Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47151 * 2 1 4 4 C 1.50706 * 109.47457 * 179.97438 * 3 2 1 5 5 C 1.38232 * 119.99998 * 269.72680 * 4 3 2 6 6 C 1.38230 * 119.99826 * 179.76169 * 5 4 3 7 7 C 1.38236 * 120.00376 * 0.48962 * 6 5 4 8 8 C 1.50690 * 120.00382 * 179.76850 * 7 6 5 9 9 N 1.46901 * 109.47195 * 277.67890 * 8 7 6 10 10 C 1.46901 * 111.00535 * 169.19202 * 9 8 7 11 11 C 1.50698 * 109.47320 * 195.83399 * 10 9 8 12 12 H 1.07999 * 120.00090 * 5.03475 * 11 10 9 13 13 C 1.37876 * 119.99947 * 185.04308 * 11 10 9 14 14 N 1.31514 * 119.99871 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47003 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47131 * 119.99400 * 15 13 11 18 18 H 1.48501 * 109.47014 * 239.99723 * 15 13 11 19 19 C 1.46904 * 110.99978 * 293.14851 * 9 8 7 20 20 C 1.52995 * 109.47395 * 87.94880 * 19 9 8 21 21 C 1.53004 * 109.47382 * 65.92023 * 20 19 9 22 22 C 1.52998 * 109.47429 * 185.92032 * 20 19 9 23 23 C 1.38248 * 119.99437 * 359.78481 * 7 6 5 24 24 C 1.38227 * 120.00185 * 359.95877 * 23 7 6 25 25 H 1.09003 * 109.47244 * 60.00002 * 1 2 3 26 26 H 1.09003 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47506 * 300.00200 * 1 2 3 28 28 H 1.09004 * 109.47327 * 240.00155 * 2 1 3 29 29 H 1.09001 * 109.47470 * 119.99510 * 2 1 3 30 30 H 1.09001 * 109.47551 * 59.99574 * 3 2 1 31 31 H 1.09003 * 109.47045 * 300.00120 * 3 2 1 32 32 H 1.08004 * 119.99843 * 359.97438 * 5 4 3 33 33 H 1.08000 * 119.99819 * 180.25042 * 6 5 4 34 34 H 1.08995 * 109.47454 * 37.67542 * 8 7 6 35 35 H 1.09004 * 109.47300 * 157.68588 * 8 7 6 36 36 H 1.09004 * 109.46460 * 315.83160 * 10 9 8 37 37 H 1.08997 * 109.46876 * 75.82673 * 10 9 8 38 38 H 0.97006 * 119.99637 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.47319 * 207.94765 * 19 9 8 40 40 H 1.08997 * 109.46885 * 327.94939 * 19 9 8 41 41 H 1.09002 * 109.47322 * 305.92374 * 20 19 9 42 42 H 1.08996 * 109.47472 * 184.84657 * 21 20 19 43 43 H 1.09003 * 109.46839 * 304.84795 * 21 20 19 44 44 H 1.08998 * 109.46886 * 64.84053 * 21 20 19 45 45 H 1.09001 * 109.47247 * 59.99473 * 22 20 19 46 46 H 1.09001 * 109.47240 * 179.97438 * 22 20 19 47 47 H 1.09002 * 109.47148 * 300.00449 * 22 20 19 48 48 H 1.07999 * 119.99385 * 179.97438 * 23 7 6 49 49 H 1.07996 * 120.00325 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2377 1.4485 1.1980 6 6 5.6200 1.4436 1.1986 7 6 6.3117 1.4430 0.0018 8 6 7.8186 1.4429 0.0024 9 7 8.3083 2.8156 0.1870 10 6 9.7537 2.8283 0.4488 11 6 10.1510 4.1695 1.0094 12 1 9.3943 4.9070 1.2328 13 6 11.4805 4.4551 1.2370 14 7 12.4019 3.5569 0.9653 15 14 11.9730 6.1179 1.9312 16 1 10.7578 6.9434 2.1482 17 1 12.6784 5.9254 3.2237 18 1 12.8744 6.8070 0.9731 19 6 7.9760 3.6535 -0.9729 20 6 6.5878 4.2666 -0.7783 21 6 6.6207 5.2393 0.4023 22 6 6.1797 5.0182 -2.0469 23 6 5.6209 1.4428 -1.1957 24 6 4.2387 1.4424 -1.1963 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.6972 1.4535 2.1331 33 1 6.1595 1.4442 2.1342 34 1 8.1816 0.8152 0.8162 35 1 8.1824 1.0523 -0.9480 36 1 9.9995 2.0467 1.1678 37 1 10.2930 2.6490 -0.4813 38 1 13.3373 3.7578 1.1258 39 1 8.7144 4.4495 -1.0696 40 1 7.9800 3.0426 -1.8755 41 1 5.8660 3.4751 -0.5768 42 1 5.6143 5.6106 0.5954 43 1 6.9939 4.7239 1.2874 44 1 7.2776 6.0762 0.1654 45 1 6.1563 4.3253 -2.8881 46 1 5.1905 5.4546 -1.9084 47 1 6.9016 5.8097 -2.2484 48 1 6.1614 1.4428 -2.1308 49 1 3.6990 1.4426 -2.1318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116114701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -15.659819 kcal Electronic energy + Delta-G solvation = -23718.721186 eV Core-core repulsion = 20643.863832 eV Total energy + Delta-G solvation = -3074.857354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80421 -38.70406 -35.97044 -35.55986 -34.45215 -32.32434 -31.72447 -29.42950 -28.13852 -27.84157 -26.58615 -24.97566 -23.50315 -22.83837 -22.12630 -21.23718 -20.76190 -18.48918 -17.12201 -16.86121 -16.61666 -16.16862 -16.02706 -15.77170 -15.21783 -15.04601 -14.83444 -14.43935 -14.27469 -14.19867 -14.11508 -13.77252 -13.42193 -13.32061 -13.00799 -12.94695 -12.84130 -12.74566 -12.69400 -12.43425 -12.35394 -12.03315 -11.90894 -11.83342 -11.69690 -11.52649 -11.42147 -11.40456 -11.24797 -11.09142 -10.60542 -9.66335 -9.23960 -8.95056 -8.18222 -6.27209 0.51368 0.62684 1.38936 1.39798 1.53359 2.40177 2.87711 3.13666 3.46024 3.87685 3.96323 4.07078 4.11983 4.18417 4.23153 4.28415 4.33813 4.41441 4.50066 4.61707 4.64711 4.67850 4.74662 4.77560 4.88760 4.92347 4.95468 4.96317 5.00468 5.08258 5.12630 5.15372 5.18130 5.23043 5.26582 5.27307 5.34513 5.37037 5.38997 5.52058 5.61769 5.63496 5.70569 5.73116 5.83363 5.87799 6.10715 6.22309 6.41386 6.66881 6.90641 7.42143 8.92260 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.025812 B = 0.003605 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.519656 B = 7765.802898 C = 8038.124847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.075 4.075 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.109 4.109 7 C -0.075 4.075 8 C 0.090 3.910 9 N -0.527 5.527 10 C 0.208 3.792 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.963 3.037 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.075 3.925 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.113 4.113 24 C -0.119 4.119 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.000 1.000 37 H -0.037 1.037 38 H 0.263 0.737 39 H 0.045 0.955 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.033 0.967 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.118 0.882 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 -4.230 -4.359 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.112 4.112 4 C -0.086 4.086 5 C -0.139 4.139 6 C -0.127 4.127 7 C -0.076 4.076 8 C -0.037 4.037 9 N -0.251 5.251 10 C 0.082 3.918 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.578 5.578 15 Si 0.788 3.212 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.053 4.053 20 C -0.112 4.112 21 C -0.184 4.184 22 C -0.196 4.196 23 C -0.131 4.131 24 C -0.136 4.136 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.151 0.849 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.018 0.982 37 H -0.020 1.020 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.063 0.937 48 H 0.136 0.864 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.863 -4.060 -3.939 23.553 hybrid contribution 1.829 0.228 -0.230 1.857 sum -21.035 -3.833 -4.169 21.784 Atomic orbital electron populations 1.21774 0.94794 1.02001 1.02228 1.21479 0.96324 0.95657 1.01950 1.20632 0.89310 0.97762 1.03501 1.20079 0.96660 0.99231 0.92663 1.21151 0.93313 1.00887 0.98545 1.21012 0.94689 0.99668 0.97355 1.19641 0.93985 0.99885 0.94056 1.21089 0.92290 0.90857 0.99506 1.62038 1.15603 1.08612 1.38840 1.19416 0.82857 0.96423 0.93104 1.21478 0.92009 1.00318 1.40948 0.91768 1.25870 0.96610 1.00921 0.96330 1.70098 1.01105 1.36293 1.50286 0.85418 0.78304 0.79485 0.77961 1.18797 1.20463 1.20562 1.22028 0.97436 0.95885 0.89972 1.21359 0.96051 0.98402 0.95430 1.21586 0.99930 0.98158 0.98692 1.21755 1.01203 0.99863 0.96776 1.21038 0.94904 1.00270 0.96926 1.21129 0.93221 1.00835 0.98453 0.92218 0.92420 0.92395 0.92233 0.92511 0.90580 0.90191 0.84937 0.87105 0.91649 0.95386 0.98194 1.01955 0.92858 0.93607 0.95749 0.89225 0.92627 0.93791 0.94800 0.92416 0.91501 0.93655 0.86447 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 3 C -0.07 -1.13 5.35 29.85 0.16 -0.97 16 4 C -0.09 -1.80 5.13 -19.86 -0.10 -1.90 16 5 C -0.12 -2.88 9.70 22.27 0.22 -2.66 16 6 C -0.11 -3.18 9.68 22.27 0.22 -2.96 16 7 C -0.08 -2.33 3.46 -19.87 -0.07 -2.40 16 8 C 0.09 3.39 5.02 85.55 0.43 3.82 16 9 N -0.53 -23.08 3.79 -905.38 -3.43 -26.51 16 10 C 0.21 11.27 4.67 85.56 0.40 11.67 16 11 C -0.51 -29.16 8.32 25.60 0.21 -28.95 16 12 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 13 C 0.00 0.00 5.46 84.65 0.46 0.47 16 14 N -0.94 -57.20 13.29 21.45 0.28 -56.92 16 15 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 16 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C 0.07 2.99 3.93 86.30 0.34 3.32 16 20 C -0.09 -3.07 2.62 -10.79 -0.03 -3.10 16 21 C -0.13 -4.42 9.14 71.98 0.66 -3.76 16 22 C -0.14 -3.70 9.19 71.98 0.66 -3.04 16 23 C -0.11 -2.98 7.31 22.27 0.16 -2.82 16 24 C -0.12 -2.58 9.61 22.27 0.21 -2.37 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.07 8.08 -2.39 -0.02 1.06 16 31 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.07 2.52 7.83 -2.39 -0.02 2.50 16 35 H 0.03 1.04 7.76 -2.38 -0.02 1.02 16 36 H 0.00 0.00 7.80 -2.39 -0.02 -0.02 16 37 H -0.04 -2.21 8.05 -2.39 -0.02 -2.23 16 38 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 39 H 0.05 2.10 7.05 -2.38 -0.02 2.08 16 40 H 0.02 0.92 7.64 -2.39 -0.02 0.90 16 41 H 0.09 2.84 3.85 -2.39 -0.01 2.83 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.77 7.66 -2.39 -0.02 1.75 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.12 2.99 8.05 -2.91 -0.02 2.97 16 49 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -63.68 385.93 4.57 -59.12 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.86 Total: 15.12 kcal Atomic # 6 Polarization: -42.86 SS G_CDS: 4.83 Total: -38.04 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.15 Total: -83.43 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -63.68 4.57 -59.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116114701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.456 kcal (2) G-P(sol) polarization free energy of solvation -63.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds