Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 C 1.50706 * 109.47457 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99998 * 269.72680 * 4 3 2 6 6 C 1.38230 * 119.99826 * 179.76169 * 5 4 3 7 7 C 1.38236 * 120.00376 * 0.48962 * 6 5 4 8 8 C 1.50690 * 120.00382 * 179.76850 * 7 6 5 9 9 N 1.46901 * 109.47195 * 277.67890 * 8 7 6 10 10 C 1.46901 * 111.00535 * 169.19202 * 9 8 7 11 11 C 1.50698 * 109.47320 * 195.83399 * 10 9 8 12 12 H 1.07999 * 120.00090 * 5.03475 * 11 10 9 13 13 C 1.37876 * 119.99947 * 185.04308 * 11 10 9 14 14 N 1.31514 * 119.99871 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47003 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47131 * 119.99400 * 15 13 11 18 18 H 1.48501 * 109.47014 * 239.99723 * 15 13 11 19 19 C 1.46904 * 110.99978 * 293.14851 * 9 8 7 20 20 C 1.52995 * 109.47395 * 87.94880 * 19 9 8 21 21 C 1.53004 * 109.47382 * 65.92023 * 20 19 9 22 22 C 1.52998 * 109.47429 * 185.92032 * 20 19 9 23 23 C 1.38248 * 119.99437 * 359.78481 * 7 6 5 24 24 C 1.38227 * 120.00185 * 359.95877 * 23 7 6 25 25 H 1.09003 * 109.47244 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47506 * 300.00200 * 1 2 3 28 28 H 1.09004 * 109.47327 * 240.00155 * 2 1 3 29 29 H 1.09001 * 109.47470 * 119.99510 * 2 1 3 30 30 H 1.09001 * 109.47551 * 59.99574 * 3 2 1 31 31 H 1.09003 * 109.47045 * 300.00120 * 3 2 1 32 32 H 1.08004 * 119.99843 * 359.97438 * 5 4 3 33 33 H 1.08000 * 119.99819 * 180.25042 * 6 5 4 34 34 H 1.08995 * 109.47454 * 37.67542 * 8 7 6 35 35 H 1.09004 * 109.47300 * 157.68588 * 8 7 6 36 36 H 1.09004 * 109.46460 * 315.83160 * 10 9 8 37 37 H 1.08997 * 109.46876 * 75.82673 * 10 9 8 38 38 H 0.97006 * 119.99637 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47319 * 207.94765 * 19 9 8 40 40 H 1.08997 * 109.46885 * 327.94939 * 19 9 8 41 41 H 1.09002 * 109.47322 * 305.92374 * 20 19 9 42 42 H 1.08996 * 109.47472 * 184.84657 * 21 20 19 43 43 H 1.09003 * 109.46839 * 304.84795 * 21 20 19 44 44 H 1.08998 * 109.46886 * 64.84053 * 21 20 19 45 45 H 1.09001 * 109.47247 * 59.99473 * 22 20 19 46 46 H 1.09001 * 109.47240 * 179.97438 * 22 20 19 47 47 H 1.09002 * 109.47148 * 300.00449 * 22 20 19 48 48 H 1.07999 * 119.99385 * 179.97438 * 23 7 6 49 49 H 1.07996 * 120.00325 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2377 1.4485 1.1980 6 6 5.6200 1.4436 1.1986 7 6 6.3117 1.4430 0.0018 8 6 7.8186 1.4429 0.0024 9 7 8.3083 2.8156 0.1870 10 6 9.7537 2.8283 0.4488 11 6 10.1510 4.1695 1.0094 12 1 9.3943 4.9070 1.2328 13 6 11.4805 4.4551 1.2370 14 7 12.4019 3.5569 0.9653 15 14 11.9730 6.1179 1.9312 16 1 10.7578 6.9434 2.1482 17 1 12.6784 5.9254 3.2237 18 1 12.8744 6.8070 0.9731 19 6 7.9760 3.6535 -0.9729 20 6 6.5878 4.2666 -0.7783 21 6 6.6207 5.2393 0.4023 22 6 6.1797 5.0182 -2.0469 23 6 5.6209 1.4428 -1.1957 24 6 4.2387 1.4424 -1.1963 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.6972 1.4535 2.1331 33 1 6.1595 1.4442 2.1342 34 1 8.1816 0.8152 0.8162 35 1 8.1824 1.0523 -0.9480 36 1 9.9995 2.0467 1.1678 37 1 10.2930 2.6490 -0.4813 38 1 13.3373 3.7578 1.1258 39 1 8.7144 4.4495 -1.0696 40 1 7.9800 3.0426 -1.8755 41 1 5.8660 3.4751 -0.5768 42 1 5.6143 5.6106 0.5954 43 1 6.9939 4.7239 1.2874 44 1 7.2776 6.0762 0.1654 45 1 6.1563 4.3253 -2.8881 46 1 5.1905 5.4546 -1.9084 47 1 6.9016 5.8097 -2.2484 48 1 6.1614 1.4428 -2.1308 49 1 3.6990 1.4426 -2.1318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116114701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -3.018515 kcal Electronic energy + Delta-G solvation = -23718.173017 eV Core-core repulsion = 20643.863832 eV Total energy + Delta-G solvation = -3074.309186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.64487 -37.27758 -35.08457 -33.95734 -32.57063 -31.14307 -30.67148 -27.91246 -26.61540 -26.51912 -25.23241 -23.41889 -22.43171 -21.76183 -20.74251 -20.11593 -19.29907 -16.43594 -15.85722 -15.73157 -15.12950 -14.92381 -14.60046 -14.32723 -14.08171 -13.78906 -13.55229 -13.29889 -13.15438 -13.14142 -12.48503 -12.35101 -12.16099 -12.09783 -11.79141 -11.65968 -11.45595 -11.39276 -11.21160 -11.01299 -10.92205 -10.80695 -10.69126 -10.57947 -10.47926 -10.22281 -10.03492 -9.77253 -9.69482 -9.19691 -8.60455 -8.41700 -8.11245 -7.19499 -6.00033 -4.00611 1.59146 1.68367 3.32013 3.39736 3.45004 3.97357 4.45698 4.72356 4.78138 4.94914 5.01560 5.12033 5.23880 5.27414 5.34938 5.36702 5.37796 5.54576 5.59501 5.60676 5.66649 5.72905 5.77126 5.81831 5.87951 5.96778 6.04592 6.05899 6.12234 6.16493 6.20727 6.35037 6.36314 6.37933 6.42325 6.57293 6.64364 6.69051 6.73873 6.81867 7.00226 7.07053 7.14193 7.27442 7.31248 7.39216 7.88246 8.14007 8.24590 8.58440 9.09480 9.63717 11.10491 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025812 B = 0.003605 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.519656 B = 7765.802898 C = 8038.124847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.077 4.077 4 C -0.094 4.094 5 C -0.119 4.119 6 C -0.096 4.096 7 C -0.058 4.058 8 C 0.088 3.912 9 N -0.526 5.526 10 C 0.192 3.808 11 C -0.499 4.499 12 H 0.067 0.933 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.070 3.930 20 C -0.102 4.102 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.109 4.109 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.025 0.975 37 H -0.006 1.006 38 H 0.259 0.741 39 H 0.077 0.923 40 H 0.018 0.982 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.114 0.886 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 -5.136 -3.821 20.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.115 4.115 4 C -0.094 4.094 5 C -0.137 4.137 6 C -0.114 4.114 7 C -0.059 4.059 8 C -0.040 4.040 9 N -0.250 5.250 10 C 0.068 3.932 11 C -0.538 4.538 12 H 0.085 0.915 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.212 1.212 19 C -0.059 4.059 20 C -0.120 4.120 21 C -0.188 4.188 22 C -0.201 4.201 23 C -0.128 4.128 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.012 0.988 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.036 0.964 41 H 0.100 0.900 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.133 0.867 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.770 -4.962 -3.396 20.664 hybrid contribution 0.947 0.592 -0.387 1.182 sum -18.823 -4.370 -3.783 19.691 Atomic orbital electron populations 1.21795 0.95979 1.01499 1.01739 1.21510 0.95317 0.96442 1.02341 1.20580 0.91449 0.96959 1.02473 1.19736 0.95087 1.01318 0.93295 1.20946 0.94213 1.01476 0.97113 1.21001 0.93581 0.98772 0.98059 1.19914 0.95991 0.97156 0.92801 1.21115 0.89968 0.92851 1.00063 1.62073 1.18914 1.06414 1.37613 1.19773 0.80082 0.97934 0.95457 1.21234 0.91765 0.99727 1.41090 0.91492 1.24992 0.96618 0.97080 0.96051 1.69974 1.00697 1.34189 1.49203 0.86495 0.78521 0.84141 0.78614 1.19603 1.21110 1.21226 1.22050 0.96503 0.96994 0.90319 1.21407 0.97964 0.98295 0.94371 1.21651 0.98996 0.98659 0.99532 1.21801 1.00371 0.99997 0.97920 1.20979 0.93978 1.00235 0.97614 1.20855 0.93982 1.01993 0.97124 0.92815 0.92851 0.92766 0.91970 0.91902 0.91353 0.91422 0.86729 0.85978 0.90604 0.95253 0.95713 0.98798 0.93093 0.90422 0.96414 0.90029 0.95027 0.90966 0.93717 0.93677 0.93535 0.93146 0.86748 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 3 C -0.08 -0.73 5.35 -27.88 -0.15 -0.88 16 4 C -0.09 -1.13 5.13 -104.62 -0.54 -1.66 16 5 C -0.12 -1.53 9.70 -39.59 -0.38 -1.92 16 6 C -0.10 -1.41 9.68 -39.59 -0.38 -1.79 16 7 C -0.06 -0.90 3.46 -104.62 -0.36 -1.26 16 8 C 0.09 1.58 5.02 -4.98 -0.02 1.55 16 9 N -0.53 -11.00 3.79 -237.52 -0.90 -11.90 16 10 C 0.19 4.91 4.67 -4.98 -0.02 4.88 16 11 C -0.50 -13.78 8.32 -34.44 -0.29 -14.06 16 12 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 13 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 14 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 C 0.07 1.36 3.93 -3.82 -0.02 1.34 16 20 C -0.10 -1.72 2.62 -90.62 -0.24 -1.95 16 21 C -0.13 -2.34 9.14 37.16 0.34 -2.00 16 22 C -0.14 -2.09 9.19 37.16 0.34 -1.75 16 23 C -0.11 -1.53 7.31 -39.58 -0.29 -1.82 16 24 C -0.12 -1.51 9.61 -39.58 -0.38 -1.89 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.08 1.36 7.83 -51.93 -0.41 0.95 16 35 H 0.03 0.52 7.76 -51.93 -0.40 0.12 16 36 H 0.02 0.67 7.80 -51.93 -0.41 0.27 16 37 H -0.01 -0.16 8.05 -51.93 -0.42 -0.58 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.08 1.72 7.05 -51.93 -0.37 1.35 16 40 H 0.02 0.33 7.64 -51.93 -0.40 -0.07 16 41 H 0.08 1.36 3.85 -51.93 -0.20 1.16 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.45 7.66 -51.93 -0.40 1.05 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.11 1.54 8.05 -52.49 -0.42 1.12 16 49 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -28.76 385.93 -10.94 -39.71 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -9.30 Total: -0.70 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -2.28 Total: -23.66 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.16 Total: -37.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.76 -10.94 -39.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116114701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.689 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds