Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42099 * 108.57873 * 2 1 4 4 O 1.42100 * 108.58002 * 228.96845 * 2 1 3 5 5 C 1.81402 * 101.91901 * 114.48409 * 2 1 3 6 6 C 1.50695 * 109.47099 * 180.02562 * 5 2 1 7 7 C 1.38115 * 120.03043 * 270.02181 * 6 5 2 8 8 C 1.38387 * 120.06034 * 180.02562 * 7 6 5 9 9 Cl 1.73599 * 119.94611 * 179.97438 * 8 7 6 10 10 C 1.38433 * 120.10708 * 359.97438 * 8 7 6 11 11 C 1.38067 * 120.05868 * 359.68278 * 10 8 7 12 12 C 1.38856 * 120.03021 * 90.00352 * 6 5 2 13 13 O 1.35766 * 120.05674 * 0.02562 * 12 6 5 14 14 C 1.34823 * 117.00451 * 185.87675 * 13 12 6 15 15 H 1.07999 * 119.99688 * 354.93686 * 14 13 12 16 16 C 1.38645 * 120.00092 * 174.93425 * 14 13 12 17 17 N 1.31559 * 119.99956 * 359.72259 * 16 14 13 18 18 Si 1.86808 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46675 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46758 * 120.00184 * 18 16 14 21 21 H 1.48492 * 109.47279 * 240.00220 * 18 16 14 22 22 H 1.09002 * 109.47363 * 305.51849 * 1 2 3 23 23 H 1.09004 * 109.46871 * 65.51905 * 1 2 3 24 24 H 1.09005 * 109.47201 * 185.51163 * 1 2 3 25 25 H 1.08999 * 109.47137 * 60.00252 * 5 2 1 26 26 H 1.08997 * 109.47173 * 300.00251 * 5 2 1 27 27 H 1.08007 * 119.96856 * 359.97438 * 7 6 5 28 28 H 1.08006 * 119.96967 * 179.97438 * 10 8 7 29 29 H 1.08000 * 120.03190 * 180.32065 * 11 10 8 30 30 H 0.97001 * 120.00006 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.6825 -0.8171 1.7958 7 6 4.3683 -1.9425 1.3825 8 6 5.7401 -2.0182 1.5485 9 17 6.5990 -3.4344 1.0285 10 6 6.4285 -0.9665 2.1284 11 6 5.7486 0.1637 2.5368 12 6 4.3709 0.2393 2.3774 13 8 3.6991 1.3466 2.7847 14 6 4.4388 2.3828 3.2282 15 1 5.5095 2.2796 3.3251 16 6 3.8251 3.5810 3.5599 17 7 2.5215 3.7085 3.4367 18 14 4.8500 5.0165 4.1752 19 1 6.2807 4.6211 4.2170 20 1 4.6830 6.1727 3.2584 21 1 4.4010 5.3969 5.5385 22 1 -0.3634 0.5970 0.8364 23 1 -0.3633 0.4259 -0.9353 24 1 -0.3634 -1.0229 0.0987 25 1 1.7610 -1.7369 1.6666 26 1 1.7609 -0.1170 2.4042 27 1 3.8333 -2.7645 0.9302 28 1 7.4991 -1.0281 2.2572 29 1 6.2868 0.9860 2.9845 30 1 2.0920 4.5466 3.6691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863345130.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -102.281996 kcal Electronic energy + Delta-G solvation = -18991.336592 eV Core-core repulsion = 15711.992000 eV Total energy + Delta-G solvation = -3279.344592 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05404 -38.53981 -37.84056 -37.09936 -36.87636 -34.35519 -33.86328 -30.69540 -30.38023 -28.23478 -27.33026 -23.56522 -22.68867 -19.97024 -19.75582 -18.88350 -17.55450 -17.36353 -17.12819 -16.57874 -16.46927 -16.16098 -15.58136 -15.39538 -14.78938 -14.34547 -13.95450 -13.90784 -13.88958 -13.69891 -13.60625 -12.98787 -12.88385 -12.87072 -12.80241 -12.59242 -12.36373 -12.10254 -11.90347 -11.84267 -11.53532 -11.25563 -10.75960 -9.83490 -8.97319 -8.47919 -6.12477 -0.92070 0.36293 0.41138 1.30015 1.37400 1.44786 1.54273 1.96246 2.16258 2.61680 2.83714 3.08149 3.20245 3.34557 3.61355 3.89095 4.09105 4.10844 4.19664 4.32174 4.46013 4.54142 4.79148 4.93632 5.00978 5.06638 5.23786 5.37131 5.47442 5.84731 5.96906 6.96294 7.66724 8.73413 Molecular weight = 290.02amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.007430 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.255447 B = 3767.405470 C = 5637.259843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.393 3.607 3 O -0.983 6.983 4 O -0.977 6.977 5 C -0.534 4.534 6 C -0.171 4.171 7 C -0.048 4.048 8 C -0.121 4.121 9 Cl -0.071 7.071 10 C -0.048 4.048 11 C -0.236 4.236 12 C 0.133 3.867 13 O -0.191 6.191 14 C -0.418 4.418 15 H 0.105 0.895 16 C -0.012 4.012 17 N -0.899 5.899 18 Si 1.012 2.988 19 H -0.252 1.252 20 H -0.274 1.274 21 H -0.265 1.265 22 H 0.141 0.859 23 H 0.140 0.860 24 H 0.166 0.834 25 H 0.181 0.819 26 H 0.138 0.862 27 H 0.161 0.839 28 H 0.153 0.847 29 H 0.138 0.862 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -9.958 -2.275 10.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.582 3.418 3 O -0.980 6.980 4 O -0.974 6.974 5 C -0.662 4.662 6 C -0.174 4.174 7 C -0.068 4.068 8 C -0.148 4.148 9 Cl -0.042 7.042 10 C -0.067 4.067 11 C -0.256 4.256 12 C 0.078 3.922 13 O -0.095 6.095 14 C -0.494 4.494 15 H 0.122 0.878 16 C -0.212 4.212 17 N -0.535 5.535 18 Si 0.831 3.169 19 H -0.175 1.175 20 H -0.199 1.199 21 H -0.189 1.189 22 H 0.159 0.841 23 H 0.158 0.842 24 H 0.184 0.816 25 H 0.198 0.802 26 H 0.156 0.844 27 H 0.178 0.822 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.207 -9.548 -2.960 10.069 hybrid contribution -0.015 0.570 0.844 1.018 sum -1.221 -8.978 -2.116 9.305 Atomic orbital electron populations 1.30068 1.21374 1.14194 1.13024 1.08455 0.80665 0.74783 0.77872 1.93617 1.80942 1.36750 1.86730 1.93495 1.81239 1.67337 1.55319 1.28926 0.99351 1.15804 1.22136 1.18231 0.93545 0.95403 1.10212 1.20891 0.92634 0.96730 0.96534 1.20499 0.92526 0.91485 1.10264 1.98301 1.76963 1.39090 1.89861 1.21011 1.00742 0.90522 0.94437 1.21274 0.93737 1.00945 1.09619 1.19754 0.92012 0.88449 0.91943 1.83913 1.35314 1.20326 1.69919 1.21890 0.92833 0.90191 1.44460 0.87807 1.26470 0.97571 1.00378 0.96815 1.70140 1.10471 1.27455 1.45459 0.84625 0.78206 0.75990 0.78037 1.17490 1.19886 1.18936 0.84077 0.84169 0.81591 0.80181 0.84410 0.82191 0.82966 0.84472 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -12.44 10.62 113.37 1.20 -11.23 16 2 S 2.39 79.21 5.34 -56.49 -0.30 78.91 16 3 O -0.98 -46.44 18.10 -127.37 -2.30 -48.75 16 4 O -0.98 -35.53 18.10 -127.37 -2.30 -37.83 16 5 C -0.53 -16.67 5.71 71.23 0.41 -16.27 16 6 C -0.17 -6.69 5.16 -19.75 -0.10 -6.80 16 7 C -0.05 -1.64 9.48 22.28 0.21 -1.43 16 8 C -0.12 -4.04 6.32 22.35 0.14 -3.90 16 9 Cl -0.07 -1.97 28.95 -2.72 -0.08 -2.04 16 10 C -0.05 -1.67 9.82 22.28 0.22 -1.45 16 11 C -0.24 -9.94 9.17 22.39 0.21 -9.73 16 12 C 0.13 6.23 6.62 22.58 0.15 6.38 16 13 O -0.19 -10.57 8.81 -22.84 -0.20 -10.77 16 14 C -0.42 -23.21 9.49 67.92 0.64 -22.57 16 15 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 16 C -0.01 -0.66 5.49 84.83 0.47 -0.19 16 17 N -0.90 -52.35 13.67 21.61 0.30 -52.06 16 18 Si 1.01 41.60 29.55 68.60 2.03 43.63 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 23 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.18 3.47 8.09 -2.39 -0.02 3.45 16 26 H 0.14 4.61 7.53 -2.39 -0.02 4.59 16 27 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.14 5.72 5.64 -2.91 -0.02 5.70 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -78.42 297.03 1.85 -76.57 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.18 Total: 19.53 kcal Atomic # 6 Polarization: -70.74 SS G_CDS: 3.55 Total: -67.19 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.30 Total: -52.06 kcal Atomic # 8 Polarization: -92.54 SS G_CDS: -4.81 Total: -97.35 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 79.21 SS G_CDS: -0.30 Total: 78.91 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.08 Total: -2.04 kcal Total: -78.42 1.85 -76.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863345130.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.710 kcal (2) G-P(sol) polarization free energy of solvation -78.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds