Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46623 * 2 1 4 4 N 1.46898 * 109.46878 * 174.87830 * 3 2 1 5 5 C 1.46903 * 111.00376 * 199.71074 * 4 3 2 6 6 C 1.50703 * 109.46896 * 66.04643 * 5 4 3 7 7 H 1.08001 * 119.99829 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99568 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00269 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99671 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47217 * 89.99993 * 10 8 6 12 12 H 1.48501 * 109.47172 * 210.00192 * 10 8 6 13 13 H 1.48500 * 109.47290 * 329.99663 * 10 8 6 14 14 C 1.46905 * 111.00032 * 75.75459 * 4 3 2 15 15 C 1.50703 * 109.47175 * 199.76513 * 14 4 3 16 16 C 1.38254 * 119.99472 * 84.41169 * 15 14 4 17 17 C 1.38221 * 119.99617 * 179.97438 * 16 15 14 18 18 C 1.38256 * 119.99834 * 0.02562 * 17 16 15 19 19 C 1.38205 * 120.00302 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00154 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47105 * 359.97438 * 20 19 18 22 22 C 1.53002 * 109.47295 * 119.99791 * 20 19 18 23 23 C 1.53002 * 109.47260 * 240.00035 * 20 19 18 24 24 C 1.38212 * 119.99998 * 264.68005 * 15 14 4 25 25 H 1.09001 * 109.47087 * 299.99159 * 1 2 3 26 26 H 1.08994 * 109.47471 * 59.99607 * 1 2 3 27 27 H 1.09009 * 109.46700 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47087 * 240.00840 * 2 1 3 29 29 H 1.08994 * 109.47471 * 120.00393 * 2 1 3 30 30 H 1.08998 * 109.47234 * 54.88689 * 3 2 1 31 31 H 1.08996 * 109.47859 * 294.87790 * 3 2 1 32 32 H 1.09001 * 109.47419 * 186.04624 * 5 4 3 33 33 H 1.09001 * 109.46873 * 306.04725 * 5 4 3 34 34 H 0.96997 * 119.99817 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46668 * 79.77037 * 14 4 3 36 36 H 1.08997 * 109.47034 * 319.76943 * 14 4 3 37 37 H 1.07995 * 120.00383 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.99768 * 179.97438 * 17 16 15 39 39 H 1.08006 * 119.99789 * 179.97438 * 18 17 16 40 40 H 1.08999 * 109.47537 * 60.00197 * 21 20 19 41 41 H 1.09005 * 109.47598 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47500 * 299.99527 * 21 20 19 43 43 H 1.09000 * 109.46637 * 60.00156 * 22 20 19 44 44 H 1.08995 * 109.47380 * 180.02562 * 22 20 19 45 45 H 1.08998 * 109.47262 * 300.00464 * 22 20 19 46 46 H 1.08994 * 109.47069 * 59.99736 * 23 20 19 47 47 H 1.09005 * 109.47202 * 180.02562 * 23 20 19 48 48 H 1.09000 * 109.46765 * 299.99910 * 23 20 19 49 49 H 1.07994 * 120.00224 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5037 1.4445 0.1236 5 6 3.9910 2.7494 0.5902 6 6 3.5119 2.9901 1.9987 7 1 2.9064 2.2478 2.4974 8 6 3.8467 4.1581 2.6505 9 7 4.5836 5.0622 2.0430 10 14 3.2535 4.4562 4.3965 11 1 4.2543 3.9257 5.3567 12 1 3.0794 5.9143 4.6180 13 1 1.9550 3.7658 4.6028 14 6 4.1397 1.0683 -1.1460 15 6 5.5517 0.6109 -0.8844 16 6 5.7966 -0.6981 -0.5132 17 6 7.0916 -1.1177 -0.2737 18 6 8.1419 -0.2282 -0.4050 19 6 7.8969 1.0806 -0.7750 20 6 9.0416 2.0503 -0.9175 21 6 10.3569 1.3371 -0.5978 22 6 9.0845 2.5817 -2.3516 23 6 8.8457 3.2168 0.0530 24 6 6.6011 1.5016 -1.0102 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6037 1.9821 0.8406 31 1 1.7534 1.9293 -0.9322 32 1 5.0808 2.7585 0.5706 33 1 3.6092 3.5344 -0.0626 34 1 4.8193 5.8837 2.5017 35 1 4.1547 1.9295 -1.8140 36 1 3.5755 0.2588 -1.6092 37 1 4.9762 -1.3928 -0.4103 38 1 7.2830 -2.1402 0.0166 39 1 9.1538 -0.5560 -0.2175 40 1 10.4968 0.5059 -1.2888 41 1 11.1850 2.0383 -0.7012 42 1 10.3262 0.9589 0.4241 43 1 8.1474 3.0899 -2.5789 44 1 9.9127 3.2826 -2.4548 45 1 9.2241 1.7506 -3.0430 46 1 8.8151 2.8383 1.0746 47 1 9.6735 3.9185 -0.0504 48 1 7.9086 3.7250 -0.1743 49 1 6.4092 2.5253 -1.2955 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141104303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -15.504289 kcal Electronic energy + Delta-G solvation = -23878.554136 eV Core-core repulsion = 20803.703527 eV Total energy + Delta-G solvation = -3074.850609 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86518 -38.82632 -37.06077 -34.95340 -34.05402 -32.18090 -30.90178 -29.31234 -28.38114 -28.13638 -26.99086 -25.65839 -23.86544 -22.97945 -22.29711 -21.40856 -19.61158 -18.54467 -17.67668 -16.84027 -16.22734 -16.20113 -16.15248 -15.69899 -15.21750 -15.11188 -15.03005 -14.60625 -14.36670 -14.00529 -13.94334 -13.60385 -13.48762 -13.20168 -12.95196 -12.90278 -12.77313 -12.69653 -12.57375 -12.52334 -12.50308 -12.41445 -12.20853 -11.98146 -11.81877 -11.65595 -11.46494 -11.35528 -11.24516 -11.15893 -10.60058 -9.57741 -9.40198 -8.99249 -8.19301 -6.28157 0.57195 0.61702 1.37652 1.39218 1.49871 2.38913 2.88117 3.13056 3.46929 3.70763 3.85299 4.02694 4.12222 4.13324 4.18935 4.29982 4.33064 4.40767 4.46662 4.51665 4.62891 4.67031 4.70220 4.73783 4.76516 4.84741 4.88889 4.95148 4.97794 5.00089 5.02793 5.12967 5.19225 5.19529 5.22493 5.24577 5.30728 5.34569 5.41343 5.41869 5.44541 5.51821 5.65412 5.70434 5.82734 5.87805 6.08429 6.25503 6.39976 6.65208 6.87432 7.40227 8.91352 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.005827 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.263474 B = 4804.251058 C = 6564.189628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.533 5.533 5 C 0.212 3.788 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.963 3.037 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.264 1.264 14 C 0.093 3.907 15 C -0.079 4.079 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.130 4.130 19 C -0.080 4.080 20 C -0.029 4.029 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.119 4.119 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.012 0.988 33 H -0.049 1.049 34 H 0.262 0.738 35 H 0.016 0.984 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.028 0.972 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.213 -11.493 -7.795 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.068 4.068 4 N -0.257 5.257 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.788 3.212 11 H -0.201 1.201 12 H -0.207 1.207 13 H -0.188 1.188 14 C -0.034 4.034 15 C -0.080 4.080 16 C -0.132 4.132 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.080 4.080 20 C -0.029 4.029 21 C -0.193 4.193 22 C -0.190 4.190 23 C -0.191 4.191 24 C -0.138 4.138 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.030 0.970 33 H -0.032 1.032 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.395 -11.659 -7.427 15.231 hybrid contribution -0.704 1.692 0.328 1.862 sum 5.692 -9.966 -7.100 13.495 Atomic orbital electron populations 1.21700 0.94474 1.02378 1.01636 1.21445 0.96168 0.94836 1.02031 1.22103 0.87629 0.97928 0.99124 1.62087 1.05653 1.31232 1.26742 1.19361 0.94697 0.83568 0.93830 1.21428 1.32157 1.02684 0.99537 0.92259 1.25843 0.95403 0.95748 1.02421 1.70090 1.38696 1.09150 1.39095 0.85480 0.79007 0.77229 0.79518 1.20101 1.20683 1.18816 1.21070 0.92567 0.99003 0.90807 1.19843 0.94288 0.94532 0.99303 1.21098 0.97730 0.95002 0.99345 1.21416 0.92157 1.00700 0.99742 1.21390 1.00399 0.92547 1.00446 1.19980 0.93638 0.95274 0.99083 1.19534 0.93603 0.93559 0.96179 1.21905 0.94806 1.00739 1.01819 1.21836 1.01617 1.01156 0.94388 1.21835 1.01046 0.97724 0.98539 1.20841 0.93272 0.97966 1.01709 0.93436 0.92552 0.90884 0.91458 0.92292 0.92375 0.96351 0.96966 1.03168 0.92895 0.96563 0.88693 0.85235 0.83476 0.83500 0.90979 0.91146 0.92457 0.94306 0.90870 0.91689 0.94074 0.90762 0.95252 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.11 -3.24 5.98 30.60 0.18 -3.06 16 3 C 0.06 2.38 4.79 86.30 0.41 2.80 16 4 N -0.53 -23.87 4.34 -905.34 -3.93 -27.80 16 5 C 0.21 11.73 4.54 85.56 0.39 12.12 16 6 C -0.52 -30.43 8.23 25.60 0.21 -30.22 16 7 H 0.06 3.43 7.31 -2.91 -0.02 3.41 16 8 C 0.00 0.23 5.46 84.66 0.46 0.69 16 9 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 10 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.09 3.56 4.95 85.56 0.42 3.98 16 15 C -0.08 -2.94 5.04 -19.87 -0.10 -3.04 16 16 C -0.11 -3.59 9.72 22.27 0.22 -3.37 16 17 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 18 C -0.13 -3.59 8.98 22.27 0.20 -3.39 16 19 C -0.08 -2.55 4.76 -19.87 -0.09 -2.64 16 20 C -0.03 -0.78 0.85 -52.93 -0.05 -0.83 16 21 C -0.14 -2.77 7.13 71.98 0.51 -2.25 16 22 C -0.13 -3.24 8.29 71.98 0.60 -2.64 16 23 C -0.13 -4.31 8.28 71.98 0.60 -3.71 16 24 C -0.12 -4.53 7.06 22.27 0.16 -4.37 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.07 1.81 6.89 -2.39 -0.02 1.80 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.62 6.58 -2.39 -0.02 2.60 16 31 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 32 H 0.01 0.74 6.31 -2.39 -0.02 0.72 16 33 H -0.05 -3.01 8.12 -2.39 -0.02 -3.03 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 35 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 36 H 0.09 3.05 6.54 -2.39 -0.02 3.03 16 37 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.15 3.15 5.90 -2.91 -0.02 3.14 16 40 H 0.07 1.25 7.51 -2.39 -0.02 1.23 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.06 1.19 7.51 -2.38 -0.02 1.17 16 43 H 0.04 1.08 7.40 -2.39 -0.02 1.06 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.03 1.12 7.38 -2.39 -0.02 1.10 16 49 H 0.09 3.79 7.02 -2.91 -0.02 3.77 16 Total: -1.00 -67.19 380.59 4.31 -62.88 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.88 Total: 20.14 kcal Atomic # 6 Polarization: -50.97 SS G_CDS: 5.06 Total: -45.91 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.65 Total: -84.68 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.19 4.31 -62.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141104303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.373 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds