Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46648 * 2 1 4 4 C 1.52993 * 109.47432 * 120.00079 * 2 1 3 5 5 H 1.08997 * 109.47064 * 305.31813 * 4 2 1 6 6 C 1.53001 * 109.47187 * 65.31148 * 4 2 1 7 7 C 1.50699 * 109.47608 * 184.99815 * 6 4 2 8 8 C 1.38231 * 120.00238 * 269.73524 * 7 6 4 9 9 C 1.38235 * 119.99921 * 179.76538 * 8 7 6 10 10 C 1.38231 * 120.00137 * 0.50006 * 9 8 7 11 11 C 1.38242 * 119.99908 * 359.74677 * 10 9 8 12 12 C 1.38235 * 119.99924 * 0.02562 * 11 10 9 13 13 N 1.46900 * 109.47410 * 185.31286 * 4 2 1 14 14 C 1.46904 * 110.99692 * 301.54722 * 13 4 2 15 15 C 1.53001 * 109.46794 * 177.77270 * 14 13 4 16 16 H 1.09000 * 109.47445 * 54.99420 * 15 14 13 17 17 C 1.53000 * 109.47119 * 294.99670 * 15 14 13 18 18 C 1.53002 * 109.47083 * 174.99773 * 15 14 13 19 19 C 1.50700 * 109.46838 * 184.99732 * 18 15 14 20 20 H 1.07994 * 120.00357 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99771 * 179.97438 * 19 18 15 22 22 N 1.31520 * 119.99653 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00232 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47145 * 60.00245 * 23 21 19 25 25 H 1.48499 * 109.47113 * 180.02562 * 23 21 19 26 26 H 1.48509 * 109.47071 * 300.00099 * 23 21 19 27 27 H 1.08997 * 109.47040 * 299.99592 * 1 2 3 28 28 H 1.08994 * 109.47068 * 60.00073 * 1 2 3 29 29 H 1.08998 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47040 * 240.00408 * 2 1 3 31 31 H 1.09002 * 109.46543 * 176.48858 * 3 2 1 32 32 H 1.09003 * 109.47532 * 296.48401 * 3 2 1 33 33 H 1.09000 * 109.47184 * 56.49264 * 3 2 1 34 34 H 1.08998 * 109.47463 * 305.00249 * 6 4 2 35 35 H 1.09000 * 109.47031 * 64.99646 * 6 4 2 36 36 H 1.07997 * 119.99688 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99909 * 180.23043 * 9 8 7 38 38 H 1.07999 * 120.00583 * 179.72905 * 10 9 8 39 39 H 1.07999 * 119.99857 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00374 * 179.97438 * 12 11 10 41 41 H 1.00899 * 111.00076 * 177.59031 * 13 4 2 42 42 H 1.09000 * 109.46911 * 297.76929 * 14 13 4 43 43 H 1.08999 * 109.47154 * 57.77131 * 14 13 4 44 44 H 1.09000 * 109.46906 * 60.00034 * 17 15 14 45 45 H 1.09002 * 109.47437 * 180.02562 * 17 15 14 46 46 H 1.08993 * 109.47362 * 300.00401 * 17 15 14 47 47 H 1.08999 * 109.46710 * 305.00145 * 18 15 14 48 48 H 1.09005 * 109.46933 * 64.99922 * 18 15 14 49 49 H 0.97004 * 119.99405 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6012 -0.2654 2.1366 6 6 1.6421 -2.1971 1.1842 7 6 2.0361 -2.8807 2.4681 8 6 3.2827 -3.4664 2.5851 9 6 3.6458 -4.0892 3.7646 10 6 2.7584 -4.1354 4.8234 11 6 1.5098 -3.5542 4.7047 12 6 1.1484 -2.9272 3.5269 13 7 3.5035 -0.6111 1.3150 14 6 4.1290 -1.1837 0.1154 15 6 5.6460 -1.0012 0.1947 16 1 6.0156 -1.4318 1.1253 17 6 5.9829 0.4907 0.1539 18 6 6.3072 -1.7059 -0.9915 19 6 7.8055 -1.6315 -0.8484 20 1 8.2425 -1.1319 0.0036 21 6 8.6186 -2.2021 -1.8046 22 7 8.0864 -2.8110 -2.8418 23 14 10.4758 -2.1106 -1.6269 24 1 10.8856 -2.7760 -0.3642 25 1 11.1175 -2.7945 -2.7783 26 1 10.9007 -0.6879 -1.5974 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1282 1.4432 0.0629 32 1 1.7290 1.9379 -0.9198 33 1 1.6262 1.9742 0.8569 34 1 0.5639 -2.2770 1.0460 35 1 2.1519 -2.6744 0.3472 36 1 3.9742 -3.4344 1.7562 37 1 4.6212 -4.5435 3.8573 38 1 3.0404 -4.6258 5.7434 39 1 0.8163 -3.5906 5.5318 40 1 0.1728 -2.4735 3.4339 41 1 3.8616 -1.0460 2.1521 42 1 3.8936 -2.2463 0.0549 43 1 3.7477 -0.6761 -0.7706 44 1 5.5119 0.9928 0.9990 45 1 7.0637 0.6208 0.2100 46 1 5.6133 0.9214 -0.7765 47 1 5.9956 -2.7502 -1.0133 48 1 6.0060 -1.2174 -1.9183 49 1 8.6584 -3.2121 -3.5148 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895748484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = -24.673468 kcal Electronic energy + Delta-G solvation = -23770.777557 eV Core-core repulsion = 20695.529342 eV Total energy + Delta-G solvation = -3075.248215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77729 -39.06237 -36.98195 -34.67559 -33.86977 -32.51575 -31.70905 -29.28147 -28.52776 -27.66138 -26.67122 -24.89245 -23.88905 -23.43177 -21.84372 -21.07102 -19.90950 -18.43429 -17.64534 -16.85970 -16.50034 -16.43294 -16.18801 -15.77831 -15.53311 -15.15099 -14.72101 -14.51554 -14.25473 -14.23565 -13.85539 -13.67178 -13.40913 -13.27767 -13.15885 -12.94227 -12.86264 -12.73085 -12.59843 -12.35134 -12.19041 -12.11415 -12.00269 -11.82997 -11.66338 -11.57710 -11.29245 -11.20286 -10.98789 -10.86152 -10.52578 -9.81819 -9.68272 -9.09717 -8.17030 -6.26005 0.46643 0.51086 1.39225 1.41920 1.49573 2.41909 2.88874 3.16246 3.37442 3.69920 3.95759 4.03998 4.15802 4.18050 4.22499 4.29899 4.31976 4.37161 4.44754 4.55225 4.59343 4.67113 4.72184 4.78181 4.89650 4.91037 4.92214 4.98864 5.05610 5.10367 5.12226 5.16896 5.19216 5.27784 5.30954 5.37887 5.48037 5.51212 5.55894 5.57972 5.61034 5.66073 5.67469 5.75345 5.83641 5.90153 6.15335 6.19228 6.34489 6.57013 6.89724 7.42104 8.94751 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.004389 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.929035 B = 6377.498192 C = 7845.987176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.136 4.136 4 C 0.106 3.894 5 H 0.090 0.910 6 C -0.117 4.117 7 C -0.085 4.085 8 C -0.138 4.138 9 C -0.129 4.129 10 C -0.131 4.131 11 C -0.120 4.120 12 C -0.121 4.121 13 N -0.671 5.671 14 C 0.077 3.923 15 C -0.072 4.072 16 H 0.047 0.953 17 C -0.110 4.110 18 C 0.036 3.964 19 C -0.529 4.529 20 H 0.059 0.941 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.958 3.042 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.268 1.268 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.338 0.662 42 H 0.016 0.984 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.034 0.966 47 H -0.017 1.017 48 H -0.012 1.012 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.844 2.481 13.732 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.193 4.193 4 C -0.004 4.004 5 H 0.108 0.892 6 C -0.156 4.156 7 C -0.085 4.085 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.149 4.149 11 C -0.138 4.138 12 C -0.139 4.139 13 N -0.301 5.301 14 C -0.052 4.052 15 C -0.091 4.091 16 H 0.065 0.935 17 C -0.168 4.168 18 C -0.001 4.001 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.192 1.192 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.034 0.966 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.001 0.999 48 H 0.006 0.994 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.782 3.055 13.339 22.438 hybrid contribution 1.305 -1.405 -0.475 1.975 sum -16.477 1.651 12.864 20.969 Atomic orbital electron populations 1.21848 0.93598 1.02137 1.02410 1.21146 0.96452 0.96646 0.96633 1.21681 1.01713 0.95010 1.00885 1.21622 0.87651 0.92126 0.98991 0.89237 1.21427 1.02946 0.97097 0.94145 1.19949 0.94010 0.98122 0.96426 1.21185 0.96760 0.99574 0.98147 1.21344 1.00277 0.99395 0.93667 1.21416 0.94247 1.00184 0.99034 1.21473 0.96761 0.97375 0.98180 1.21282 0.99920 0.99869 0.92857 1.60674 1.04765 1.60500 1.04142 1.21868 0.93669 0.95886 0.93757 1.20984 0.93634 0.96681 0.97801 0.93489 1.21464 0.99757 0.95025 1.00527 1.18971 0.94550 0.93436 0.93171 1.21601 0.92909 1.34793 1.07357 0.92288 1.25925 1.03762 0.95062 0.95042 1.70101 1.36960 1.38240 1.12267 0.85600 0.79685 0.78660 0.77721 1.19311 1.20970 1.19246 0.91594 0.92378 0.92120 0.93038 0.92770 0.93449 0.92339 0.88720 0.92584 0.88169 0.85938 0.84241 0.83589 0.84145 0.84381 0.96563 0.91779 0.91476 0.94701 0.94667 0.99894 0.99370 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.96 71.99 0.65 -1.71 16 2 C -0.09 -1.97 1.92 -10.79 -0.02 -2.00 16 3 C -0.14 -3.11 8.94 71.98 0.64 -2.46 16 4 C 0.11 2.38 2.12 44.91 0.10 2.48 16 5 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.12 -2.62 4.51 29.85 0.13 -2.48 16 7 C -0.08 -1.97 4.72 -19.87 -0.09 -2.06 16 8 C -0.14 -3.72 8.36 22.27 0.19 -3.53 16 9 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 10 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 11 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 12 C -0.12 -2.30 9.70 22.27 0.22 -2.09 16 13 N -0.67 -18.64 4.80 -491.57 -2.36 -21.00 16 14 C 0.08 2.66 3.91 86.30 0.34 3.00 16 15 C -0.07 -3.00 2.50 -10.79 -0.03 -3.03 16 16 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 17 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 18 C 0.04 1.94 4.45 29.85 0.13 2.08 16 19 C -0.53 -30.39 8.41 25.60 0.22 -30.17 16 20 H 0.06 3.28 7.06 -2.91 -0.02 3.25 16 21 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 22 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 23 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.92 6.47 -2.39 -0.02 0.91 16 30 H 0.05 1.34 6.63 -2.39 -0.02 1.33 16 31 H 0.05 1.49 7.02 -2.39 -0.02 1.47 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.73 6.30 -2.39 -0.02 1.71 16 35 H 0.06 1.51 6.18 -2.39 -0.01 1.50 16 36 H 0.10 3.14 6.73 -2.91 -0.02 3.12 16 37 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.34 9.63 7.01 -89.69 -0.63 9.00 16 42 H 0.02 0.59 5.19 -2.39 -0.01 0.58 16 43 H 0.06 2.29 6.07 -2.39 -0.01 2.28 16 44 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 45 H 0.03 1.45 6.95 -2.39 -0.02 1.44 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 47 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 48 H -0.01 -0.71 8.14 -2.38 -0.02 -0.72 16 49 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.28 375.11 4.46 -59.81 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.27 Total: 23.99 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 4.24 Total: -52.33 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.07 Total: -78.61 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.28 4.46 -59.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895748484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.137 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds