Wall clock time and date at job start Tue Mar 31 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.54950 * 2 1 4 4 O 1.45199 * 109.47075 * 325.67288 * 3 2 1 5 5 C 1.34230 * 116.99614 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.53003 * 109.47116 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.08006 * 120.00258 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00172 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00174 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99921 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47347 * 89.99468 * 13 11 9 15 15 H 1.48501 * 109.47249 * 209.99861 * 13 11 9 16 16 H 1.48508 * 109.46795 * 329.99871 * 13 11 9 17 17 C 1.52994 * 117.49816 * 145.67339 * 2 1 3 18 18 C 1.52998 * 60.00131 * 107.50697 * 17 2 1 19 19 H 1.08994 * 117.50279 * 252.50710 * 18 17 2 20 20 Br 1.96605 * 117.49618 * 107.48517 * 18 17 2 21 21 H 1.08991 * 109.47219 * 34.41040 * 1 2 3 22 22 H 1.08999 * 109.47158 * 154.41604 * 1 2 3 23 23 H 1.09003 * 109.46878 * 274.41548 * 1 2 3 24 24 H 1.09002 * 109.47153 * 205.67229 * 3 2 1 25 25 H 1.09001 * 109.46832 * 85.67420 * 3 2 1 26 26 H 1.09000 * 109.47303 * 300.00327 * 7 5 4 27 27 H 1.09003 * 109.46535 * 60.00663 * 7 5 4 28 28 H 1.09000 * 109.47151 * 300.00236 * 8 7 5 29 29 H 1.09003 * 109.46860 * 60.00013 * 8 7 5 30 30 H 0.97004 * 120.00463 * 180.02562 * 12 11 9 31 31 H 1.09000 * 117.49792 * 214.99589 * 17 2 1 32 32 H 1.09002 * 117.50456 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3787 2.3046 -0.7720 5 6 1.8214 3.5680 -0.8707 6 8 2.8527 3.8907 -0.3303 7 6 1.0325 4.5836 -1.6564 8 6 1.7511 5.9336 -1.6112 9 6 0.9619 6.9493 -2.3964 10 1 0.0398 6.6609 -2.8791 11 6 1.4165 8.2470 -2.4977 12 7 0.7276 9.1335 -3.1825 13 14 3.0110 8.7460 -1.6622 14 1 4.1459 8.5383 -2.5972 15 1 2.9415 10.1789 -1.2786 16 1 3.2132 7.9173 -0.4466 17 6 2.2365 -1.1207 0.7653 18 6 2.2368 -1.1210 -0.7647 19 1 1.6119 -1.8586 -1.2681 20 35 3.9236 -0.6773 -1.6721 21 1 -0.3633 0.8478 -0.5807 22 1 -0.3633 -0.9269 -0.4438 23 1 -0.3633 0.0791 1.0247 24 1 3.1823 1.3087 -0.4452 25 1 2.2767 1.7416 1.0248 26 1 0.9446 4.2536 -2.6916 27 1 0.0380 4.6862 -1.2221 28 1 1.8393 6.2637 -0.5761 29 1 2.7454 5.8306 -2.0457 30 1 1.0475 10.0464 -3.2541 31 1 3.1714 -0.8747 1.2687 32 1 1.6113 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123039872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:12 Heat of formation + Delta-G solvation = -73.310357 kcal Electronic energy + Delta-G solvation = -15426.584062 eV Core-core repulsion = 12627.148312 eV Total energy + Delta-G solvation = -2799.435750 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.18410 -38.53092 -35.95978 -33.61104 -31.44043 -30.72197 -28.76755 -27.69062 -25.97762 -22.47330 -21.88250 -19.78359 -19.48691 -17.52813 -16.70312 -16.40610 -16.01767 -15.16125 -14.53727 -14.15362 -14.00016 -13.31769 -12.85011 -12.73853 -12.60524 -12.49032 -11.93618 -11.66220 -11.54811 -11.37381 -11.03016 -10.90676 -10.30849 -10.22617 -10.15529 -9.95692 -9.90594 -9.75941 -9.67754 -9.25238 -8.55134 -6.06754 -4.06546 1.31754 2.71188 2.81189 3.14428 3.34999 3.41864 3.51099 4.06803 4.22740 4.36196 4.46887 4.66661 5.11153 5.21894 5.25585 5.28175 5.30151 5.44891 5.53543 5.62817 5.70718 6.00407 6.01627 6.08416 6.49571 6.81296 7.24915 7.31939 7.71475 8.22628 8.47584 8.95614 9.55196 11.05857 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.003813 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.582153 B = 7340.969825 C = 7799.945160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C 0.087 3.913 4 O -0.356 6.356 5 C 0.458 3.542 6 O -0.511 6.511 7 C -0.095 4.095 8 C -0.002 4.002 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.901 5.901 13 Si 0.876 3.124 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.145 4.145 18 C -0.121 4.121 19 H 0.141 0.859 20 Br -0.112 7.112 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.109 0.891 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -25.275 6.879 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C 0.012 3.988 4 O -0.274 6.274 5 C 0.302 3.698 6 O -0.398 6.398 7 C -0.132 4.132 8 C -0.040 4.040 9 C -0.565 4.565 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.539 5.539 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.183 4.183 18 C -0.217 4.217 19 H 0.159 0.841 20 Br -0.030 7.030 21 H 0.102 0.898 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.279 -24.870 6.674 25.958 hybrid contribution 0.672 0.154 0.569 0.894 sum 3.951 -24.716 7.243 26.057 Atomic orbital electron populations 1.21336 0.89811 1.03307 1.02847 1.21703 0.96686 0.89600 1.02244 1.22595 0.94160 0.85567 0.96458 1.86504 1.52110 1.21328 1.67447 1.24736 0.85018 0.81372 0.78720 1.90621 1.24619 1.79724 1.44814 1.21539 0.99667 0.92634 0.99386 1.19482 0.96124 0.90169 0.98201 1.21031 1.09423 0.93505 1.32496 0.90643 1.24944 0.97029 0.96394 0.94674 1.69901 1.39063 1.03809 1.41142 0.86815 0.84130 0.77667 0.81053 1.20155 1.21313 1.18598 1.23477 1.03182 1.00281 0.91348 1.26001 0.94272 1.05527 0.95925 0.84141 1.97376 1.31414 1.94390 1.79826 0.89837 0.92132 0.91470 0.89706 0.90557 0.88325 0.88330 0.95621 0.96048 0.92603 0.87243 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.75 37.16 0.36 -0.62 16 2 C -0.10 -0.97 2.59 -154.51 -0.40 -1.37 16 3 C 0.09 1.14 5.47 37.16 0.20 1.34 16 4 O -0.36 -5.55 8.79 -39.26 -0.34 -5.90 16 5 C 0.46 8.58 7.96 36.01 0.29 8.87 16 6 O -0.51 -11.03 15.73 -18.75 -0.29 -11.32 16 7 C -0.09 -1.85 5.75 -27.88 -0.16 -2.01 16 8 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 9 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 10 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 13 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.26 -6.58 6.54 56.52 0.37 -6.22 16 17 C -0.14 -1.04 9.79 -26.74 -0.26 -1.30 16 18 C -0.12 -1.05 6.62 -26.73 -0.18 -1.23 16 19 H 0.14 0.99 8.05 -51.93 -0.42 0.57 16 20 Br -0.11 -1.24 31.94 -68.01 -2.17 -3.42 16 21 H 0.08 0.85 6.87 -51.93 -0.36 0.50 16 22 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 1.19 5.78 -51.93 -0.30 0.89 16 25 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 26 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 27 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 28 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 29 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -32.03 293.45 -7.33 -39.35 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.37 Total: -4.14 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.67 Total: -9.71 kcal Atomic # 7 Polarization: -27.67 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.64 Total: -17.22 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Atomic # 35 Polarization: -1.24 SS G_CDS: -2.17 Total: -3.42 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.03 -7.33 -39.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123039872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.960 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds