Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 108.57873 * 2 1 4 4 O 1.42100 * 108.58002 * 228.96845 * 2 1 3 5 5 C 1.81402 * 101.91901 * 114.48409 * 2 1 3 6 6 C 1.50695 * 109.47099 * 180.02562 * 5 2 1 7 7 C 1.38115 * 120.03043 * 270.02181 * 6 5 2 8 8 C 1.38387 * 120.06034 * 180.02562 * 7 6 5 9 9 Cl 1.73599 * 119.94611 * 179.97438 * 8 7 6 10 10 C 1.38433 * 120.10708 * 359.97438 * 8 7 6 11 11 C 1.38067 * 120.05868 * 359.68278 * 10 8 7 12 12 C 1.38856 * 120.03021 * 90.00352 * 6 5 2 13 13 O 1.35766 * 120.05674 * 0.02562 * 12 6 5 14 14 C 1.34823 * 117.00451 * 185.87675 * 13 12 6 15 15 H 1.07999 * 119.99688 * 354.93686 * 14 13 12 16 16 C 1.38645 * 120.00092 * 174.93425 * 14 13 12 17 17 N 1.31559 * 119.99956 * 359.72259 * 16 14 13 18 18 Si 1.86808 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46675 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46758 * 120.00184 * 18 16 14 21 21 H 1.48492 * 109.47279 * 240.00220 * 18 16 14 22 22 H 1.09002 * 109.47363 * 305.51849 * 1 2 3 23 23 H 1.09004 * 109.46871 * 65.51905 * 1 2 3 24 24 H 1.09005 * 109.47201 * 185.51163 * 1 2 3 25 25 H 1.08999 * 109.47137 * 60.00252 * 5 2 1 26 26 H 1.08997 * 109.47173 * 300.00251 * 5 2 1 27 27 H 1.08007 * 119.96856 * 359.97438 * 7 6 5 28 28 H 1.08006 * 119.96967 * 179.97438 * 10 8 7 29 29 H 1.08000 * 120.03190 * 180.32065 * 11 10 8 30 30 H 0.97001 * 120.00006 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.6825 -0.8171 1.7958 7 6 4.3683 -1.9425 1.3825 8 6 5.7401 -2.0182 1.5485 9 17 6.5990 -3.4344 1.0285 10 6 6.4285 -0.9665 2.1284 11 6 5.7486 0.1637 2.5368 12 6 4.3709 0.2393 2.3774 13 8 3.6991 1.3466 2.7847 14 6 4.4388 2.3828 3.2282 15 1 5.5095 2.2796 3.3251 16 6 3.8251 3.5810 3.5599 17 7 2.5215 3.7085 3.4367 18 14 4.8500 5.0165 4.1752 19 1 6.2807 4.6211 4.2170 20 1 4.6830 6.1727 3.2584 21 1 4.4010 5.3969 5.5385 22 1 -0.3634 0.5970 0.8364 23 1 -0.3633 0.4259 -0.9353 24 1 -0.3634 -1.0229 0.0987 25 1 1.7610 -1.7369 1.6666 26 1 1.7609 -0.1170 2.4042 27 1 3.8333 -2.7645 0.9302 28 1 7.4991 -1.0281 2.2572 29 1 6.2868 0.9860 2.9845 30 1 2.0920 4.5466 3.6691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863345130.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -77.762473 kcal Electronic energy + Delta-G solvation = -18990.273345 eV Core-core repulsion = 15711.992000 eV Total energy + Delta-G solvation = -3278.281346 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43642 -36.94028 -36.39005 -35.65496 -35.40579 -32.65138 -32.26927 -29.41695 -29.04318 -26.76601 -25.52442 -21.94332 -21.15911 -18.39452 -18.21328 -17.22485 -16.21654 -15.90095 -15.65747 -15.11272 -14.94075 -14.55514 -13.91804 -13.83222 -13.13425 -13.10879 -12.92986 -12.72190 -12.45059 -12.34348 -11.89024 -11.49649 -11.39281 -11.35487 -11.21562 -11.08373 -10.88311 -10.52752 -10.51853 -10.47878 -10.12934 -9.57516 -8.94227 -8.34106 -7.34581 -6.61819 -4.16844 0.36851 1.88876 1.98337 2.76165 3.05337 3.08187 3.13267 3.22104 3.83905 4.07402 4.26388 4.43703 4.85637 4.95819 5.01781 5.03098 5.10663 5.42435 5.53926 5.61683 5.82073 5.92317 6.01213 6.31147 6.50262 6.71402 6.77751 7.00159 7.14251 7.41667 7.80515 8.82712 9.43475 10.54585 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.007430 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.255447 B = 3767.405470 C = 5637.259843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.665 4.665 2 S 2.399 3.601 3 O -0.911 6.911 4 O -0.951 6.951 5 C -0.529 4.529 6 C -0.166 4.166 7 C -0.041 4.041 8 C -0.129 4.129 9 Cl -0.101 7.101 10 C -0.049 4.049 11 C -0.222 4.222 12 C 0.165 3.835 13 O -0.149 6.149 14 C -0.391 4.391 15 H 0.097 0.903 16 C 0.045 3.955 17 N -0.844 5.844 18 Si 0.944 3.056 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.275 1.275 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.127 0.873 26 H 0.145 0.855 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -7.629 -1.842 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.582 3.418 3 O -0.908 6.908 4 O -0.948 6.948 5 C -0.657 4.657 6 C -0.170 4.170 7 C -0.061 4.061 8 C -0.156 4.156 9 Cl -0.073 7.073 10 C -0.069 4.069 11 C -0.241 4.241 12 C 0.107 3.893 13 O -0.049 6.049 14 C -0.466 4.466 15 H 0.115 0.885 16 C -0.162 4.162 17 N -0.476 5.476 18 Si 0.768 3.232 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.200 1.200 22 H 0.148 0.852 23 H 0.140 0.860 24 H 0.139 0.861 25 H 0.145 0.855 26 H 0.163 0.837 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.185 -7.165 -2.520 7.687 hybrid contribution -0.055 0.282 0.879 0.925 sum -1.240 -6.883 -1.641 7.184 Atomic orbital electron populations 1.30369 1.28908 1.10639 1.11367 1.08930 0.77862 0.76625 0.78393 1.93684 1.77738 1.33430 1.85921 1.93534 1.78997 1.67559 1.54718 1.28842 1.01218 1.12848 1.22833 1.17718 0.91404 0.96035 1.11858 1.20479 0.92223 0.96478 0.96883 1.20198 0.92110 0.90842 1.12455 1.98283 1.77641 1.41021 1.90312 1.20724 0.99271 0.91490 0.95367 1.21106 0.94058 0.99852 1.09103 1.19112 0.90695 0.88304 0.91157 1.83921 1.34674 1.19342 1.67005 1.21470 0.92174 0.89287 1.43719 0.88518 1.25342 0.96341 0.97879 0.96612 1.70021 1.08677 1.26619 1.42326 0.85606 0.79289 0.79868 0.78454 1.18887 1.19852 1.20014 0.85247 0.85977 0.86092 0.85458 0.83658 0.85276 0.85970 0.84139 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -7.75 10.62 101.05 1.07 -6.67 16 2 S 2.40 40.56 5.34 -107.50 -0.57 39.98 16 3 O -0.91 -20.55 18.10 -57.83 -1.05 -21.60 16 4 O -0.95 -17.89 18.10 -57.83 -1.05 -18.94 16 5 C -0.53 -8.58 5.71 36.00 0.21 -8.38 16 6 C -0.17 -3.29 5.16 -104.44 -0.54 -3.83 16 7 C -0.04 -0.74 9.48 -39.57 -0.38 -1.11 16 8 C -0.13 -2.31 6.32 -39.45 -0.25 -2.56 16 9 Cl -0.10 -1.57 28.95 -51.86 -1.50 -3.07 16 10 C -0.05 -0.89 9.82 -39.57 -0.39 -1.28 16 11 C -0.22 -4.58 9.17 -39.40 -0.36 -4.94 16 12 C 0.17 3.76 6.62 -39.11 -0.26 3.50 16 13 O -0.15 -3.89 8.81 0.02 0.00 -3.89 16 14 C -0.39 -10.27 9.49 30.88 0.29 -9.97 16 15 H 0.10 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16 17 N -0.84 -23.21 13.67 55.48 0.76 -22.46 16 18 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H 0.13 1.42 8.14 -51.92 -0.42 0.99 16 23 H 0.12 1.29 8.14 -51.92 -0.42 0.87 16 24 H 0.12 1.04 8.14 -51.92 -0.42 0.61 16 25 H 0.13 1.47 8.09 -51.92 -0.42 1.05 16 26 H 0.15 2.40 7.53 -51.93 -0.39 2.01 16 27 H 0.13 2.02 8.06 -52.48 -0.42 1.59 16 28 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 29 H 0.14 2.81 5.64 -52.49 -0.30 2.52 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -33.37 297.03 -7.28 -40.66 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -2.63 Total: 4.46 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: -0.70 Total: -34.17 kcal Atomic # 7 Polarization: -23.21 SS G_CDS: 0.76 Total: -22.46 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -2.09 Total: -44.43 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 40.56 SS G_CDS: -0.57 Total: 39.98 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -1.50 Total: -3.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.37 -7.28 -40.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863345130.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.107 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds