Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47202 * 2 1 4 4 C 1.52999 * 109.47140 * 120.00459 * 2 1 3 5 5 H 1.09004 * 109.47221 * 59.99972 * 4 2 1 6 6 C 1.53000 * 109.46850 * 299.99649 * 4 2 1 7 7 C 1.50706 * 109.46942 * 175.00099 * 6 4 2 8 8 C 1.38236 * 120.00192 * 269.72794 * 7 6 4 9 9 C 1.38234 * 119.99923 * 179.76535 * 8 7 6 10 10 C 1.38230 * 119.99934 * 0.50600 * 9 8 7 11 11 C 1.38237 * 120.00433 * 359.74633 * 10 9 8 12 12 C 1.38234 * 119.99473 * 0.02562 * 11 10 9 13 13 N 1.46905 * 109.47094 * 179.97438 * 4 2 1 14 14 C 1.46901 * 110.99870 * 274.99984 * 13 4 2 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 4 16 16 H 1.09000 * 109.46869 * 304.99619 * 15 14 13 17 17 C 1.53001 * 109.47245 * 64.99745 * 15 14 13 18 18 C 1.52999 * 109.46840 * 184.99885 * 15 14 13 19 19 C 1.50700 * 109.46923 * 174.99809 * 18 15 14 20 20 H 1.07998 * 120.00252 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99978 * 179.97438 * 19 18 15 22 22 N 1.31510 * 119.99827 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00254 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47140 * 89.99967 * 23 21 19 25 25 H 1.48495 * 109.47653 * 210.00271 * 23 21 19 26 26 H 1.48502 * 109.46918 * 330.00445 * 23 21 19 27 27 H 1.09006 * 109.46594 * 299.99803 * 1 2 3 28 28 H 1.08997 * 109.47282 * 59.99710 * 1 2 3 29 29 H 1.09003 * 109.46910 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46594 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47216 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47239 * 300.00316 * 3 2 1 33 33 H 1.09000 * 109.47240 * 60.00136 * 3 2 1 34 34 H 1.08994 * 109.47174 * 295.00027 * 6 4 2 35 35 H 1.08993 * 109.47332 * 55.00709 * 6 4 2 36 36 H 1.08000 * 119.99784 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.99661 * 180.22621 * 9 8 7 38 38 H 1.07999 * 119.99725 * 179.72060 * 10 9 8 39 39 H 1.07994 * 120.00334 * 179.97438 * 11 10 9 40 40 H 1.08004 * 120.00003 * 179.97438 * 12 11 10 41 41 H 1.00901 * 110.99869 * 151.04696 * 13 4 2 42 42 H 1.09004 * 109.47031 * 299.99620 * 14 13 4 43 43 H 1.08995 * 109.47111 * 59.99900 * 14 13 4 44 44 H 1.08997 * 109.47303 * 300.00187 * 17 15 14 45 45 H 1.09007 * 109.46679 * 59.99874 * 17 15 14 46 46 H 1.08993 * 109.46950 * 179.97438 * 17 15 14 47 47 H 1.08996 * 109.47107 * 294.99983 * 18 15 14 48 48 H 1.09000 * 109.47382 * 54.99981 * 18 15 14 49 49 H 0.96999 * 120.00150 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7490 1.2491 6 6 1.5301 -0.0001 2.4984 7 6 1.9288 -0.7785 3.7258 8 6 1.0862 -1.7506 4.2317 9 6 1.4541 -2.4679 5.3547 10 6 2.6599 -2.2059 5.9777 11 6 3.5002 -1.2302 5.4749 12 6 3.1344 -0.5162 4.3492 13 7 3.5091 -0.7219 1.2489 14 6 4.0349 -1.8455 0.4622 15 6 5.5644 -1.8130 0.4858 16 1 5.9125 -0.8397 0.1398 17 6 6.0577 -2.0529 1.9141 18 6 6.1120 -2.9067 -0.4333 19 6 7.6132 -2.7966 -0.5062 20 1 8.1255 -2.0241 0.0479 21 6 8.3327 -3.6827 -1.2796 22 7 7.7089 -4.6237 -1.9540 23 14 10.1934 -3.5458 -1.3705 24 1 10.8036 -4.3717 -0.2977 25 1 10.6614 -4.0295 -2.6942 26 1 10.5947 -2.1272 -1.1917 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.9647 0.9984 2.5444 35 1 0.4438 0.0781 2.4549 36 1 0.1419 -1.9519 3.7477 37 1 0.7974 -3.2298 5.7478 38 1 2.9452 -2.7632 6.8577 39 1 4.4420 -1.0253 5.9619 40 1 3.7907 0.2464 3.9565 41 1 3.8709 -0.7392 2.1906 42 1 3.6852 -2.7846 0.8913 43 1 3.6852 -1.7637 -0.5669 44 1 5.6676 -1.2737 2.5689 45 1 5.7095 -3.0262 2.2600 46 1 7.1472 -2.0302 1.9308 47 1 5.8382 -3.8847 -0.0375 48 1 5.6901 -2.7876 -1.4313 49 1 8.2150 -5.2470 -2.4983 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895748485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -26.767407 kcal Electronic energy + Delta-G solvation = -23588.245114 eV Core-core repulsion = 20512.906099 eV Total energy + Delta-G solvation = -3075.339015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66910 -38.95900 -37.26686 -34.80965 -33.65229 -32.66537 -31.74726 -29.17498 -28.43386 -27.90116 -26.69012 -24.90759 -24.06151 -23.30680 -22.21759 -20.67826 -19.76708 -18.52601 -17.72120 -16.93560 -16.64648 -16.50015 -16.28976 -15.55392 -15.41228 -15.34036 -14.86257 -14.34531 -14.26710 -14.15168 -13.89217 -13.63777 -13.58306 -13.52900 -13.29658 -13.05521 -12.77725 -12.70184 -12.59731 -12.26674 -12.23737 -12.08306 -11.92002 -11.75451 -11.73490 -11.57115 -11.39778 -11.30026 -11.05737 -10.89584 -10.53689 -9.81045 -9.55027 -9.26648 -8.17231 -6.26603 0.46597 0.51733 1.39971 1.41219 1.52328 2.42164 2.88569 3.16160 3.27926 3.77076 3.92427 4.01501 4.15946 4.19305 4.22519 4.28113 4.32069 4.36306 4.44567 4.47740 4.54985 4.66110 4.67452 4.75452 4.77274 4.83569 4.91379 4.93234 5.00828 5.09925 5.14812 5.18238 5.20782 5.21727 5.25988 5.36097 5.37732 5.45616 5.54192 5.55521 5.61024 5.64988 5.65623 5.73003 5.79701 5.88678 6.14321 6.17714 6.31980 6.58289 6.89105 7.41695 8.95036 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.004025 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.410687 B = 6954.332452 C = 8248.307751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.133 4.133 4 C 0.099 3.901 5 H 0.028 0.972 6 C -0.079 4.079 7 C -0.095 4.095 8 C -0.130 4.130 9 C -0.128 4.128 10 C -0.136 4.136 11 C -0.126 4.126 12 C -0.133 4.133 13 N -0.681 5.681 14 C 0.081 3.919 15 C -0.073 4.073 16 H 0.058 0.942 17 C -0.122 4.122 18 C 0.035 3.965 19 C -0.528 4.528 20 H 0.062 0.938 21 C -0.002 4.002 22 N -0.936 5.936 23 Si 0.961 3.039 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.263 1.263 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.343 0.657 42 H 0.011 0.989 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.048 0.952 47 H -0.014 1.014 48 H -0.015 1.015 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 10.192 13.857 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.191 4.191 4 C -0.011 4.011 5 H 0.046 0.954 6 C -0.116 4.116 7 C -0.095 4.095 8 C -0.148 4.148 9 C -0.145 4.145 10 C -0.154 4.154 11 C -0.144 4.144 12 C -0.151 4.151 13 N -0.315 5.315 14 C -0.049 4.049 15 C -0.092 4.092 16 H 0.077 0.923 17 C -0.179 4.179 18 C -0.003 4.003 19 C -0.566 4.566 20 H 0.080 0.920 21 C -0.199 4.199 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.187 1.187 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.093 10.511 13.242 23.341 hybrid contribution 0.945 -1.377 0.032 1.670 sum -15.148 9.135 13.274 22.116 Atomic orbital electron populations 1.21892 0.93813 1.01808 1.02732 1.21064 0.95973 0.97105 0.96355 1.21686 1.01322 0.94704 1.01344 1.21524 0.87342 0.97142 0.95101 0.95376 1.20904 1.02563 0.98736 0.89399 1.20130 0.94911 0.97463 0.97042 1.21301 1.00301 0.96242 0.96944 1.21443 0.97249 0.99814 0.96040 1.21448 0.94764 0.98271 1.00872 1.21434 1.00222 0.96243 0.96504 1.21300 0.96586 1.00837 0.96416 1.60651 1.07293 1.44526 1.19019 1.21815 0.94775 0.90806 0.97487 1.21000 0.93226 0.98804 0.96198 0.92336 1.21604 1.01018 0.99813 0.95495 1.18982 0.95021 0.93067 0.93225 1.21626 0.93241 1.14299 1.27430 0.92020 1.25956 1.03677 0.95043 0.95244 1.70108 1.37502 1.18781 1.31315 0.85500 0.79605 0.78847 0.77436 1.19846 1.20924 1.18686 0.90947 0.92063 0.93058 0.93544 0.93143 0.93179 0.91730 0.89448 0.88350 0.84986 0.84436 0.84553 0.84785 0.85449 0.83447 0.97110 0.92705 0.91933 0.94701 0.93334 0.99584 0.99640 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.85 71.98 0.64 -1.85 16 2 C -0.09 -1.94 2.83 -10.79 -0.03 -1.98 16 3 C -0.13 -2.86 8.68 71.98 0.63 -2.23 16 4 C 0.10 2.38 1.85 44.91 0.08 2.47 16 5 H 0.03 0.76 7.80 -2.38 -0.02 0.75 16 6 C -0.08 -1.50 4.26 29.85 0.13 -1.37 16 7 C -0.10 -2.01 4.84 -19.86 -0.10 -2.10 16 8 C -0.13 -2.59 9.70 22.27 0.22 -2.37 16 9 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 10 C -0.14 -2.61 10.05 22.27 0.22 -2.39 16 11 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 12 C -0.13 -2.87 8.04 22.27 0.18 -2.69 16 13 N -0.68 -19.92 5.54 -491.55 -2.73 -22.65 16 14 C 0.08 2.97 4.94 86.30 0.43 3.40 16 15 C -0.07 -3.13 2.55 -10.79 -0.03 -3.16 16 16 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 17 C -0.12 -4.66 8.78 71.98 0.63 -4.03 16 18 C 0.03 1.88 4.45 29.85 0.13 2.01 16 19 C -0.53 -30.43 8.41 25.60 0.22 -30.22 16 20 H 0.06 3.41 7.06 -2.91 -0.02 3.39 16 21 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 22 N -0.94 -58.23 13.29 21.45 0.28 -57.94 16 23 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 27 H 0.07 1.01 6.32 -2.38 -0.02 0.99 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.05 1.28 7.45 -2.38 -0.02 1.26 16 31 H 0.05 1.30 7.60 -2.39 -0.02 1.28 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.16 6.54 -2.39 -0.02 1.14 16 34 H 0.09 1.61 6.65 -2.39 -0.02 1.60 16 35 H 0.10 1.51 6.12 -2.39 -0.01 1.50 16 36 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.13 2.59 7.53 -2.91 -0.02 2.57 16 41 H 0.34 9.61 3.75 -89.69 -0.34 9.28 16 42 H 0.01 0.41 8.05 -2.39 -0.02 0.39 16 43 H 0.05 2.13 7.43 -2.39 -0.02 2.11 16 44 H 0.06 1.97 6.68 -2.39 -0.02 1.96 16 45 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 46 H 0.05 1.97 6.95 -2.39 -0.02 1.96 16 47 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 48 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -65.65 376.94 4.39 -61.26 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.56 Total: 22.97 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 4.25 Total: -50.73 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -2.44 Total: -80.59 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.65 4.39 -61.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895748485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.491 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds