Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.55129 * 2 1 4 4 O 1.45191 * 109.47174 * 34.41692 * 3 2 1 5 5 C 1.34232 * 117.00242 * 180.02562 * 4 3 2 6 6 O 1.20822 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00051 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.46973 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.52999 * 117.50110 * 214.32486 * 2 1 3 18 18 C 1.53001 * 117.49903 * 145.66615 * 2 1 3 19 19 H 1.09003 * 117.50364 * 215.00382 * 18 2 1 20 20 Br 1.96598 * 117.49681 * 0.02931 * 18 2 1 21 21 H 1.09000 * 109.46390 * 85.58355 * 1 2 3 22 22 H 1.08993 * 109.47026 * 205.58009 * 1 2 3 23 23 H 1.08997 * 109.47051 * 325.58565 * 1 2 3 24 24 H 1.09000 * 109.46868 * 274.41147 * 3 2 1 25 25 H 1.09006 * 109.46936 * 154.41410 * 3 2 1 26 26 H 1.09000 * 109.47333 * 60.00278 * 7 5 4 27 27 H 1.09002 * 109.47152 * 299.99750 * 7 5 4 28 28 H 1.09001 * 109.47671 * 60.00215 * 8 7 5 29 29 H 1.09006 * 109.47297 * 299.99934 * 8 7 5 30 30 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 31 31 H 1.09004 * 117.49589 * 359.97438 * 17 2 1 32 32 H 1.09007 * 117.50149 * 144.97128 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3799 2.3041 0.7737 5 6 1.8226 3.5674 0.8727 6 8 2.8532 3.8905 0.3311 7 6 1.0343 4.5827 1.6593 8 6 1.7523 5.9330 1.6130 9 6 0.9643 6.9482 2.4002 10 1 0.0432 6.6593 2.8846 11 6 1.4192 8.2457 2.5019 12 7 2.5405 8.5977 1.9116 13 14 0.4421 9.5042 3.4770 14 1 1.1396 10.8145 3.4332 15 1 -0.9132 9.6445 2.8863 16 1 0.3233 9.0541 4.8872 17 6 2.2365 -1.1208 -0.7652 18 6 2.2364 -1.1207 0.7655 19 1 3.1713 -0.8746 1.2690 20 35 1.1087 -2.4510 1.6730 21 1 -0.3632 0.0791 -1.0247 22 1 -0.3633 -0.9269 0.4437 23 1 -0.3633 0.8478 0.5808 24 1 2.2753 1.7423 -1.0246 25 1 3.1829 1.3084 0.4438 26 1 0.9471 4.2524 2.6944 27 1 0.0396 4.6856 1.2256 28 1 1.8391 6.2632 0.5779 29 1 2.7473 5.8305 2.0464 30 1 3.0477 7.9442 1.4050 31 1 1.6112 -1.8584 -1.2684 32 1 3.1712 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123039871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -81.049788 kcal Electronic energy + Delta-G solvation = -15289.621639 eV Core-core repulsion = 12489.850282 eV Total energy + Delta-G solvation = -2799.771357 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.22547 -38.53304 -36.01450 -33.93185 -31.15748 -30.57487 -28.89756 -27.46493 -25.23098 -22.46519 -22.34113 -20.08010 -19.47781 -17.49081 -16.64563 -16.36460 -16.33569 -14.96256 -14.67849 -14.02594 -13.72551 -13.42201 -13.07206 -12.83732 -12.50212 -12.13325 -11.91709 -11.65322 -11.48582 -11.45729 -10.87202 -10.72942 -10.44280 -10.22030 -10.21177 -10.07752 -10.02084 -9.86390 -9.74868 -8.63752 -8.35223 -6.38583 -4.09719 1.28701 2.67174 2.78359 3.13057 3.43725 3.45698 3.64540 4.06474 4.26028 4.37494 4.54411 4.62000 5.09301 5.18227 5.21983 5.31294 5.39368 5.44560 5.58039 5.66739 5.76124 5.97852 6.03138 6.14977 6.48698 6.78113 7.37091 7.41820 8.06267 8.23528 8.42354 8.83888 9.63888 11.02381 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.039263 B = 0.002959 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.972250 B = 9460.044610 C = 9858.999602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C 0.100 3.900 4 O -0.358 6.358 5 C 0.457 3.543 6 O -0.509 6.509 7 C -0.096 4.096 8 C 0.020 3.980 9 C -0.610 4.610 10 H 0.052 0.948 11 C 0.017 3.983 12 N -0.909 5.909 13 Si 1.071 2.929 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.287 1.287 17 C -0.143 4.143 18 C -0.119 4.119 19 H 0.139 0.861 20 Br -0.114 7.114 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.272 0.728 31 H 0.114 0.886 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -24.820 -3.804 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C 0.026 3.974 4 O -0.276 6.276 5 C 0.301 3.699 6 O -0.396 6.396 7 C -0.134 4.134 8 C -0.017 4.017 9 C -0.648 4.648 10 H 0.071 0.929 11 C -0.188 4.188 12 N -0.544 5.544 13 Si 0.899 3.101 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.214 1.214 17 C -0.181 4.181 18 C -0.215 4.215 19 H 0.156 0.844 20 Br -0.032 7.032 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.286 -23.629 -3.179 24.067 hybrid contribution 0.536 -1.508 -0.727 1.758 sum -2.750 -25.136 -3.906 25.586 Atomic orbital electron populations 1.21543 0.89945 1.04299 1.02865 1.21713 0.97132 0.89095 1.02171 1.22335 0.93089 0.85664 0.96325 1.86550 1.52207 1.21407 1.67389 1.24785 0.85031 0.81291 0.78750 1.90628 1.24648 1.79651 1.44680 1.21613 0.99665 0.93119 0.98977 1.19139 0.95865 0.88936 0.97759 1.21977 1.10248 0.96592 1.36005 0.92921 1.25882 0.97161 0.98332 0.97418 1.70754 1.14177 1.38473 1.31042 0.83514 0.75054 0.75849 0.75659 1.20738 1.21357 1.21365 1.23495 1.03341 1.00038 0.91277 1.25994 1.01164 0.98531 0.95848 0.84360 1.97307 1.69748 1.56238 1.79930 0.91640 0.90897 0.89998 0.90273 0.91065 0.88714 0.88713 0.96496 0.96516 0.91792 0.86814 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.63 37.16 0.36 -0.94 16 2 C -0.10 -0.99 2.59 -154.51 -0.40 -1.39 16 3 C 0.10 1.26 5.59 37.16 0.21 1.47 16 4 O -0.36 -5.63 8.79 -39.26 -0.35 -5.97 16 5 C 0.46 8.78 7.96 36.00 0.29 9.07 16 6 O -0.51 -11.24 15.73 -18.75 -0.29 -11.54 16 7 C -0.10 -1.96 5.75 -27.89 -0.16 -2.12 16 8 C 0.02 0.53 3.57 -27.88 -0.10 0.43 16 9 C -0.61 -17.25 9.11 -34.44 -0.31 -17.56 16 10 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 11 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 12 N -0.91 -28.27 13.65 55.43 0.76 -27.52 16 13 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 17 C -0.14 -1.07 9.79 -26.70 -0.26 -1.33 16 18 C -0.12 -1.08 6.63 -26.69 -0.18 -1.25 16 19 H 0.14 1.17 8.05 -51.93 -0.42 0.76 16 20 Br -0.11 -1.09 31.94 -68.01 -2.17 -3.27 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.69 5.79 -51.93 -0.30 0.39 16 23 H 0.08 0.94 6.87 -51.93 -0.36 0.59 16 24 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 25 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 26 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 29 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 30 H 0.27 8.53 7.22 -40.82 -0.29 8.23 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 295.75 15.07 4.46 4.46 Total: -1.00 -31.98 295.75 -7.68 -39.66 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.35 Total: -2.58 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.66 Total: -13.24 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.76 Total: -27.52 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.64 Total: -17.51 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 35 Polarization: -1.09 SS G_CDS: -2.17 Total: -3.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.98 -7.68 -39.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123039871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.388 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds