Wall clock time and date at job start Tue Mar 31 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.54950 * 2 1 4 4 O 1.45199 * 109.47075 * 325.67288 * 3 2 1 5 5 C 1.34230 * 116.99614 * 179.97438 * 4 3 2 6 6 O 1.20824 * 120.00179 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.53003 * 109.47116 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47172 * 180.02562 * 8 7 5 10 10 H 1.08006 * 120.00258 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00172 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00174 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99921 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47347 * 89.99468 * 13 11 9 15 15 H 1.48501 * 109.47249 * 209.99861 * 13 11 9 16 16 H 1.48508 * 109.46795 * 329.99871 * 13 11 9 17 17 C 1.52994 * 117.49816 * 145.67339 * 2 1 3 18 18 C 1.52998 * 60.00131 * 107.50697 * 17 2 1 19 19 H 1.08994 * 117.50279 * 252.50710 * 18 17 2 20 20 Br 1.96605 * 117.49618 * 107.48517 * 18 17 2 21 21 H 1.08991 * 109.47219 * 34.41040 * 1 2 3 22 22 H 1.08999 * 109.47158 * 154.41604 * 1 2 3 23 23 H 1.09003 * 109.46878 * 274.41548 * 1 2 3 24 24 H 1.09002 * 109.47153 * 205.67229 * 3 2 1 25 25 H 1.09001 * 109.46832 * 85.67420 * 3 2 1 26 26 H 1.09000 * 109.47303 * 300.00327 * 7 5 4 27 27 H 1.09003 * 109.46535 * 60.00663 * 7 5 4 28 28 H 1.09000 * 109.47151 * 300.00236 * 8 7 5 29 29 H 1.09003 * 109.46860 * 60.00013 * 8 7 5 30 30 H 0.97004 * 120.00463 * 180.02562 * 12 11 9 31 31 H 1.09000 * 117.49792 * 214.99589 * 17 2 1 32 32 H 1.09002 * 117.50456 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 8 1.3787 2.3046 -0.7720 5 6 1.8214 3.5680 -0.8707 6 8 2.8527 3.8907 -0.3303 7 6 1.0325 4.5836 -1.6564 8 6 1.7511 5.9336 -1.6112 9 6 0.9619 6.9493 -2.3964 10 1 0.0398 6.6609 -2.8791 11 6 1.4165 8.2470 -2.4977 12 7 0.7276 9.1335 -3.1825 13 14 3.0110 8.7460 -1.6622 14 1 4.1459 8.5383 -2.5972 15 1 2.9415 10.1789 -1.2786 16 1 3.2132 7.9173 -0.4466 17 6 2.2365 -1.1207 0.7653 18 6 2.2368 -1.1210 -0.7647 19 1 1.6119 -1.8586 -1.2681 20 35 3.9236 -0.6773 -1.6721 21 1 -0.3633 0.8478 -0.5807 22 1 -0.3633 -0.9269 -0.4438 23 1 -0.3633 0.0791 1.0247 24 1 3.1823 1.3087 -0.4452 25 1 2.2767 1.7416 1.0248 26 1 0.9446 4.2536 -2.6916 27 1 0.0380 4.6862 -1.2221 28 1 1.8393 6.2637 -0.5761 29 1 2.7454 5.8306 -2.0457 30 1 1.0475 10.0464 -3.2541 31 1 3.1714 -0.8747 1.2687 32 1 1.6113 -1.8584 1.2685 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123039872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:11 Heat of formation + Delta-G solvation = -91.528283 kcal Electronic energy + Delta-G solvation = -15427.374051 eV Core-core repulsion = 12627.148312 eV Total energy + Delta-G solvation = -2800.225738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 290.030 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55360 -39.40361 -37.29815 -35.63379 -33.44866 -31.46894 -29.70011 -28.79471 -27.59479 -23.73323 -23.05550 -21.42019 -20.30669 -19.35532 -18.33207 -17.72220 -17.22124 -16.30112 -16.15698 -15.63416 -15.17461 -14.79470 -14.38547 -14.06695 -13.76840 -13.43589 -13.27720 -12.95360 -12.68197 -12.44868 -12.32476 -12.20148 -12.03008 -11.90027 -11.80723 -11.46946 -11.38949 -11.08305 -10.79125 -10.74064 -10.50115 -8.32096 -6.36129 0.62480 1.21863 1.33890 1.35933 1.49555 1.63222 2.34219 2.38113 3.03453 3.33550 3.53764 3.55895 3.90778 4.00948 4.27711 4.31101 4.36406 4.40045 4.63103 4.73732 4.85694 4.89129 4.97788 5.00972 5.25061 5.34393 5.36027 5.44657 5.59154 6.21257 6.68907 6.80493 7.29134 8.83499 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.029172 B = 0.003813 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.582153 B = 7340.969825 C = 7799.945160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C 0.079 3.921 4 O -0.346 6.346 5 C 0.468 3.532 6 O -0.543 6.543 7 C -0.091 4.091 8 C 0.002 3.998 9 C -0.531 4.531 10 H 0.052 0.948 11 C 0.016 3.984 12 N -0.942 5.942 13 Si 0.937 3.063 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.258 1.258 17 C -0.121 4.121 18 C -0.121 4.121 19 H 0.162 0.838 20 Br -0.143 7.143 21 H 0.061 0.939 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.017 0.983 29 H 0.014 0.986 30 H 0.268 0.732 31 H 0.109 0.891 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -27.245 8.058 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.117 4.117 3 C 0.005 3.995 4 O -0.263 6.263 5 C 0.313 3.687 6 O -0.433 6.433 7 C -0.128 4.128 8 C -0.036 4.036 9 C -0.569 4.569 10 H 0.071 0.929 11 C -0.182 4.182 12 N -0.582 5.582 13 Si 0.761 3.239 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.183 1.183 17 C -0.158 4.158 18 C -0.216 4.216 19 H 0.180 0.820 20 Br -0.061 7.061 21 H 0.080 0.920 22 H 0.100 0.900 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.328 -26.871 7.854 28.192 hybrid contribution 0.569 0.678 0.202 0.908 sum 3.897 -26.193 8.056 27.679 Atomic orbital electron populations 1.21335 0.88758 1.03508 1.03406 1.21689 0.97389 0.87998 1.04588 1.22863 0.93964 0.86813 0.95818 1.86480 1.52093 1.20214 1.67498 1.24355 0.84142 0.82276 0.77951 1.90611 1.25905 1.80510 1.46233 1.21334 0.99896 0.90787 1.00776 1.19322 0.95643 0.91919 0.96707 1.21336 1.08897 0.94490 1.32189 0.92949 1.25772 1.00339 0.96619 0.95429 1.70014 1.40978 1.04405 1.42825 0.85850 0.80206 0.77677 0.80127 1.19401 1.20314 1.18262 1.23650 1.03019 0.98828 0.90328 1.26218 0.92958 1.05359 0.97104 0.82024 1.97380 1.33575 1.94591 1.80579 0.91980 0.89978 0.90382 0.90754 0.90555 0.86983 0.86616 0.96419 0.96801 0.92275 0.87292 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.75 71.98 0.70 -0.89 16 2 C -0.12 -1.92 2.59 -52.18 -0.14 -2.05 16 3 C 0.08 1.98 5.47 71.98 0.39 2.37 16 4 O -0.35 -10.38 8.79 -51.42 -0.45 -10.83 16 5 C 0.47 17.14 7.96 71.24 0.57 17.70 16 6 O -0.54 -23.18 15.73 21.97 0.35 -22.83 16 7 C -0.09 -3.47 5.75 29.85 0.17 -3.30 16 8 C 0.00 0.08 3.33 29.85 0.10 0.18 16 9 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 10 H 0.05 3.15 7.99 -2.91 -0.02 3.12 16 11 C 0.02 0.97 5.47 84.66 0.46 1.43 16 12 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 13 Si 0.94 45.90 27.47 68.60 1.88 47.78 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 16 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 17 C -0.12 -1.31 9.79 30.59 0.30 -1.01 16 18 C -0.12 -1.77 6.62 30.59 0.20 -1.57 16 19 H 0.16 1.69 8.05 -2.39 -0.02 1.67 16 20 Br -0.14 -3.02 31.94 -20.37 -0.65 -3.67 16 21 H 0.06 1.15 6.87 -2.39 -0.02 1.13 16 22 H 0.08 0.80 7.90 -2.39 -0.02 0.78 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 2.04 5.78 -2.39 -0.01 2.03 16 25 H 0.08 1.88 8.13 -2.39 -0.02 1.86 16 26 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 27 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 28 H 0.02 0.88 7.16 -2.39 -0.02 0.86 16 29 H 0.01 0.68 7.53 -2.39 -0.02 0.67 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -68.91 293.45 5.49 -63.42 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.05 Total: 1.50 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 3.01 Total: -17.16 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.30 Total: -58.21 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.11 Total: -33.67 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Atomic # 35 Polarization: -3.02 SS G_CDS: -0.65 Total: -3.67 kcal Total: -68.91 5.49 -63.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123039872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.109 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds