 1.09767 1.97415 1.81929 1.24362 1.99046 1.23648 1.02662 0.97928 0.94198 1.22517 0.97999 0.99372 0.94526 0.85064 1.22494 0.93463 0.87578 0.94837 1.86512 1.41033 1.41595 1.58937 1.24764 0.77328 0.90804 0.77084 1.90637 1.57887 1.29995 1.60732 1.21611 1.00608 0.93469 0.97629 1.19140 0.89685 0.97498 0.95414 1.21974 1.10724 0.99390 1.32744 0.92939 1.25883 0.93991 1.01681 0.97272 1.70747 1.40568 1.03484 1.39631 0.83511 0.76308 0.74248 0.75974 1.20742 1.21376 1.21379 0.90932 0.90849 0.90751 0.87283 0.86876 0.90309 0.90761 0.88750 0.88748 0.96470 0.96475 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 9.92 37.16 0.37 -0.34 16 2 C -0.09 -0.82 3.10 -90.61 -0.28 -1.10 16 3 Br -0.11 -1.17 32.65 -68.01 -2.22 -3.39 16 4 C -0.15 -1.18 9.64 -26.73 -0.26 -1.44 16 5 C -0.12 -1.25 5.79 -90.62 -0.52 -1.77 16 6 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 7 C 0.09 1.25 4.70 37.16 0.17 1.43 16 8 O -0.36 -5.99 10.22 -39.24 -0.40 -6.39 16 9 C 0.46 9.10 7.96 36.01 0.29 9.38 16 10 O -0.51 -11.63 15.73 -18.75 -0.29 -11.93 16 11 C -0.10 -1.98 5.75 -27.88 -0.16 -2.14 16 12 C 0.02 0.52 3.57 -27.88 -0.10 0.42 16 13 C -0.61 -17.37 9.11 -34.44 -0.31 -17.68 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 15 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 16 N -0.91 -28.47 13.65 55.43 0.76 -27.72 16 17 Si 1.07 25.19 29.90 -169.99 -5.08 20.11 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 23 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16 24 H 0.11 0.93 8.03 -51.93 -0.42 0.51 16 25 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 26 H 0.08 1.15 7.89 -51.93 -0.41 0.74 16 27 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 28 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.02 0.48 7.97 -51.93 -0.41 0.07 16 31 H 0.02 0.48 7.97 -51.93 -0.41 0.07 16 32 H 0.27 8.62 7.22 -40.82 -0.29 8.32 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -32.61 299.80 -8.13 -40.74 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.50 Total: -3.08 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -0.90 Total: -12.87 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.76 Total: -27.72 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.70 Total: -18.31 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -2.22 Total: -3.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.61 -8.13 -40.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861328746.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.495 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds