Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 115.55129 * 2 1 4 4 O 1.45191 * 109.47174 * 34.41692 * 3 2 1 5 5 C 1.34232 * 117.00242 * 180.02562 * 4 3 2 6 6 O 1.20822 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00051 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.46973 * 180.02562 * 7 5 4 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.52999 * 117.50110 * 214.32486 * 2 1 3 18 18 C 1.53001 * 117.49903 * 145.66615 * 2 1 3 19 19 H 1.09003 * 117.50364 * 215.00382 * 18 2 1 20 20 Br 1.96598 * 117.49681 * 0.02931 * 18 2 1 21 21 H 1.09000 * 109.46390 * 85.58355 * 1 2 3 22 22 H 1.08993 * 109.47026 * 205.58009 * 1 2 3 23 23 H 1.08997 * 109.47051 * 325.58565 * 1 2 3 24 24 H 1.09000 * 109.46868 * 274.41147 * 3 2 1 25 25 H 1.09006 * 109.46936 * 154.41410 * 3 2 1 26 26 H 1.09000 * 109.47333 * 60.00278 * 7 5 4 27 27 H 1.09002 * 109.47152 * 299.99750 * 7 5 4 28 28 H 1.09001 * 109.47671 * 60.00215 * 8 7 5 29 29 H 1.09006 * 109.47297 * 299.99934 * 8 7 5 30 30 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 31 31 H 1.09004 * 117.49589 * 359.97438 * 17 2 1 32 32 H 1.09007 * 117.50149 * 144.97128 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3799 2.3041 0.7737 5 6 1.8226 3.5674 0.8727 6 8 2.8532 3.8905 0.3311 7 6 1.0343 4.5827 1.6593 8 6 1.7523 5.9330 1.6130 9 6 0.9643 6.9482 2.4002 10 1 0.0432 6.6593 2.8846 11 6 1.4192 8.2457 2.5019 12 7 2.5405 8.5977 1.9116 13 14 0.4421 9.5042 3.4770 14 1 1.1396 10.8145 3.4332 15 1 -0.9132 9.6445 2.8863 16 1 0.3233 9.0541 4.8872 17 6 2.2365 -1.1208 -0.7652 18 6 2.2364 -1.1207 0.7655 19 1 3.1713 -0.8746 1.2690 20 35 1.1087 -2.4510 1.6730 21 1 -0.3632 0.0791 -1.0247 22 1 -0.3633 -0.9269 0.4437 23 1 -0.3633 0.8478 0.5808 24 1 2.2753 1.7423 -1.0246 25 1 3.1829 1.3084 0.4438 26 1 0.9471 4.2524 2.6944 27 1 0.0396 4.6856 1.2256 28 1 1.8391 6.2632 0.5779 29 1 2.7473 5.8305 2.0464 30 1 3.0477 7.9442 1.4050 31 1 1.6112 -1.8584 -1.2684 32 1 3.1712 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123039871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -98.759432 kcal Electronic energy + Delta-G solvation = -15290.389587 eV Core-core repulsion = 12489.850282 eV Total energy + Delta-G solvation = -2800.539304 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.64413 -39.44881 -37.39749 -36.01769 -33.08012 -31.37895 -29.70132 -28.65505 -27.08145 -24.31235 -23.11565 -21.68721 -20.32259 -19.26138 -18.34389 -17.74908 -17.63195 -16.20521 -15.75311 -15.61071 -15.15069 -14.79039 -14.47958 -13.95484 -13.84358 -13.61961 -13.55353 -12.69807 -12.62075 -12.43378 -12.26654 -12.14498 -12.10968 -11.87787 -11.85141 -11.59016 -11.23166 -10.79442 -10.70840 -10.55956 -10.50299 -8.70706 -6.43180 0.57630 1.12817 1.53124 1.58343 1.65491 1.84153 2.34205 2.59902 3.15801 3.30719 3.46947 3.58223 3.78781 3.93249 4.20915 4.24109 4.30232 4.32634 4.55056 4.71438 4.78719 4.83608 4.90692 4.97411 5.19097 5.27918 5.28668 5.38859 5.89545 6.16041 6.48942 6.72343 7.41776 8.69790 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.039263 B = 0.002959 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.972250 B = 9460.044610 C = 9858.999602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 C 0.095 3.905 4 O -0.348 6.348 5 C 0.468 3.532 6 O -0.545 6.545 7 C -0.089 4.089 8 C 0.023 3.977 9 C -0.621 4.621 10 H 0.068 0.932 11 C -0.042 4.042 12 N -0.939 5.939 13 Si 1.124 2.876 14 H -0.288 1.288 15 H -0.264 1.264 16 H -0.265 1.265 17 C -0.118 4.118 18 C -0.124 4.124 19 H 0.143 0.857 20 Br -0.121 7.121 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.116 0.884 28 H -0.012 1.012 29 H -0.013 1.013 30 H 0.253 0.747 31 H 0.128 0.872 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -26.099 -3.508 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.115 4.115 3 C 0.021 3.979 4 O -0.265 6.265 5 C 0.313 3.687 6 O -0.435 6.435 7 C -0.126 4.126 8 C -0.015 4.015 9 C -0.658 4.658 10 H 0.087 0.913 11 C -0.239 4.239 12 N -0.576 5.576 13 Si 0.943 3.057 14 H -0.213 1.213 15 H -0.189 1.189 16 H -0.190 1.190 17 C -0.156 4.156 18 C -0.220 4.220 19 H 0.161 0.839 20 Br -0.039 7.039 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.006 0.994 29 H 0.005 0.995 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.681 -24.965 -2.886 25.564 hybrid contribution 0.982 -1.223 -0.858 1.788 sum -3.699 -26.188 -3.744 26.712 Atomic orbital electron populations 1.21518 0.89982 1.03711 1.03282 1.21634 0.97111 0.88054 1.04690 1.22639 0.93169 0.86182 0.95906 1.86514 1.52307 1.20150 1.67508 1.24375 0.84091 0.82293 0.77935 1.90622 1.26121 1.80528 1.46220 1.21365 0.99810 0.90722 1.00737 1.18970 0.94966 0.92124 0.95396 1.22450 1.10715 0.97126 1.35543 0.91328 1.27615 0.97207 1.01384 0.97681 1.70906 1.15736 1.38108 1.32808 0.82872 0.74428 0.72923 0.75427 1.21344 1.18876 1.18957 1.23646 1.03648 0.98009 0.90265 1.26091 1.00908 0.97930 0.97103 0.83921 1.97313 1.69993 1.56327 1.80267 0.90590 0.90414 0.91813 0.90031 0.90889 0.86801 0.86627 0.99384 0.99492 0.93755 0.85410 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.63 71.98 0.69 -1.64 16 2 C -0.11 -2.03 2.59 -52.18 -0.13 -2.17 16 3 C 0.09 2.27 5.59 71.98 0.40 2.67 16 4 O -0.35 -10.59 8.79 -51.43 -0.45 -11.04 16 5 C 0.47 17.85 7.96 71.23 0.57 18.41 16 6 O -0.54 -24.51 15.73 21.98 0.35 -24.16 16 7 C -0.09 -3.57 5.75 29.85 0.17 -3.40 16 8 C 0.02 1.21 3.57 29.85 0.11 1.32 16 9 C -0.62 -35.00 9.11 25.60 0.23 -34.76 16 10 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 11 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 12 N -0.94 -59.83 13.65 21.45 0.29 -59.54 16 13 Si 1.12 49.50 29.90 68.60 2.05 51.55 16 14 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 16 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 17 C -0.12 -1.42 9.79 30.62 0.30 -1.12 16 18 C -0.12 -1.98 6.63 30.62 0.20 -1.78 16 19 H 0.14 2.15 8.05 -2.39 -0.02 2.13 16 20 Br -0.12 -2.11 31.94 -20.37 -0.65 -2.76 16 21 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.08 1.33 5.79 -2.39 -0.01 1.32 16 23 H 0.06 1.39 6.87 -2.39 -0.02 1.37 16 24 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 25 H 0.07 1.73 7.89 -2.38 -0.02 1.71 16 26 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 27 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 28 H -0.01 -0.72 7.97 -2.39 -0.02 -0.74 16 29 H -0.01 -0.78 7.97 -2.38 -0.02 -0.80 16 30 H 0.25 16.65 7.22 -92.71 -0.67 15.98 16 31 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -69.94 295.75 5.80 -64.14 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.21 Total: 6.24 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 3.00 Total: -24.43 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.29 Total: -59.54 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.11 Total: -35.20 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Atomic # 35 Polarization: -2.11 SS G_CDS: -0.65 Total: -2.76 kcal Total: -69.94 5.80 -64.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123039871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.619 kcal (2) G-P(sol) polarization free energy of solvation -69.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds