Wall clock time and date at job start Tue Mar 31 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 Br 1.96595 * 115.56545 * 2 1 4 4 C 1.53008 * 117.49726 * 214.30614 * 2 1 3 5 5 C 1.52997 * 60.00051 * 252.51149 * 4 2 1 6 6 H 1.09001 * 117.49563 * 107.51067 * 5 4 2 7 7 C 1.52998 * 117.50240 * 252.50734 * 5 4 2 8 8 O 1.45197 * 109.47459 * 243.61435 * 7 5 4 9 9 C 1.34224 * 116.99833 * 180.02562 * 8 7 5 10 10 O 1.20822 * 120.00408 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99727 * 179.97438 * 9 8 7 12 12 C 1.53006 * 109.47126 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47184 * 179.97438 * 12 11 9 14 14 H 1.08005 * 119.99819 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00046 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 H 1.08993 * 109.47043 * 274.31197 * 1 2 3 22 22 H 1.08999 * 109.47254 * 34.31454 * 1 2 3 23 23 H 1.09000 * 109.47460 * 154.31125 * 1 2 3 24 24 H 1.09003 * 117.49343 * 145.02226 * 4 2 1 25 25 H 1.08994 * 117.51587 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.46701 * 123.60703 * 7 5 4 27 27 H 1.09001 * 109.46610 * 3.61602 * 7 5 4 28 28 H 1.09001 * 109.46980 * 59.99687 * 11 9 8 29 29 H 1.09001 * 109.47354 * 299.99208 * 11 9 8 30 30 H 1.08998 * 109.46509 * 60.00247 * 12 11 9 31 31 H 1.08993 * 109.46955 * 299.99807 * 12 11 9 32 32 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 35 2.3784 1.7735 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6114 -1.8587 1.2683 7 6 3.5489 -0.7760 1.4715 8 8 4.0042 -1.9243 2.2347 9 6 5.1506 -1.7855 2.9189 10 8 5.7540 -0.7394 2.8810 11 6 5.6852 -2.9345 3.7344 12 6 6.9937 -2.5164 4.4083 13 6 7.5279 -3.6652 5.2243 14 1 6.9883 -4.6002 5.2585 15 6 8.7060 -3.5230 5.9264 16 7 9.3632 -2.3847 5.8843 17 14 9.3685 -4.9473 6.9373 18 1 10.6385 -4.5415 7.5914 19 1 9.6185 -6.1108 6.0490 20 1 8.3751 -5.3218 7.9756 21 1 -0.3633 0.0773 1.0247 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3634 -0.9261 -0.4455 24 1 3.1715 -0.8753 -1.2682 25 1 1.6115 -1.8590 -1.2679 26 1 3.3890 0.0670 2.1438 27 1 4.3022 -0.5111 0.7295 28 1 5.8693 -3.7882 3.0822 29 1 4.9557 -3.2098 4.4962 30 1 6.8097 -1.6626 5.0604 31 1 7.7230 -2.2414 3.6464 32 1 9.0194 -1.6452 5.3591 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861328746.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:22 Heat of formation + Delta-G solvation = -101.617885 kcal Electronic energy + Delta-G solvation = -15126.053135 eV Core-core repulsion = 12325.389879 eV Total energy + Delta-G solvation = -2800.663256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63139 -39.34355 -37.51112 -36.02449 -33.10013 -31.34249 -30.41619 -28.40216 -27.06463 -24.35636 -22.40548 -21.79507 -20.74317 -19.25970 -18.38502 -17.83938 -17.56327 -16.11719 -15.70693 -15.60887 -15.33619 -14.80814 -14.43783 -14.20487 -13.90016 -13.62755 -13.30560 -12.73841 -12.67434 -12.56391 -12.16448 -12.14375 -12.08770 -12.02436 -11.87670 -11.58989 -11.29651 -10.86054 -10.79223 -10.56562 -10.56093 -8.70913 -6.43509 0.51612 1.10783 1.45829 1.57002 1.65836 1.84364 2.35134 2.60242 3.15780 3.28523 3.41908 3.53059 3.89875 3.98227 4.12878 4.24098 4.28781 4.32472 4.58379 4.71047 4.75442 4.75999 4.78825 4.97807 5.15991 5.19952 5.27981 5.30641 5.88996 6.15691 6.48007 6.69687 7.41938 8.69419 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.046285 B = 0.003015 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.804981 B = 9284.741640 C = 9731.110343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 Br -0.138 7.138 4 C -0.133 4.133 5 C -0.136 4.136 6 H 0.148 0.852 7 C 0.088 3.912 8 O -0.349 6.349 9 C 0.465 3.535 10 O -0.545 6.545 11 C -0.087 4.087 12 C 0.021 3.979 13 C -0.620 4.620 14 H 0.071 0.929 15 C -0.043 4.043 16 N -0.939 5.939 17 Si 1.125 2.875 18 H -0.289 1.289 19 H -0.263 1.263 20 H -0.264 1.264 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.144 0.856 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.118 0.882 30 H -0.014 1.014 31 H -0.014 1.014 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.344 2.651 -15.661 27.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.165 4.165 3 Br -0.056 7.056 4 C -0.171 4.171 5 C -0.155 4.155 6 H 0.166 0.834 7 C 0.014 3.986 8 O -0.266 6.266 9 C 0.310 3.690 10 O -0.435 6.435 11 C -0.124 4.124 12 C -0.016 4.016 13 C -0.658 4.658 14 H 0.089 0.911 15 C -0.240 4.240 16 N -0.576 5.576 17 Si 0.945 3.055 18 H -0.214 1.214 19 H -0.188 1.188 20 H -0.188 1.188 21 H 0.092 0.908 22 H 0.095 0.905 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.162 0.838 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.691 3.159 -14.733 25.596 hybrid contribution -0.925 1.107 -1.024 1.769 sum -21.616 4.266 -15.757 27.088 Atomic orbital electron populations 1.21567 0.86438 1.04755 1.03930 1.25304 0.97914 0.84070 1.09199 1.97423 1.82613 1.26557 1.99049 1.23810 1.02789 0.97812 0.92656 1.22484 0.96332 1.00928 0.95769 0.83433 1.22708 0.95273 0.86437 0.94222 1.86474 1.39090 1.42583 1.58405 1.24502 0.77833 0.89801 0.76849 1.90634 1.59281 1.31405 1.62200 1.21384 0.98247 0.94220 0.98560 1.18981 0.92092 0.96141 0.94361 1.22445 1.10795 1.00329 1.32184 0.91117 1.27658 0.94762 1.03286 0.98302 1.70904 1.41576 1.04217 1.40906 0.82861 0.75864 0.71535 0.75282 1.21435 1.18803 1.18836 0.90783 0.90509 0.88443 0.87945 0.83776 0.91543 0.91613 0.86402 0.86431 0.99574 0.99534 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.92 71.98 0.71 -0.36 16 2 C -0.09 -1.35 3.10 -10.79 -0.03 -1.38 16 3 Br -0.14 -2.90 32.65 -20.37 -0.67 -3.56 16 4 C -0.13 -1.78 9.64 30.60 0.29 -1.49 16 5 C -0.14 -2.42 5.79 -10.79 -0.06 -2.48 16 6 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 7 C 0.09 2.37 4.70 71.98 0.34 2.71 16 8 O -0.35 -11.09 10.22 -51.36 -0.52 -11.62 16 9 C 0.46 18.48 7.96 71.24 0.57 19.05 16 10 O -0.55 -25.89 15.73 21.98 0.35 -25.55 16 11 C -0.09 -3.52 5.75 29.85 0.17 -3.34 16 12 C 0.02 1.16 3.57 29.85 0.11 1.27 16 13 C -0.62 -35.08 9.11 25.60 0.23 -34.85 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 15 C -0.04 -2.53 5.46 84.65 0.46 -2.06 16 16 N -0.94 -60.39 13.65 21.45 0.29 -60.10 16 17 Si 1.12 49.59 29.90 68.60 2.05 51.65 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 21 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.08 0.74 8.13 -2.39 -0.02 0.72 16 23 H 0.10 0.55 7.90 -2.39 -0.02 0.53 16 24 H 0.10 1.56 8.03 -2.39 -0.02 1.54 16 25 H 0.14 1.08 8.05 -2.39 -0.02 1.06 16 26 H 0.07 1.97 7.89 -2.39 -0.02 1.95 16 27 H 0.07 1.89 7.87 -2.39 -0.02 1.87 16 28 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 29 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 30 H -0.01 -0.84 7.97 -2.39 -0.02 -0.86 16 31 H -0.01 -0.82 7.97 -2.39 -0.02 -0.84 16 32 H 0.25 16.81 7.22 -92.71 -0.67 16.14 16 Total: -1.00 -72.46 299.80 5.49 -66.97 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.20 Total: 5.16 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 2.79 Total: -22.94 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.29 Total: -60.10 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.18 Total: -37.17 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.65 kcal Atomic # 35 Polarization: -2.90 SS G_CDS: -0.67 Total: -3.56 kcal Total: -72.46 5.49 -66.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861328746.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.648 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds