Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00153 * 2 1 4 4 H 1.48504 * 109.46832 * 270.00110 * 3 2 1 5 5 H 1.48500 * 109.47037 * 29.99986 * 3 2 1 6 6 H 1.48501 * 109.47346 * 150.00015 * 3 2 1 7 7 C 1.37878 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99163 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00491 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47350 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47408 * 179.97438 * 10 9 7 12 12 C 1.34732 * 117.00395 * 180.02562 * 11 10 9 13 13 O 1.21499 * 119.99785 * 359.97438 * 12 11 10 14 14 C 1.47518 * 120.00359 * 180.02562 * 12 11 10 15 15 C 1.39765 * 120.12482 * 359.97438 * 14 12 11 16 16 C 1.37955 * 119.86066 * 179.97438 * 15 14 12 17 17 F 1.35103 * 119.94276 * 180.02562 * 16 15 14 18 18 C 1.38923 * 120.11482 * 0.02562 * 16 15 14 19 19 F 1.35098 * 119.87252 * 180.02562 * 18 16 15 20 20 C 1.38516 * 120.25640 * 0.02562 * 18 16 15 21 21 C 1.38044 * 120.13569 * 359.97438 * 20 18 16 22 22 Cl 1.73601 * 120.05588 * 180.02562 * 21 20 18 23 23 H 0.97005 * 119.99993 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47016 * 59.99481 * 9 7 2 25 25 H 1.09005 * 109.46985 * 299.99933 * 9 7 2 26 26 H 1.08998 * 109.46858 * 60.00069 * 10 9 7 27 27 H 1.08997 * 109.47369 * 300.00313 * 10 9 7 28 28 H 1.08002 * 120.06870 * 0.25971 * 15 14 12 29 29 H 1.07995 * 119.93241 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 8 5.4735 -2.6366 0.0022 12 6 6.0852 -3.8370 0.0027 13 8 5.4234 -4.8560 0.0035 14 6 7.5583 -3.9142 0.0032 15 6 8.3221 -2.7438 0.0027 16 6 9.6994 -2.8223 0.0038 17 9 10.4394 -1.6920 0.0039 18 6 10.3269 -4.0618 0.0048 19 9 11.6760 -4.1331 0.0063 20 6 9.5746 -5.2249 0.0042 21 6 8.1958 -5.1585 0.0031 22 17 7.2550 -6.6174 0.0030 23 1 -0.4850 0.8401 -0.0004 24 1 3.8744 -0.6799 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6585 -3.1509 -0.8875 27 1 3.6578 -3.1498 0.8924 28 1 7.8351 -1.7798 0.0062 29 1 10.0678 -6.1857 0.0045 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916596556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -168.151660 kcal Electronic energy + Delta-G solvation = -19729.495620 eV Core-core repulsion = 15893.454319 eV Total energy + Delta-G solvation = -3836.041302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.031 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.76566 -49.82709 -41.72904 -39.91922 -37.78393 -37.53990 -35.38803 -33.13947 -32.35688 -31.65987 -27.48035 -25.58756 -24.53891 -22.77439 -22.27371 -19.85063 -19.20675 -18.82909 -18.60375 -17.84476 -17.76605 -17.45266 -17.24890 -16.30862 -16.21151 -15.95629 -15.49818 -15.33155 -15.08561 -14.71341 -14.55467 -14.23625 -14.08480 -13.28000 -13.14688 -12.95744 -12.70628 -12.48510 -12.41513 -12.25519 -11.80582 -11.52413 -11.43011 -11.18183 -10.79700 -10.49285 -9.99533 -8.32717 -6.40755 -1.02569 -0.47757 0.72466 1.10202 1.39907 1.41350 1.45529 1.53834 2.03598 2.35628 2.37548 2.89796 3.02475 3.08791 3.37055 3.63393 3.85777 4.14827 4.20826 4.21544 4.29245 4.49318 4.57645 4.66098 5.02085 5.20285 5.31457 5.43927 5.53331 6.17042 6.55910 6.65966 7.24209 8.83160 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.020655 B = 0.003935 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.267204 B = 7113.662215 C = 8448.482909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.541 4.541 8 H 0.036 0.964 9 C -0.005 4.005 10 C 0.096 3.904 11 O -0.352 6.352 12 C 0.498 3.502 13 O -0.504 6.504 14 C -0.107 4.107 15 C -0.048 4.048 16 C 0.062 3.938 17 F -0.121 7.121 18 C 0.124 3.876 19 F -0.113 7.113 20 C -0.113 4.113 21 C 0.029 3.971 22 Cl -0.015 7.015 23 H 0.270 0.730 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.180 0.820 29 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.369 -8.674 0.029 26.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.579 4.579 8 H 0.054 0.946 9 C -0.042 4.042 10 C 0.023 3.977 11 O -0.269 6.269 12 C 0.342 3.658 13 O -0.393 6.393 14 C -0.109 4.109 15 C -0.067 4.067 16 C 0.042 3.958 17 F -0.100 7.100 18 C 0.103 3.897 19 F -0.091 7.091 20 C -0.132 4.132 21 C 0.001 3.999 22 Cl 0.015 6.985 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.197 0.803 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 24.969 -8.951 0.033 26.525 hybrid contribution -0.319 0.609 -0.021 0.688 sum 24.650 -8.342 0.011 26.023 Atomic orbital electron populations 1.70043 1.08361 1.28550 1.51466 1.25957 0.95654 1.03601 0.93549 0.85619 0.79652 0.77710 0.79477 1.18892 1.20927 1.16403 1.21112 0.90787 0.93746 1.52213 0.94576 1.19479 0.94050 0.92007 0.98663 1.23017 0.73143 0.99897 1.01612 1.86478 1.25012 1.31998 1.83383 1.21047 0.89065 0.82010 0.73663 1.90933 1.67114 1.36095 1.45180 1.18702 0.89630 0.93091 1.09470 1.21415 0.90799 1.00238 0.94257 1.17484 0.89254 0.81690 1.07388 1.91592 1.76156 1.48268 1.93944 1.17669 0.77963 0.92458 1.01628 1.91607 1.27357 1.96937 1.93186 1.21019 0.90280 0.99878 1.02000 1.20813 0.92135 0.87922 0.99053 1.98469 1.71964 1.32393 1.95713 0.92143 0.94450 0.94556 0.91990 0.91987 0.80253 0.78658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.96 21.45 0.30 -57.66 15 2 C 0.01 0.59 5.47 84.66 0.46 1.05 15 3 Si 0.95 42.35 27.47 68.60 1.88 44.23 15 4 H -0.26 -11.23 7.11 99.48 0.71 -10.53 15 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 6 H -0.24 -9.77 6.54 99.48 0.65 -9.12 15 7 C -0.54 -30.41 9.66 25.60 0.25 -30.16 15 8 H 0.04 2.24 7.99 -2.91 -0.02 2.22 15 9 C 0.00 -0.21 4.42 29.85 0.13 -0.07 15 10 C 0.10 3.85 5.41 71.98 0.39 4.24 15 11 O -0.35 -11.79 9.47 -56.42 -0.53 -12.32 15 12 C 0.50 15.15 7.88 70.27 0.55 15.70 15 13 O -0.50 -17.63 13.75 19.84 0.27 -17.36 15 14 C -0.11 -2.39 5.88 -20.08 -0.12 -2.51 15 15 C -0.05 -0.89 9.59 22.57 0.22 -0.67 15 16 C 0.06 1.05 7.29 22.37 0.16 1.22 15 17 F -0.12 -2.26 17.17 44.97 0.77 -1.49 15 18 C 0.12 1.82 7.31 22.50 0.16 1.98 15 19 F -0.11 -1.70 17.17 44.97 0.77 -0.93 15 20 C -0.11 -1.47 9.79 22.29 0.22 -1.25 15 21 C 0.03 0.55 6.35 22.60 0.14 0.69 15 22 Cl -0.02 -0.33 26.01 -2.72 -0.07 -0.40 15 23 H 0.27 15.35 8.31 -92.70 -0.77 14.58 15 24 H 0.04 1.63 7.20 -2.39 -0.02 1.61 15 25 H 0.04 1.56 7.57 -2.38 -0.02 1.54 15 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 28 H 0.18 3.11 7.61 -2.91 -0.02 3.08 15 29 H 0.20 1.36 8.06 -2.91 -0.02 1.34 15 Total: -1.00 -64.80 287.83 7.12 -57.68 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: 1.15 Total: -1.95 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 2.57 Total: -9.79 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.30 Total: -57.66 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.26 Total: -29.68 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 1.54 Total: -2.42 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.07 Total: -0.40 kcal Total: -64.80 7.12 -57.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916596556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.476 kcal (2) G-P(sol) polarization free energy of solvation -64.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds