Wall clock time and date at job start Tue Mar 31 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38185 * 120.39817 * 2 1 4 4 N 1.31884 * 120.77609 * 179.97438 * 3 2 1 5 5 C 1.31979 * 121.70794 * 359.70435 * 4 3 2 6 6 Cl 1.73599 * 119.63350 * 180.29116 * 5 4 3 7 7 C 1.38355 * 120.72971 * 0.58242 * 5 4 3 8 8 S 1.76202 * 120.42371 * 179.70502 * 7 5 4 9 9 O 1.42098 * 106.39988 * 181.18195 * 8 7 5 10 10 O 1.42101 * 106.39830 * 48.26468 * 8 7 5 11 11 N 1.65597 * 107.21525 * 294.72653 * 8 7 5 12 12 C 1.46495 * 119.99851 * 269.71894 * 11 8 7 13 13 C 1.36936 * 120.00045 * 90.00197 * 11 8 7 14 14 H 1.07996 * 120.00106 * 353.51398 * 13 11 8 15 15 C 1.38818 * 119.99908 * 173.51769 * 13 11 8 16 16 N 1.31615 * 119.99818 * 334.67122 * 15 13 11 17 17 Si 1.86795 * 120.00106 * 154.66839 * 15 13 11 18 18 H 1.48507 * 109.47154 * 84.97680 * 17 15 13 19 19 H 1.48495 * 109.47404 * 204.98051 * 17 15 13 20 20 H 1.48498 * 109.47227 * 324.98147 * 17 15 13 21 21 C 1.38604 * 119.15138 * 359.42947 * 7 5 4 22 22 H 1.09007 * 109.47203 * 270.02101 * 1 2 3 23 23 H 1.08998 * 109.47218 * 30.02563 * 1 2 3 24 24 H 1.08999 * 109.46924 * 150.02727 * 1 2 3 25 25 H 1.08000 * 119.61255 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47640 * 264.82159 * 12 11 8 27 27 H 1.09003 * 109.46844 * 24.82330 * 12 11 8 28 28 H 1.09005 * 109.47343 * 144.81620 * 12 11 8 29 29 H 0.96998 * 120.00153 * 180.02562 * 16 15 13 30 30 H 1.08001 * 120.78431 * 180.25018 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2063 1.1919 0.0000 4 7 3.5251 1.2006 0.0005 5 6 4.2261 0.0824 0.0068 6 17 5.9605 0.1567 0.0148 7 6 3.5941 -1.1483 0.0011 8 16 4.5381 -2.6362 0.0018 9 8 3.6024 -3.7050 -0.0330 10 8 5.5147 -2.4911 1.0237 11 7 5.3657 -2.6921 -1.4314 12 6 4.7636 -3.3384 -2.6002 13 6 6.6153 -2.1394 -1.5226 14 1 7.0184 -1.5763 -0.6939 15 6 7.3637 -2.3028 -2.6802 16 7 7.1476 -3.3388 -3.4628 17 14 8.6775 -1.0525 -3.1273 18 1 9.9435 -1.3938 -2.4300 19 1 8.9001 -1.0717 -4.5953 20 1 8.2334 0.3022 -2.7117 21 6 2.2089 -1.1960 0.0006 22 1 -0.3634 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6664 2.1273 0.0004 26 1 5.1092 -4.3703 -2.6631 27 1 3.6779 -3.3240 -2.5042 28 1 5.0557 -2.8018 -3.5029 29 1 7.6709 -3.4532 -4.2715 30 1 1.6883 -2.1422 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886401238.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:49 Heat of formation + Delta-G solvation = -42.368196 kcal Electronic energy + Delta-G solvation = -19569.650170 eV Core-core repulsion = 16325.196386 eV Total energy + Delta-G solvation = -3244.453784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39360 -38.28883 -37.75501 -37.41361 -36.73974 -34.66191 -33.31014 -33.17278 -28.27298 -28.21873 -25.57931 -25.12634 -23.68019 -20.41560 -19.27582 -18.90939 -18.57338 -17.97791 -17.73059 -16.33991 -16.26437 -15.80069 -15.19489 -15.03992 -14.67378 -14.53337 -14.04991 -13.90977 -13.83310 -13.43760 -13.16961 -13.11827 -13.04050 -12.81349 -12.67134 -12.50970 -12.35018 -12.23058 -11.98440 -11.47660 -11.31288 -11.04987 -10.72289 -10.02104 -9.92844 -8.21812 -5.71314 -0.67114 -0.38584 -0.11667 0.64309 1.42148 1.45805 1.55172 2.12206 2.34749 2.56228 2.77563 3.12816 3.31947 3.41960 3.69021 3.86052 3.95158 4.03614 4.40008 4.53172 4.65223 4.85227 5.04273 5.07049 5.09377 5.19349 5.44332 5.59764 5.71934 6.41695 6.50051 7.01995 7.37987 8.82899 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.007917 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.575629 B = 3535.842343 C = 4080.530873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.146 4.146 3 C 0.154 3.846 4 N -0.508 5.508 5 C 0.234 3.766 6 Cl -0.010 7.010 7 C -0.724 4.724 8 S 2.665 3.335 9 O -0.986 6.986 10 O -0.979 6.979 11 N -0.852 5.852 12 C 0.135 3.865 13 C -0.329 4.329 14 H 0.112 0.888 15 C 0.010 3.990 16 N -0.889 5.889 17 Si 0.936 3.064 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.263 1.263 21 C 0.010 3.990 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.214 0.786 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.268 0.732 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.458 8.019 3.122 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C -0.003 4.003 4 N -0.220 5.220 5 C 0.069 3.931 6 Cl 0.019 6.981 7 C -0.810 4.810 8 S 2.754 3.246 9 O -0.976 6.976 10 O -0.969 6.969 11 N -0.685 5.685 12 C -0.010 4.010 13 C -0.460 4.460 14 H 0.129 0.871 15 C -0.194 4.194 16 N -0.529 5.529 17 Si 0.760 3.240 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.188 1.188 21 C -0.016 4.016 22 H 0.113 0.887 23 H 0.117 0.883 24 H 0.101 0.899 25 H 0.230 0.770 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.830 8.152 3.639 15.630 hybrid contribution 0.723 0.233 -0.683 1.021 sum -12.108 8.385 2.956 15.022 Atomic orbital electron populations 1.20884 0.85445 1.05355 1.04565 1.21566 1.00548 0.92664 1.00068 1.23716 0.87331 1.00255 0.89009 1.67250 1.10423 1.29272 1.15059 1.21367 0.88530 0.89530 0.93638 1.98496 1.05966 1.98036 1.95579 1.32249 1.09607 1.20558 1.18599 1.03069 0.72613 0.75178 0.73781 1.93444 1.64298 1.52504 1.87398 1.93479 1.59444 1.87247 1.56760 1.52988 1.22289 1.65973 1.27239 1.21126 0.93434 0.97466 0.89022 1.19662 0.90804 1.32385 1.03172 0.87113 1.25541 1.00148 0.97250 0.96463 1.70269 1.42271 1.25074 1.15288 0.85820 0.79429 0.80745 0.78014 1.20087 1.19982 1.18765 1.21660 0.89966 1.01552 0.88441 0.88719 0.88263 0.89942 0.76951 0.93846 0.92850 0.91946 0.92230 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.04 71.24 0.72 -0.48 16 2 C -0.15 -3.18 5.90 -19.77 -0.12 -3.30 16 3 C 0.15 3.59 10.86 84.67 0.92 4.50 16 4 N -0.51 -17.00 10.34 -186.69 -1.93 -18.93 16 5 C 0.23 9.19 7.26 84.70 0.61 9.81 16 6 Cl -0.01 -0.41 22.70 -2.72 -0.06 -0.48 16 7 C -0.72 -27.64 5.93 22.38 0.13 -27.51 16 8 S 2.67 120.46 5.14 -56.49 -0.29 120.17 16 9 O -0.99 -44.37 16.01 -128.00 -2.05 -46.42 16 10 O -0.98 -49.13 15.44 -128.00 -1.98 -51.10 16 11 N -0.85 -42.00 3.32 -364.89 -1.21 -43.21 16 12 C 0.14 6.25 8.68 127.77 1.11 7.36 16 13 C -0.33 -17.31 7.88 84.04 0.66 -16.64 16 14 H 0.11 5.82 4.67 -2.91 -0.01 5.81 16 15 C 0.01 0.52 4.93 84.86 0.42 0.94 16 16 N -0.89 -47.38 10.58 21.65 0.23 -47.15 16 17 Si 0.94 41.49 29.62 68.60 2.03 43.52 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 C 0.01 0.30 9.35 22.46 0.21 0.51 16 22 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 23 H 0.10 0.66 8.09 -2.39 -0.02 0.64 16 24 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 25 H 0.21 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.04 2.11 7.77 -2.39 -0.02 2.09 16 27 H 0.05 2.09 7.60 -2.39 -0.02 2.07 16 28 H 0.06 2.98 6.55 -2.38 -0.02 2.96 16 29 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 30 H 0.17 4.39 7.44 -2.91 -0.02 4.37 16 Total: -1.00 -67.11 280.01 0.59 -66.52 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.18 Total: 1.90 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.67 Total: -24.81 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -2.91 Total: -109.29 kcal Atomic # 8 Polarization: -93.50 SS G_CDS: -4.03 Total: -97.52 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 120.46 SS G_CDS: -0.29 Total: 120.17 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.06 Total: -0.48 kcal Total: -67.11 0.59 -66.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886401238.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.147 kcal (2) G-P(sol) polarization free energy of solvation -67.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds