Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 N 1.29047 * 124.91125 * 89.99987 * 13 12 2 15 15 C 1.31807 * 117.11902 * 179.97438 * 14 13 12 16 16 Br 1.89108 * 122.75535 * 179.97438 * 15 14 13 17 17 C 1.33699 * 114.48434 * 0.02562 * 15 14 13 18 18 S 1.70972 * 124.90964 * 269.69725 * 13 12 2 19 19 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 20 20 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 22 22 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 23 23 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 24 24 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 26 26 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 27 27 H 1.08002 * 126.03693 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 7 0.5584 -2.7703 -1.4196 15 6 0.4005 -4.0583 -1.1882 16 35 -1.1183 -5.0236 -1.7694 17 6 1.4018 -4.6259 -0.5079 18 16 2.6039 -3.3819 -0.1736 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0797 1.3445 -0.1083 23 1 1.5610 1.9274 -0.8309 24 1 2.9857 4.9183 0.7765 25 1 1.5611 -0.3871 -2.0628 26 1 3.0797 -0.6610 -1.1757 27 1 1.4646 -5.6645 -0.2182 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137774417.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = 53.674474 kcal Electronic energy + Delta-G solvation = -13197.250187 eV Core-core repulsion = 10742.533440 eV Total energy + Delta-G solvation = -2454.716747 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77115 -36.59373 -32.80591 -31.89728 -29.90854 -27.93183 -27.03706 -24.83905 -22.88553 -20.57612 -19.77581 -17.95478 -16.41966 -15.62030 -15.34706 -14.73087 -14.34954 -13.84044 -13.71972 -13.33670 -12.33501 -11.95055 -11.73314 -11.55074 -11.22815 -10.95380 -10.92917 -10.68696 -10.54603 -10.47191 -9.97754 -9.67730 -9.45953 -9.29418 -8.74724 -8.47373 -7.42142 -6.07248 -4.08706 0.59325 0.88977 1.46436 2.05124 2.56818 3.30498 3.36527 3.40395 4.27854 4.41859 5.00504 5.07049 5.12071 5.29435 5.52318 5.82843 5.95387 6.19964 6.37428 6.77591 7.14309 7.24315 7.54519 7.70827 7.95371 8.08079 8.42881 8.98242 9.55641 11.03677 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.003850 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.730266 B = 7270.410863 C = 7593.459166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.534 5.534 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.121 3.879 13 C 0.088 3.912 14 N -0.463 5.463 15 C 0.070 3.930 16 Br 0.006 6.994 17 C -0.248 4.248 18 S 0.187 5.813 19 H 0.017 0.983 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.033 0.967 23 H -0.004 1.004 24 H 0.262 0.738 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -19.519 -4.787 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.260 5.260 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.010 4.010 13 C -0.192 4.192 14 N -0.179 5.179 15 C -0.142 4.142 16 Br 0.088 6.912 17 C -0.391 4.391 18 S 0.441 5.559 19 H 0.036 0.964 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.014 0.986 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.811 -19.532 -4.389 20.216 hybrid contribution -0.975 0.641 -0.065 1.168 sum -3.785 -18.892 -4.453 19.775 Atomic orbital electron populations 1.22237 0.87945 0.99899 1.00974 1.62226 1.07977 1.18122 1.37643 1.19794 0.95478 0.80650 0.97174 1.21113 1.35042 0.96951 1.01543 0.91769 1.24978 0.95239 0.97268 0.97058 1.69951 1.38275 1.11517 1.34017 0.86474 0.78892 0.78427 0.83478 1.20581 1.21296 1.19844 1.20731 1.00835 0.83951 0.95529 1.27266 0.92371 1.02025 0.97527 1.66136 1.20655 1.08390 1.22685 1.21554 0.96569 0.91674 1.04430 1.96719 1.35822 1.69157 1.89457 1.26977 0.98610 1.05583 1.07913 1.84136 1.21845 0.98354 1.51557 0.96442 0.93238 0.90742 0.94929 0.98597 0.92843 0.92155 0.88745 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.18 60.06 0.55 1.33 15 2 N -0.53 -11.33 4.74 -245.82 -1.17 -12.49 15 3 C 0.19 4.88 4.72 -4.97 -0.02 4.86 15 4 C -0.51 -13.98 8.52 -34.44 -0.29 -14.28 15 5 H 0.06 1.76 7.10 -52.48 -0.37 1.39 15 6 C 0.06 1.56 5.46 -17.82 -0.10 1.47 15 7 N -0.90 -26.17 13.29 55.43 0.74 -25.43 15 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 15 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 12 C 0.12 2.12 5.54 -4.98 -0.03 2.10 15 13 C 0.09 1.40 6.05 -13.45 -0.08 1.32 15 14 N -0.46 -7.61 9.65 -10.27 -0.10 -7.71 15 15 C 0.07 0.99 7.18 -19.15 -0.14 0.85 15 16 Br 0.01 0.07 33.99 -68.01 -2.31 -2.24 15 17 C -0.25 -2.95 11.20 29.14 0.33 -2.62 15 18 S 0.19 2.38 23.18 -107.50 -2.49 -0.11 15 19 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 20 H 0.05 0.95 6.50 -51.93 -0.34 0.62 15 21 H 0.07 1.60 6.86 -51.93 -0.36 1.25 15 22 H 0.03 0.85 7.93 -51.93 -0.41 0.44 15 23 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 15 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 25 H 0.06 1.07 8.12 -51.93 -0.42 0.64 15 26 H 0.09 1.51 7.93 -51.93 -0.41 1.10 15 27 H 0.18 1.59 8.06 -52.49 -0.42 1.17 15 LS Contribution 270.63 15.07 4.08 4.08 Total: -1.00 -29.39 270.63 -8.77 -38.17 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -2.71 Total: -5.66 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 0.22 Total: -4.98 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.53 Total: -45.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.49 Total: -0.11 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -2.31 Total: -2.24 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.39 -8.77 -38.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137774417.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.840 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds