Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36951 * 119.99861 * 2 1 4 4 H 1.08006 * 119.99511 * 151.22058 * 3 2 1 5 5 C 1.38980 * 120.00419 * 330.95148 * 3 2 1 6 6 N 1.31407 * 120.00121 * 158.75228 * 5 3 2 7 7 Si 1.86793 * 119.99669 * 338.75343 * 5 3 2 8 8 H 1.48508 * 109.47451 * 93.98321 * 7 5 3 9 9 H 1.48499 * 109.47427 * 213.98071 * 7 5 3 10 10 H 1.48499 * 109.47640 * 333.98440 * 7 5 3 11 11 C 1.34768 * 119.99747 * 179.97438 * 2 1 3 12 12 O 1.21673 * 120.00100 * 175.31655 * 11 2 1 13 13 C 1.47159 * 120.00234 * 355.32620 * 11 2 1 14 14 C 1.35271 * 123.15067 * 184.30300 * 13 11 2 15 15 S 1.70926 * 108.84596 * 179.97438 * 14 13 11 16 16 C 1.70762 * 91.15022 * 0.28004 * 15 14 13 17 17 Br 1.89102 * 124.71478 * 179.85172 * 16 15 14 18 18 N 1.28740 * 110.56914 * 359.83488 * 16 15 14 19 19 H 1.09001 * 109.47083 * 355.18188 * 1 2 3 20 20 H 1.09002 * 109.47185 * 115.18094 * 1 2 3 21 21 H 1.08993 * 109.47551 * 235.18238 * 1 2 3 22 22 H 0.97000 * 119.99997 * 180.02562 * 6 5 3 23 23 H 1.08002 * 125.57458 * 0.03012 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.1297 1.2438 0.4503 5 6 1.5860 2.3140 -0.5844 6 7 2.0069 3.5110 -0.2426 7 14 0.2301 2.1283 -1.8556 8 1 -1.0923 2.2229 -1.1865 9 1 0.3503 3.2073 -2.8688 10 1 0.3539 0.8072 -2.5224 11 6 2.1388 -1.1672 0.0005 12 8 3.3525 -1.1690 -0.0855 13 6 1.4067 -2.4394 0.1049 14 6 2.0211 -3.6411 0.1963 15 16 0.8307 -4.8633 0.3001 16 6 -0.4184 -3.7027 0.2073 17 35 -2.2660 -4.1040 0.2408 18 7 0.0726 -2.5164 0.1117 19 1 -0.3633 1.0240 0.0863 20 1 -0.3634 -0.4373 -0.9300 21 1 -0.3634 -0.5867 0.8436 22 1 1.6131 4.2982 -0.6502 23 1 3.0890 -3.8018 0.2036 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874256254.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = 16.159394 kcal Electronic energy + Delta-G solvation = -13489.106327 eV Core-core repulsion = 10896.929710 eV Total energy + Delta-G solvation = -2592.176617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.61560 -39.57292 -36.94099 -34.22659 -33.28525 -30.83822 -28.64551 -27.82582 -25.77486 -23.04644 -20.78601 -19.69913 -19.07370 -17.75088 -17.07423 -16.76700 -16.55085 -15.55370 -15.42502 -14.66457 -14.50425 -14.33899 -14.05529 -13.87583 -12.98534 -12.61556 -12.36555 -12.20746 -11.86843 -11.75665 -11.28557 -10.98154 -10.75608 -10.60398 -9.99845 -9.85838 -8.62677 -6.18160 -0.71544 -0.41274 0.34135 0.40627 0.76908 1.19357 1.31143 1.40470 2.10284 2.25118 2.60023 2.94206 3.25577 4.00994 4.10868 4.31892 4.50454 4.59286 4.87664 5.38846 5.89146 6.08468 6.42075 6.76120 7.13532 7.67683 8.53176 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.006524 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.130170 B = 4290.929547 C = 5221.248755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.452 5.452 3 C -0.340 4.340 4 H 0.059 0.941 5 C 0.016 3.984 6 N -0.895 5.895 7 Si 0.953 3.047 8 H -0.240 1.240 9 H -0.280 1.280 10 H -0.267 1.267 11 C 0.509 3.491 12 O -0.611 6.611 13 C 0.009 3.991 14 C -0.231 4.231 15 S 0.387 5.613 16 C -0.038 4.038 17 Br 0.075 6.925 18 N -0.433 5.433 19 H 0.065 0.935 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.286 0.714 23 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 -20.974 0.347 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.170 5.170 3 C -0.468 4.468 4 H 0.077 0.923 5 C -0.188 4.188 6 N -0.532 5.532 7 Si 0.776 3.224 8 H -0.164 1.164 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.297 3.703 12 O -0.497 6.497 13 C -0.128 4.128 14 C -0.375 4.375 15 S 0.640 5.360 16 C -0.393 4.393 17 Br 0.155 6.845 18 N -0.152 5.152 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.106 0.894 22 H 0.096 0.904 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -13.573 -21.463 0.370 25.398 hybrid contribution 0.849 1.734 -0.508 1.996 sum -12.724 -19.730 -0.138 23.478 Atomic orbital electron populations 1.22235 0.79527 1.01605 1.03227 1.43707 1.06482 1.04664 1.62179 1.18872 1.03844 0.85517 1.38536 0.92285 1.26104 1.00841 0.93709 0.98120 1.69825 1.44112 0.98681 1.40541 0.85853 0.79421 0.78291 0.78876 1.16397 1.20655 1.19204 1.17480 0.86533 0.82863 0.83445 1.90629 1.14707 1.87026 1.57373 1.20220 0.87978 0.95246 1.09318 1.27070 1.08902 0.96414 1.05088 1.82155 0.88738 1.05006 1.60125 1.28832 1.01674 0.95917 1.12835 1.96837 0.98498 1.91568 1.97582 1.67293 1.10679 1.23754 1.13464 0.91687 0.91724 0.89375 0.90450 0.78210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.36 6.75 127.77 0.86 4.22 14 2 N -0.45 -24.22 2.74 -662.92 -1.81 -26.03 14 3 C -0.34 -20.86 9.53 84.07 0.80 -20.06 14 4 H 0.06 4.14 7.78 -2.91 -0.02 4.12 14 5 C 0.02 0.94 5.18 84.93 0.44 1.38 14 6 N -0.90 -53.46 13.96 21.67 0.30 -53.16 14 7 Si 0.95 43.59 24.39 68.60 1.67 45.27 14 8 H -0.24 -9.67 6.69 99.48 0.67 -9.00 14 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 14 10 H -0.27 -12.34 6.71 99.48 0.67 -11.67 14 11 C 0.51 26.22 7.60 86.59 0.66 26.88 14 12 O -0.61 -35.65 16.51 -4.26 -0.07 -35.72 14 13 C 0.01 0.34 6.54 40.53 0.27 0.60 14 14 C -0.23 -6.75 10.62 67.13 0.71 -6.04 14 15 S 0.39 7.29 22.95 -56.49 -1.30 6.00 14 16 C -0.04 -0.96 7.84 130.70 1.02 0.06 14 17 Br 0.07 1.46 34.12 -20.37 -0.70 0.76 14 18 N -0.43 -14.85 6.80 -187.93 -1.28 -16.13 14 19 H 0.06 2.87 4.56 -2.39 -0.01 2.86 14 20 H 0.06 2.68 6.63 -2.39 -0.02 2.67 14 21 H 0.09 3.53 6.63 -2.39 -0.02 3.52 14 22 H 0.29 15.46 8.31 -92.71 -0.77 14.69 14 23 H 0.20 5.44 8.03 -2.91 -0.02 5.42 14 Total: -1.00 -73.83 237.97 2.77 -71.06 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: 1.18 Total: 0.91 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.76 Total: 7.05 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -2.79 Total: -95.32 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.07 Total: -35.72 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.67 Total: 45.27 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -1.30 Total: 6.00 kcal Atomic # 35 Polarization: 1.46 SS G_CDS: -0.70 Total: 0.76 kcal Total: -73.83 2.77 -71.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874256254.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.219 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds