Wall clock time and date at job start Tue Mar 31 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00153 * 2 1 4 4 H 1.48504 * 109.46832 * 270.00110 * 3 2 1 5 5 H 1.48500 * 109.47037 * 29.99986 * 3 2 1 6 6 H 1.48501 * 109.47346 * 150.00015 * 3 2 1 7 7 C 1.37878 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99163 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00491 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47350 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.34732 * 117.00395 * 180.02562 * 11 10 9 13 13 O 1.21499 * 119.99785 * 359.97438 * 12 11 10 14 14 C 1.47518 * 120.00359 * 180.02562 * 12 11 10 15 15 C 1.39765 * 120.12482 * 359.97438 * 14 12 11 16 16 C 1.37955 * 119.86066 * 179.97438 * 15 14 12 17 17 F 1.35103 * 119.94276 * 180.02562 * 16 15 14 18 18 C 1.38923 * 120.11482 * 0.02562 * 16 15 14 19 19 F 1.35098 * 119.87252 * 180.02562 * 18 16 15 20 20 C 1.38516 * 120.25640 * 0.02562 * 18 16 15 21 21 C 1.38044 * 120.13569 * 359.97438 * 20 18 16 22 22 Cl 1.73601 * 120.05588 * 180.02562 * 21 20 18 23 23 H 0.97005 * 119.99993 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47016 * 59.99481 * 9 7 2 25 25 H 1.09005 * 109.46985 * 299.99933 * 9 7 2 26 26 H 1.08998 * 109.46858 * 60.00069 * 10 9 7 27 27 H 1.08997 * 109.47369 * 300.00313 * 10 9 7 28 28 H 1.08002 * 120.06870 * 0.25971 * 15 14 12 29 29 H 1.07995 * 119.93241 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 8 5.4735 -2.6366 0.0022 12 6 6.0852 -3.8370 0.0027 13 8 5.4234 -4.8560 0.0035 14 6 7.5583 -3.9142 0.0032 15 6 8.3221 -2.7438 0.0027 16 6 9.6994 -2.8223 0.0038 17 9 10.4394 -1.6920 0.0039 18 6 10.3269 -4.0618 0.0048 19 9 11.6760 -4.1331 0.0063 20 6 9.5746 -5.2249 0.0042 21 6 8.1958 -5.1585 0.0031 22 17 7.2550 -6.6174 0.0030 23 1 -0.4850 0.8401 -0.0004 24 1 3.8744 -0.6799 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1509 -0.8875 27 1 3.6578 -3.1498 0.8924 28 1 7.8351 -1.7798 0.0062 29 1 10.0678 -6.1857 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916596556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:56 Heat of formation + Delta-G solvation = -152.091238 kcal Electronic energy + Delta-G solvation = -19728.799188 eV Core-core repulsion = 15893.454319 eV Total energy + Delta-G solvation = -3835.344869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.99757 -49.05037 -40.55453 -38.92437 -36.80556 -36.26967 -33.39794 -31.98649 -30.93439 -30.60016 -25.82533 -24.45637 -23.64077 -21.38334 -20.71033 -18.83785 -18.21440 -17.70689 -17.17286 -16.88642 -16.64441 -16.17185 -15.98560 -15.44149 -15.13917 -14.76133 -14.29664 -14.02081 -13.96234 -13.71895 -13.12445 -13.04732 -12.50266 -12.15493 -11.65579 -11.62027 -11.54976 -11.37101 -10.76709 -10.49485 -10.01612 -9.93270 -9.80729 -9.70644 -9.40362 -9.16409 -8.66671 -6.16953 -4.18714 -0.15187 0.28061 1.56831 2.10734 2.68680 3.02051 3.16424 3.24655 3.32547 3.35564 3.68712 3.89131 4.27964 4.34501 4.48026 4.75797 5.05282 5.07625 5.16457 5.19402 5.42169 5.84806 5.88940 5.97092 6.36294 6.58320 7.07759 7.14467 7.56521 7.87754 8.34676 8.84487 9.42159 10.95442 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.003935 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.267204 B = 7113.662215 C = 8448.482909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.085 3.915 11 O -0.355 6.355 12 C 0.498 3.502 13 O -0.480 6.480 14 C -0.092 4.092 15 C -0.056 4.056 16 C 0.062 3.938 17 F -0.118 7.118 18 C 0.111 3.889 19 F -0.116 7.116 20 C -0.133 4.133 21 C 0.029 3.971 22 Cl -0.004 7.004 23 H 0.266 0.734 24 H 0.029 0.971 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.175 0.825 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.314 -9.285 0.033 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.012 3.988 11 O -0.272 6.272 12 C 0.340 3.660 13 O -0.368 6.368 14 C -0.095 4.095 15 C -0.075 4.075 16 C 0.041 3.959 17 F -0.096 7.096 18 C 0.090 3.910 19 F -0.094 7.094 20 C -0.152 4.152 21 C 0.001 3.999 22 Cl 0.026 6.974 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.192 0.808 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 21.883 -9.542 0.038 23.873 hybrid contribution 0.570 0.910 -0.021 1.074 sum 22.453 -8.632 0.016 24.055 Atomic orbital electron populations 1.69889 1.06286 1.27259 1.49882 1.24936 0.94772 0.99190 0.94097 0.86756 0.80419 0.83299 0.78747 1.20047 1.21154 1.18755 1.20811 0.88156 0.95078 1.52610 0.90589 1.19642 0.97102 0.89983 0.97964 1.23489 0.71234 1.01860 1.02182 1.86511 1.26959 1.30793 1.82887 1.20489 0.87693 0.83048 0.74758 1.90939 1.66259 1.35648 1.43958 1.18945 0.91997 0.91773 1.06753 1.21472 0.90621 1.00623 0.94822 1.17505 0.89538 0.81491 1.07316 1.91594 1.76176 1.47948 1.93901 1.17668 0.77921 0.92647 1.02761 1.91588 1.27469 1.96971 1.93366 1.20833 0.91547 0.98796 1.04050 1.20750 0.91400 0.88920 0.98786 1.98467 1.71442 1.31849 1.95645 0.92383 0.95312 0.95731 0.91321 0.91286 0.80787 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.96 55.43 0.77 -26.06 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 15 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 15 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 15 7 C -0.53 -14.58 9.66 -34.44 -0.33 -14.91 15 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 15 9 C -0.01 -0.22 4.42 -27.89 -0.12 -0.34 15 10 C 0.08 1.69 5.41 37.16 0.20 1.89 15 11 O -0.35 -6.12 9.47 -40.58 -0.38 -6.50 15 12 C 0.50 7.76 7.88 34.51 0.27 8.03 15 13 O -0.48 -8.42 13.75 -19.27 -0.26 -8.68 15 14 C -0.09 -1.11 5.88 -104.96 -0.62 -1.73 15 15 C -0.06 -0.58 9.59 -39.11 -0.38 -0.96 15 16 C 0.06 0.61 7.29 -39.43 -0.29 0.32 15 17 F -0.12 -1.25 17.17 2.25 0.04 -1.21 15 18 C 0.11 0.99 7.31 -39.23 -0.29 0.71 15 19 F -0.12 -1.07 17.17 2.25 0.04 -1.03 15 20 C -0.13 -1.08 9.79 -39.55 -0.39 -1.47 15 21 C 0.03 0.31 6.35 -39.07 -0.25 0.06 15 22 Cl 0.00 -0.04 26.01 -51.86 -1.35 -1.39 15 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 24 H 0.03 0.66 7.20 -51.93 -0.37 0.28 15 25 H 0.02 0.55 7.57 -51.93 -0.39 0.16 15 26 H 0.07 1.38 8.14 -51.93 -0.42 0.95 15 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 15 28 H 0.17 1.69 7.61 -52.49 -0.40 1.30 15 29 H 0.17 0.92 8.06 -52.49 -0.42 0.50 15 LS Contribution 287.83 15.07 4.34 4.34 Total: -1.00 -29.81 287.83 -5.78 -35.59 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -2.02 Total: -4.83 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.28 Total: -6.45 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.65 Total: -15.19 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.35 Total: -1.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.81 -5.78 -35.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916596556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.501 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds