Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47140 * 120.00459 * 2 1 3 5 5 H 1.09004 * 109.47221 * 59.99972 * 4 2 1 6 6 C 1.53000 * 109.46850 * 299.99649 * 4 2 1 7 7 C 1.50706 * 109.46942 * 175.00099 * 6 4 2 8 8 C 1.38236 * 120.00192 * 269.72794 * 7 6 4 9 9 C 1.38234 * 119.99923 * 179.76535 * 8 7 6 10 10 C 1.38230 * 119.99934 * 0.50600 * 9 8 7 11 11 C 1.38237 * 120.00433 * 359.74633 * 10 9 8 12 12 C 1.38234 * 119.99473 * 0.02562 * 11 10 9 13 13 N 1.46905 * 109.47094 * 179.97438 * 4 2 1 14 14 C 1.46901 * 110.99870 * 274.99984 * 13 4 2 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 4 16 16 H 1.09000 * 109.46869 * 304.99619 * 15 14 13 17 17 C 1.53001 * 109.47245 * 64.99745 * 15 14 13 18 18 C 1.52999 * 109.46840 * 184.99885 * 15 14 13 19 19 C 1.50700 * 109.46923 * 174.99809 * 18 15 14 20 20 H 1.07998 * 120.00252 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99978 * 179.97438 * 19 18 15 22 22 N 1.31510 * 119.99827 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47140 * 89.99967 * 23 21 19 25 25 H 1.48495 * 109.47653 * 210.00271 * 23 21 19 26 26 H 1.48502 * 109.46918 * 330.00445 * 23 21 19 27 27 H 1.09006 * 109.46594 * 299.99803 * 1 2 3 28 28 H 1.08997 * 109.47282 * 59.99710 * 1 2 3 29 29 H 1.09003 * 109.46910 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46594 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47216 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47239 * 300.00316 * 3 2 1 33 33 H 1.09000 * 109.47240 * 60.00136 * 3 2 1 34 34 H 1.08994 * 109.47174 * 295.00027 * 6 4 2 35 35 H 1.08993 * 109.47332 * 55.00709 * 6 4 2 36 36 H 1.08000 * 119.99784 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.99661 * 180.22621 * 9 8 7 38 38 H 1.07999 * 119.99725 * 179.72060 * 10 9 8 39 39 H 1.07994 * 120.00334 * 179.97438 * 11 10 9 40 40 H 1.08004 * 120.00003 * 179.97438 * 12 11 10 41 41 H 1.00901 * 110.99869 * 151.04696 * 13 4 2 42 42 H 1.09004 * 109.47031 * 299.99620 * 14 13 4 43 43 H 1.08995 * 109.47111 * 59.99900 * 14 13 4 44 44 H 1.08997 * 109.47303 * 300.00187 * 17 15 14 45 45 H 1.09007 * 109.46679 * 59.99874 * 17 15 14 46 46 H 1.08993 * 109.46950 * 179.97438 * 17 15 14 47 47 H 1.08996 * 109.47107 * 294.99983 * 18 15 14 48 48 H 1.09000 * 109.47382 * 54.99981 * 18 15 14 49 49 H 0.96999 * 120.00150 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2491 6 6 1.5301 -0.0001 2.4984 7 6 1.9288 -0.7785 3.7258 8 6 1.0862 -1.7506 4.2317 9 6 1.4541 -2.4679 5.3547 10 6 2.6599 -2.2059 5.9777 11 6 3.5002 -1.2302 5.4749 12 6 3.1344 -0.5162 4.3492 13 7 3.5091 -0.7219 1.2489 14 6 4.0349 -1.8455 0.4622 15 6 5.5644 -1.8130 0.4858 16 1 5.9125 -0.8397 0.1398 17 6 6.0577 -2.0529 1.9141 18 6 6.1120 -2.9067 -0.4333 19 6 7.6132 -2.7966 -0.5062 20 1 8.1255 -2.0241 0.0479 21 6 8.3327 -3.6827 -1.2796 22 7 7.7089 -4.6237 -1.9540 23 14 10.1934 -3.5458 -1.3705 24 1 10.8036 -4.3717 -0.2977 25 1 10.6614 -4.0295 -2.6942 26 1 10.5947 -2.1272 -1.1917 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.9647 0.9984 2.5444 35 1 0.4438 0.0781 2.4549 36 1 0.1419 -1.9519 3.7477 37 1 0.7974 -3.2298 5.7478 38 1 2.9452 -2.7632 6.8577 39 1 4.4420 -1.0253 5.9619 40 1 3.7907 0.2464 3.9565 41 1 3.8709 -0.7392 2.1906 42 1 3.6852 -2.7846 0.8913 43 1 3.6852 -1.7637 -0.5669 44 1 5.6676 -1.2737 2.5689 45 1 5.7095 -3.0262 2.2600 46 1 7.1472 -2.0302 1.9308 47 1 5.8382 -3.8847 -0.0375 48 1 5.6901 -2.7876 -1.4313 49 1 8.2150 -5.2470 -2.4983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895748485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -12.464548 kcal Electronic energy + Delta-G solvation = -23587.624895 eV Core-core repulsion = 20512.906099 eV Total energy + Delta-G solvation = -3074.718796 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77797 -37.90379 -35.70202 -33.07157 -32.52204 -31.21803 -30.92697 -27.87312 -27.07327 -26.71351 -25.15818 -23.72386 -22.70368 -22.10915 -21.37785 -18.99961 -18.71445 -16.91133 -16.39472 -15.72787 -15.61499 -15.34016 -14.63223 -14.53777 -14.29709 -13.82291 -13.78059 -13.44795 -12.87746 -12.78654 -12.75176 -12.67361 -12.44863 -12.11973 -11.91632 -11.66817 -11.41167 -11.36242 -11.19931 -10.94932 -10.85045 -10.80796 -10.75182 -10.57208 -10.36778 -10.29603 -10.06458 -9.65686 -9.10888 -8.99482 -8.92114 -8.70853 -8.29643 -8.01097 -5.94293 -3.95207 1.28067 1.32559 3.34900 3.41202 3.44713 3.70430 4.42473 4.52900 4.63433 4.78630 4.89413 4.93422 5.03674 5.12564 5.25386 5.30230 5.41460 5.41739 5.48565 5.53613 5.59934 5.71981 5.76341 5.82472 5.88573 5.93119 5.95733 5.98363 6.03049 6.09373 6.17683 6.23834 6.34058 6.40038 6.45007 6.46468 6.53232 6.54995 6.60617 6.63759 6.93914 7.02712 7.15446 7.23086 7.48643 7.73761 7.79251 7.91494 8.06421 8.50464 9.11209 9.67950 11.17293 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.004025 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.410687 B = 6954.332452 C = 8248.307751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.138 4.138 4 C 0.097 3.903 5 H 0.041 0.959 6 C -0.089 4.089 7 C -0.083 4.083 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.127 4.127 11 C -0.114 4.114 12 C -0.119 4.119 13 N -0.685 5.685 14 C 0.066 3.934 15 C -0.083 4.083 16 H 0.064 0.936 17 C -0.132 4.132 18 C 0.028 3.972 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.340 0.660 42 H 0.020 0.980 43 H 0.065 0.935 44 H 0.030 0.970 45 H 0.039 0.961 46 H 0.061 0.939 47 H 0.013 0.987 48 H 0.014 0.986 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.808 9.011 12.419 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.195 4.195 4 C -0.013 4.013 5 H 0.058 0.942 6 C -0.126 4.126 7 C -0.083 4.083 8 C -0.137 4.137 9 C -0.137 4.137 10 C -0.145 4.145 11 C -0.132 4.132 12 C -0.137 4.137 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.102 4.102 16 H 0.083 0.917 17 C -0.189 4.189 18 C -0.009 4.009 19 C -0.550 4.550 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.039 0.961 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.722 9.314 11.788 21.746 hybrid contribution 0.884 -0.986 0.472 1.406 sum -14.838 8.328 12.260 20.972 Atomic orbital electron populations 1.21936 0.95903 1.01401 1.01541 1.21069 0.94227 0.97235 0.97894 1.21735 1.02794 0.94834 1.00138 1.21471 0.89153 0.97267 0.93397 0.94152 1.20969 1.01505 0.99127 0.90986 1.19995 0.94666 0.96961 0.96668 1.21036 0.99699 0.96353 0.96654 1.21125 0.96904 0.99525 0.96164 1.21139 0.94756 0.98305 1.00270 1.21179 0.99474 0.96095 0.96428 1.21148 0.96255 1.00390 0.95891 1.60697 1.05489 1.46579 1.19187 1.22147 0.96779 0.89974 0.97414 1.21204 0.91327 1.01358 0.96293 0.91735 1.21720 1.01961 0.98957 0.96271 1.19100 0.95469 0.92601 0.93737 1.21241 0.92119 1.14172 1.27428 0.92603 1.25014 0.98258 0.95518 0.95737 1.69967 1.35357 1.17872 1.30509 0.86645 0.86137 0.78280 0.77247 1.20794 1.21321 1.19884 0.92630 0.92764 0.93041 0.91049 0.90947 0.93915 0.93395 0.89866 0.90245 0.86349 0.86315 0.86297 0.86002 0.85663 0.83850 0.96146 0.91612 0.95140 0.94161 0.91972 0.96863 0.96716 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.85 37.16 0.33 -1.11 16 2 C -0.09 -1.00 2.83 -90.62 -0.26 -1.26 16 3 C -0.14 -1.57 8.68 37.16 0.32 -1.24 16 4 C 0.10 1.22 1.85 -67.71 -0.13 1.09 16 5 H 0.04 0.56 7.80 -51.93 -0.40 0.15 16 6 C -0.09 -0.93 4.26 -27.88 -0.12 -1.05 16 7 C -0.08 -0.94 4.84 -104.62 -0.51 -1.45 16 8 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 9 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 10 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.11 -1.25 10.05 -39.58 -0.40 -1.64 16 12 C -0.12 -1.37 8.04 -39.58 -0.32 -1.68 16 13 N -0.69 -10.17 5.54 -106.72 -0.59 -10.76 16 14 C 0.07 1.18 4.94 -3.82 -0.02 1.16 16 15 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 16 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 17 C -0.13 -2.54 8.78 37.16 0.33 -2.21 16 18 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 19 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 20 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 23 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.05 0.47 6.32 -51.93 -0.33 0.14 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.96 7.45 -51.93 -0.39 0.58 16 31 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.49 6.54 -51.93 -0.34 0.15 16 34 H 0.08 0.87 6.65 -51.93 -0.35 0.52 16 35 H 0.08 0.73 6.12 -51.93 -0.32 0.41 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.13 1.37 7.53 -52.48 -0.40 0.97 16 41 H 0.34 4.94 3.75 -39.29 -0.15 4.79 16 42 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 43 H 0.07 1.22 7.43 -51.93 -0.39 0.83 16 44 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -30.10 376.94 -10.61 -40.71 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.73 Total: 3.09 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.69 Total: -29.06 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.14 Total: -37.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.10 -10.61 -40.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895748485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.246 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds