Wall clock time and date at job start Tue Mar 31 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 N 1.29047 * 124.91125 * 89.99987 * 13 12 2 15 15 C 1.31807 * 117.11902 * 179.97438 * 14 13 12 16 16 Br 1.89108 * 122.75535 * 179.97438 * 15 14 13 17 17 C 1.33699 * 114.48434 * 0.02562 * 15 14 13 18 18 S 1.70972 * 124.90964 * 269.69725 * 13 12 2 19 19 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 20 20 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 22 22 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 23 23 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 24 24 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 26 26 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 27 27 H 1.08002 * 126.03693 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 7 0.5584 -2.7703 -1.4196 15 6 0.4005 -4.0583 -1.1882 16 35 -1.1183 -5.0236 -1.7694 17 6 1.4018 -4.6259 -0.5079 18 16 2.6039 -3.3819 -0.1736 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0797 1.3445 -0.1083 23 1 1.5610 1.9274 -0.8309 24 1 2.9857 4.9183 0.7765 25 1 1.5611 -0.3871 -2.0628 26 1 3.0797 -0.6610 -1.1757 27 1 1.4646 -5.6645 -0.2182 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137774417.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:40 Heat of formation + Delta-G solvation = 34.006885 kcal Electronic energy + Delta-G solvation = -13198.103037 eV Core-core repulsion = 10742.533440 eV Total energy + Delta-G solvation = -2455.569597 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 289.978 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.90504 -38.25524 -34.78150 -33.10736 -31.11466 -29.40310 -28.79268 -26.48346 -24.41171 -22.30444 -20.90060 -19.12096 -18.43440 -17.03248 -16.66001 -16.43385 -15.93368 -15.26829 -15.19805 -14.66172 -14.04712 -13.66495 -13.35453 -12.92322 -12.76650 -12.63021 -12.58331 -12.36729 -11.99008 -11.91113 -11.44239 -11.37980 -10.77935 -10.61214 -10.51297 -9.79667 -9.17584 -8.20099 -6.29446 -0.47627 -0.09817 0.37287 1.02823 1.42617 1.43957 1.44820 1.55192 2.41464 3.05679 3.13470 3.45941 3.93530 4.17854 4.26641 4.43680 4.54985 4.64658 4.74318 5.04953 5.16035 5.23799 5.63571 5.99422 6.16827 6.46576 6.48611 6.84789 7.39812 8.90929 Molecular weight = 289.98amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.003850 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.730266 B = 7270.410863 C = 7593.459166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.537 5.537 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.005 3.995 7 N -0.932 5.932 8 Si 0.967 3.033 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.124 3.876 13 C 0.051 3.949 14 N -0.483 5.483 15 C 0.040 3.960 16 Br 0.020 6.980 17 C -0.224 4.224 18 S 0.237 5.763 19 H 0.010 0.990 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.018 0.982 23 H -0.032 1.032 24 H 0.265 0.735 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 -21.138 -3.700 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.262 5.262 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.792 3.208 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.191 1.191 12 C -0.007 4.007 13 C -0.228 4.228 14 N -0.200 5.200 15 C -0.172 4.172 16 Br 0.102 6.898 17 C -0.367 4.367 18 S 0.491 5.509 19 H 0.029 0.971 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.036 0.964 23 H -0.014 1.014 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.804 -21.171 -3.309 21.610 hybrid contribution -0.966 1.002 -0.442 1.460 sum -3.769 -20.169 -3.751 20.858 Atomic orbital electron populations 1.22106 0.87586 1.00353 0.99888 1.62093 1.08276 1.15963 1.39912 1.19451 0.94376 0.82562 0.95391 1.21417 1.35002 0.97523 1.02269 0.91983 1.25845 0.95017 0.97950 1.00529 1.70066 1.39244 1.11934 1.35984 0.85415 0.78918 0.77251 0.79233 1.19683 1.20878 1.19150 1.20644 1.01243 0.85008 0.93756 1.26805 0.93956 1.01788 1.00240 1.66070 1.21217 1.09817 1.22911 1.21812 0.98073 0.91283 1.06001 1.96720 1.35241 1.68347 1.89485 1.27461 0.97043 1.06904 1.05290 1.83936 1.20539 0.96911 1.49561 0.97111 0.91871 0.92157 0.96380 1.01382 0.92626 0.92930 0.87697 0.76533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.03 9.18 127.69 1.17 3.21 15 2 N -0.54 -23.03 4.74 -931.65 -4.42 -27.45 15 3 C 0.21 10.77 4.72 85.56 0.40 11.17 15 4 C -0.52 -29.17 8.52 25.60 0.22 -28.95 15 5 H 0.06 3.41 7.10 -2.91 -0.02 3.39 15 6 C 0.00 0.28 5.46 84.65 0.46 0.74 15 7 N -0.93 -54.96 13.29 21.45 0.28 -54.68 15 8 Si 0.97 43.74 29.54 68.60 2.03 45.77 15 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 12 C 0.12 4.39 5.54 85.55 0.47 4.86 15 13 C 0.05 1.57 6.05 88.52 0.54 2.10 15 14 N -0.48 -15.36 9.65 -186.39 -1.80 -17.16 15 15 C 0.04 1.04 7.18 83.67 0.60 1.65 15 16 Br 0.02 0.44 33.99 -20.37 -0.69 -0.25 15 17 C -0.22 -4.62 11.20 66.79 0.75 -3.87 15 18 S 0.24 5.45 23.18 -56.49 -1.31 4.14 15 19 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 20 H 0.06 2.42 6.50 -2.39 -0.02 2.41 15 21 H 0.06 2.62 6.86 -2.39 -0.02 2.60 15 22 H 0.02 0.98 7.93 -2.38 -0.02 0.96 15 23 H -0.03 -1.78 8.12 -2.39 -0.02 -1.80 15 24 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 25 H 0.05 1.91 8.12 -2.39 -0.02 1.89 15 26 H 0.10 3.38 7.93 -2.39 -0.02 3.36 15 27 H 0.22 2.81 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -62.64 270.63 -0.12 -62.76 By element: Atomic # 1 Polarization: -5.21 SS G_CDS: 1.18 Total: -4.03 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.61 Total: -9.09 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -5.93 Total: -99.29 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.31 Total: 4.14 kcal Atomic # 35 Polarization: 0.44 SS G_CDS: -0.69 Total: -0.25 kcal Total: -62.64 -0.12 -62.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137774417.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.764 kcal (2) G-P(sol) polarization free energy of solvation -62.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds