Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99566 * 2 1 4 4 H 1.48498 * 109.46668 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47250 * 299.99967 * 3 2 1 6 6 H 1.48502 * 109.47035 * 60.00502 * 3 2 1 7 7 C 1.37874 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46690 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47074 * 179.97438 * 10 9 7 12 12 N 1.40435 * 126.82120 * 270.26827 * 11 10 9 13 13 C 1.30695 * 106.81843 * 180.14411 * 12 11 10 14 14 N 1.48026 * 125.51610 * 179.89564 * 13 12 11 15 15 O 1.21793 * 119.99866 * 179.71377 * 14 13 12 16 16 O 1.21799 * 119.99978 * 359.71125 * 14 13 12 17 17 N 1.33264 * 108.97126 * 359.62242 * 13 12 11 18 18 C 1.30935 * 109.80660 * 0.25104 * 17 13 12 19 19 Br 1.89099 * 125.97876 * 179.97438 * 18 17 13 20 20 H 0.97003 * 120.00087 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47056 * 60.00294 * 9 7 2 22 22 H 1.08995 * 109.46676 * 299.99483 * 9 7 2 23 23 H 1.08996 * 109.47197 * 59.99696 * 10 9 7 24 24 H 1.09002 * 109.47076 * 299.99953 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 0.0001 12 7 1.0880 -5.6568 1.1246 13 6 0.4784 -6.7231 0.6781 14 7 -0.1318 -7.7794 1.5166 15 8 -0.6815 -8.7314 0.9924 16 8 -0.0841 -7.6964 2.7309 17 7 0.4898 -6.7027 -0.6543 18 6 1.1096 -5.6293 -1.0763 19 35 1.3891 -5.1457 -2.8829 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6249 -2.5570 0.8897 23 1 2.8721 -3.6042 0.8894 24 1 2.8721 -3.6042 -0.8905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865388675.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = 97.533236 kcal Electronic energy + Delta-G solvation = -15007.797479 eV Core-core repulsion = 12008.689376 eV Total energy + Delta-G solvation = -2999.108102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 289.980 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.00615 -41.95362 -36.77716 -35.52125 -33.17618 -33.02322 -30.95498 -30.30142 -27.57685 -25.30253 -22.79725 -22.21403 -21.30311 -19.28890 -18.77339 -18.01727 -17.23981 -16.10238 -15.98414 -15.10402 -14.70373 -14.07737 -12.84543 -12.73839 -12.12915 -11.91013 -11.80022 -11.67454 -11.30593 -11.23397 -11.22745 -10.98325 -10.82654 -10.57237 -10.54073 -10.10259 -9.71059 -9.58796 -8.70380 -6.33856 -4.41923 -0.10216 0.28572 0.42935 1.01545 2.17702 2.25968 3.13154 3.21856 3.23950 3.77724 4.19234 4.64428 5.02594 5.07578 5.43474 5.59138 5.90702 5.96061 6.09728 6.84385 7.12300 7.16534 7.57750 7.61002 7.87242 8.62280 9.25294 10.77037 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.005813 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.166547 B = 4815.880104 C = 6029.856745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.013 3.987 10 C 0.107 3.893 11 N -0.294 5.294 12 N -0.199 5.199 13 C 0.260 3.740 14 N 0.068 4.932 15 O -0.099 6.099 16 O -0.112 6.112 17 N -0.469 5.469 18 C 0.276 3.724 19 Br 0.122 6.878 20 H 0.266 0.734 21 H 0.031 0.969 22 H 0.031 0.969 23 H 0.109 0.891 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -9.842 -5.702 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.083 0.917 9 C -0.025 4.025 10 C -0.011 4.011 11 N -0.090 5.090 12 N -0.041 5.041 13 C -0.100 4.100 14 N 0.600 4.400 15 O -0.322 6.322 16 O -0.330 6.330 17 N -0.202 5.202 18 C -0.078 4.078 19 Br 0.201 6.799 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.127 0.873 24 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.308 -9.092 -6.183 11.809 hybrid contribution 0.197 0.788 0.383 0.898 sum 4.505 -8.304 -5.801 11.086 Atomic orbital electron populations 1.69966 1.06231 1.27393 1.48632 1.25001 0.94924 0.99648 0.94355 0.86372 0.79960 0.82833 0.77911 1.19436 1.20698 1.20700 1.20868 0.93185 0.89429 1.53633 0.91695 1.19565 0.93867 0.89806 0.99294 1.23218 0.96128 0.76371 1.05404 1.51540 1.37751 1.19091 1.00571 1.78289 1.14353 1.03402 1.08068 1.23882 1.04775 0.92767 0.88579 1.41618 0.98928 0.99207 1.00255 1.94617 1.40808 1.19906 1.76879 1.94647 1.62390 1.82703 0.93280 1.70008 1.21551 1.20909 1.07762 1.25994 0.98607 0.90336 0.92888 1.97023 1.94795 1.90524 0.97557 0.92415 0.95112 0.95037 0.87324 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 13.29 55.43 0.74 -23.70 14 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 14 3 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 14 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 14 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 14 7 C -0.53 -13.02 9.11 -34.44 -0.31 -13.34 14 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 14 9 C 0.01 0.29 5.30 -27.88 -0.15 0.14 14 10 C 0.11 1.83 6.24 -4.04 -0.03 1.81 14 11 N -0.29 -5.15 3.64 -60.81 -0.22 -5.37 14 12 N -0.20 -3.72 12.65 31.75 0.40 -3.32 14 13 C 0.26 4.75 9.01 -308.62 -2.78 1.97 14 14 N 0.07 1.18 4.45 31.81 0.14 1.32 14 15 O -0.10 -1.66 19.23 -29.46 -0.57 -2.22 14 16 O -0.11 -1.90 19.22 -29.46 -0.57 -2.47 14 17 N -0.47 -8.31 11.16 -11.18 -0.12 -8.43 14 18 C 0.28 4.54 8.46 -90.50 -0.77 3.78 14 19 Br 0.12 1.57 33.46 -68.01 -2.28 -0.70 14 20 H 0.27 6.94 8.31 -40.82 -0.34 6.60 14 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 14 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 14 23 H 0.11 1.76 8.14 -51.93 -0.42 1.33 14 24 H 0.11 1.60 7.71 -51.93 -0.40 1.20 14 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -27.36 259.73 -8.92 -36.28 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: -1.21 Total: -5.82 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -4.13 Total: -4.08 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.93 Total: -39.50 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -1.13 Total: -4.69 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 35 Polarization: 1.57 SS G_CDS: -2.28 Total: -0.70 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.36 -8.92 -36.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865388675.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.814 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds