Wall clock time and date at job start Tue Mar 31 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46648 * 2 1 4 4 C 1.52993 * 109.47432 * 120.00079 * 2 1 3 5 5 H 1.08997 * 109.47064 * 305.31813 * 4 2 1 6 6 C 1.53001 * 109.47187 * 65.31148 * 4 2 1 7 7 C 1.50699 * 109.47608 * 184.99815 * 6 4 2 8 8 C 1.38231 * 120.00238 * 269.73524 * 7 6 4 9 9 C 1.38235 * 119.99921 * 179.76538 * 8 7 6 10 10 C 1.38231 * 120.00137 * 0.50006 * 9 8 7 11 11 C 1.38242 * 119.99908 * 359.74677 * 10 9 8 12 12 C 1.38235 * 119.99924 * 0.02562 * 11 10 9 13 13 N 1.46900 * 109.47410 * 185.31286 * 4 2 1 14 14 C 1.46904 * 110.99692 * 301.54722 * 13 4 2 15 15 C 1.53001 * 109.46794 * 177.77270 * 14 13 4 16 16 H 1.09000 * 109.47445 * 54.99420 * 15 14 13 17 17 C 1.53000 * 109.47119 * 294.99670 * 15 14 13 18 18 C 1.53002 * 109.47083 * 174.99773 * 15 14 13 19 19 C 1.50700 * 109.46838 * 184.99732 * 18 15 14 20 20 H 1.07994 * 120.00357 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99771 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00232 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47145 * 60.00245 * 23 21 19 25 25 H 1.48499 * 109.47113 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47071 * 300.00099 * 23 21 19 27 27 H 1.08997 * 109.47040 * 299.99592 * 1 2 3 28 28 H 1.08994 * 109.47068 * 60.00073 * 1 2 3 29 29 H 1.08998 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47040 * 240.00408 * 2 1 3 31 31 H 1.09002 * 109.46543 * 176.48858 * 3 2 1 32 32 H 1.09003 * 109.47532 * 296.48401 * 3 2 1 33 33 H 1.09000 * 109.47184 * 56.49264 * 3 2 1 34 34 H 1.08998 * 109.47463 * 305.00249 * 6 4 2 35 35 H 1.09000 * 109.47031 * 64.99646 * 6 4 2 36 36 H 1.07997 * 119.99688 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99909 * 180.23043 * 9 8 7 38 38 H 1.07999 * 120.00583 * 179.72905 * 10 9 8 39 39 H 1.07999 * 119.99857 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00374 * 179.97438 * 12 11 10 41 41 H 1.00899 * 111.00076 * 177.59031 * 13 4 2 42 42 H 1.09000 * 109.46911 * 297.76929 * 14 13 4 43 43 H 1.08999 * 109.47154 * 57.77131 * 14 13 4 44 44 H 1.09000 * 109.46906 * 60.00034 * 17 15 14 45 45 H 1.09002 * 109.47437 * 180.02562 * 17 15 14 46 46 H 1.08993 * 109.47362 * 300.00401 * 17 15 14 47 47 H 1.08999 * 109.46710 * 305.00145 * 18 15 14 48 48 H 1.09005 * 109.46933 * 64.99922 * 18 15 14 49 49 H 0.97004 * 119.99405 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6012 -0.2654 2.1366 6 6 1.6421 -2.1971 1.1842 7 6 2.0361 -2.8807 2.4681 8 6 3.2827 -3.4664 2.5851 9 6 3.6458 -4.0892 3.7646 10 6 2.7584 -4.1354 4.8234 11 6 1.5098 -3.5542 4.7047 12 6 1.1484 -2.9272 3.5269 13 7 3.5035 -0.6111 1.3150 14 6 4.1290 -1.1837 0.1154 15 6 5.6460 -1.0012 0.1947 16 1 6.0156 -1.4318 1.1253 17 6 5.9829 0.4907 0.1539 18 6 6.3072 -1.7059 -0.9915 19 6 7.8055 -1.6315 -0.8484 20 1 8.2425 -1.1319 0.0036 21 6 8.6186 -2.2021 -1.8046 22 7 8.0864 -2.8110 -2.8418 23 14 10.4758 -2.1106 -1.6269 24 1 10.8856 -2.7760 -0.3642 25 1 11.1175 -2.7945 -2.7783 26 1 10.9007 -0.6879 -1.5974 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1282 1.4432 0.0629 32 1 1.7290 1.9379 -0.9198 33 1 1.6262 1.9742 0.8569 34 1 0.5639 -2.2770 1.0460 35 1 2.1519 -2.6744 0.3472 36 1 3.9742 -3.4344 1.7562 37 1 4.6212 -4.5435 3.8573 38 1 3.0404 -4.6258 5.7434 39 1 0.8163 -3.5906 5.5318 40 1 0.1728 -2.4735 3.4339 41 1 3.8616 -1.0460 2.1521 42 1 3.8936 -2.2463 0.0549 43 1 3.7477 -0.6761 -0.7706 44 1 5.5119 0.9928 0.9990 45 1 7.0637 0.6208 0.2100 46 1 5.6133 0.9214 -0.7765 47 1 5.9956 -2.7502 -1.0133 48 1 6.0060 -1.2174 -1.9183 49 1 8.6584 -3.2121 -3.5148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895748484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:16 Heat of formation + Delta-G solvation = -11.101521 kcal Electronic energy + Delta-G solvation = -23770.189033 eV Core-core repulsion = 20695.529342 eV Total energy + Delta-G solvation = -3074.659691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.81362 -38.02502 -35.38146 -33.19004 -32.45997 -31.17894 -30.81523 -28.07551 -26.89870 -26.53812 -25.28210 -23.41741 -22.55835 -22.47945 -20.95375 -19.49944 -18.71910 -16.79429 -16.26558 -15.65668 -15.37369 -15.25995 -14.86731 -14.47259 -14.16628 -14.05004 -13.59105 -13.32416 -13.14625 -12.80530 -12.64959 -12.39193 -12.22631 -12.13882 -11.96454 -11.54193 -11.43554 -11.33369 -11.24463 -10.97230 -10.85343 -10.79190 -10.63269 -10.46936 -10.36388 -10.24325 -10.04666 -9.62247 -9.09727 -8.93335 -8.92166 -8.75682 -8.30194 -7.93705 -5.95300 -3.96155 1.33954 1.38988 3.35714 3.40104 3.42694 3.76602 4.46290 4.55691 4.62742 4.83266 4.94455 5.01505 5.07862 5.15869 5.26414 5.27951 5.40522 5.43806 5.52316 5.59819 5.65362 5.69815 5.77085 5.84277 5.93784 5.96680 5.97629 6.01351 6.08066 6.17790 6.20953 6.25106 6.44573 6.45852 6.48511 6.54057 6.59588 6.66228 6.68133 6.75247 7.00961 7.08033 7.23109 7.25485 7.47554 7.71189 7.77091 7.89356 8.05292 8.49726 9.10145 9.67093 11.16138 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.004389 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.929035 B = 6377.498192 C = 7845.987176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.139 4.139 4 C 0.101 3.899 5 H 0.076 0.924 6 C -0.125 4.125 7 C -0.076 4.076 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.129 4.129 11 C -0.122 4.122 12 C -0.120 4.120 13 N -0.676 5.676 14 C 0.057 3.943 15 C -0.081 4.081 16 H 0.051 0.949 17 C -0.122 4.122 18 C 0.029 3.971 19 C -0.512 4.512 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.338 0.662 42 H 0.025 0.975 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.038 0.962 47 H 0.011 0.989 48 H 0.015 0.985 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.523 1.707 11.588 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.196 4.196 4 C -0.009 4.009 5 H 0.094 0.906 6 C -0.164 4.164 7 C -0.076 4.076 8 C -0.135 4.135 9 C -0.131 4.131 10 C -0.147 4.147 11 C -0.140 4.140 12 C -0.138 4.138 13 N -0.306 5.306 14 C -0.072 4.072 15 C -0.100 4.100 16 H 0.069 0.931 17 C -0.179 4.179 18 C -0.009 4.009 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.451 2.272 11.181 20.021 hybrid contribution 0.944 -1.140 0.171 1.490 sum -15.507 1.132 11.352 19.252 Atomic orbital electron populations 1.21900 0.95717 1.01394 1.01553 1.21154 0.94697 0.97283 0.97758 1.21726 1.03234 0.94515 1.00114 1.21573 0.89420 0.91664 0.98267 0.90600 1.21515 1.02103 0.97777 0.94960 1.19896 0.94155 0.97818 0.95772 1.21277 0.96243 0.97753 0.98275 1.21207 0.99587 0.98971 0.93334 1.21123 0.94267 1.00467 0.98820 1.21091 0.96654 0.98642 0.97583 1.20997 0.99367 1.00190 0.93279 1.60723 1.03194 1.61183 1.05486 1.22257 0.96022 0.96273 0.92608 1.21179 0.91542 0.96686 1.00619 0.93063 1.21583 1.00838 0.95786 0.99718 1.19102 0.94844 0.94825 0.92100 1.21205 0.91589 1.34975 1.07248 0.92686 1.25008 0.98486 0.95530 0.95452 1.69961 1.35063 1.37306 1.11374 0.86716 0.85992 0.78202 0.77428 1.20351 1.21401 1.20281 0.92889 0.92776 0.92805 0.91028 0.90469 0.93879 0.93499 0.90660 0.90315 0.85587 0.85976 0.86423 0.86468 0.86462 0.84335 0.95663 0.91194 0.93895 0.92963 0.94263 0.97093 0.96678 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.96 37.16 0.33 -1.07 16 2 C -0.09 -1.04 1.92 -90.62 -0.17 -1.21 16 3 C -0.14 -1.67 8.94 37.16 0.33 -1.34 16 4 C 0.10 1.20 2.12 -67.72 -0.14 1.06 16 5 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.12 -1.44 4.51 -27.88 -0.13 -1.56 16 7 C -0.08 -0.92 4.72 -104.62 -0.49 -1.41 16 8 C -0.12 -1.54 8.36 -39.59 -0.33 -1.87 16 9 C -0.11 -1.36 10.05 -39.58 -0.40 -1.76 16 10 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 11 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 12 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 13 N -0.68 -9.44 4.80 -106.73 -0.51 -9.95 16 14 C 0.06 0.94 3.91 -3.82 -0.01 0.92 16 15 C -0.08 -1.63 2.50 -90.62 -0.23 -1.86 16 16 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 18 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 19 C -0.51 -14.31 8.41 -34.44 -0.29 -14.60 16 20 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 23 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.48 6.47 -51.93 -0.34 0.14 16 30 H 0.07 0.93 6.63 -51.93 -0.34 0.58 16 31 H 0.08 1.09 7.02 -51.93 -0.36 0.72 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.77 6.30 -51.93 -0.33 0.44 16 35 H 0.08 1.03 6.18 -51.93 -0.32 0.71 16 36 H 0.13 1.81 6.73 -52.49 -0.35 1.46 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.34 4.84 7.01 -39.29 -0.28 4.56 16 42 H 0.03 0.43 5.19 -51.93 -0.27 0.16 16 43 H 0.07 1.20 6.07 -51.93 -0.32 0.88 16 44 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 45 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.11 15.07 5.65 5.65 Total: -1.00 -29.12 375.11 -10.42 -39.54 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.67 Total: 3.99 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -2.60 Total: -29.73 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.22 Total: -36.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.12 -10.42 -39.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895748484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.436 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds