Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47395 * 2 1 4 4 C 1.53001 * 109.47160 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47091 * 181.08389 * 4 3 2 6 6 C 1.46897 * 111.00428 * 299.42041 * 5 4 3 7 7 C 1.50701 * 109.46891 * 294.05298 * 6 5 4 8 8 H 1.07996 * 120.00083 * 355.08512 * 7 6 5 9 9 C 1.37883 * 119.99850 * 175.08108 * 7 6 5 10 10 N 1.31518 * 119.99840 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99882 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47085 * 60.00517 * 11 9 7 13 13 H 1.48497 * 109.46808 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47500 * 300.00315 * 11 9 7 15 15 C 1.46904 * 110.99897 * 63.37957 * 5 4 3 16 16 C 1.50698 * 109.47285 * 66.04466 * 15 5 4 17 17 C 1.38226 * 120.00159 * 90.00405 * 16 15 5 18 18 C 1.38240 * 120.00056 * 179.97438 * 17 16 15 19 19 C 1.38239 * 119.99888 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99822 * 179.97438 * 19 18 17 21 21 C 1.53007 * 109.47088 * 89.99748 * 20 19 18 22 22 C 1.52993 * 109.46992 * 179.97438 * 21 20 19 23 23 C 1.38230 * 119.99709 * 0.25157 * 19 18 17 24 24 C 1.38239 * 119.99479 * 270.02119 * 16 15 5 25 25 H 1.08996 * 109.47674 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47382 * 300.00379 * 1 2 3 27 27 H 1.09004 * 109.47086 * 59.99748 * 1 2 3 28 28 H 1.09007 * 109.46917 * 239.99374 * 2 1 3 29 29 H 1.09004 * 109.47086 * 120.00252 * 2 1 3 30 30 H 1.08998 * 109.47545 * 60.00013 * 3 2 1 31 31 H 1.09003 * 109.46999 * 299.99667 * 3 2 1 32 32 H 1.09003 * 109.47358 * 61.08500 * 4 3 2 33 33 H 1.09001 * 109.47155 * 301.08132 * 4 3 2 34 34 H 1.08999 * 109.46992 * 54.04933 * 6 5 4 35 35 H 1.08996 * 109.47552 * 174.04956 * 6 5 4 36 36 H 0.96998 * 119.99896 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.46982 * 306.03964 * 15 5 4 38 38 H 1.08999 * 109.46780 * 186.04619 * 15 5 4 39 39 H 1.08001 * 120.00209 * 359.97438 * 17 16 15 40 40 H 1.07998 * 119.99807 * 179.97438 * 18 17 16 41 41 H 1.08999 * 109.47180 * 209.99596 * 20 19 18 42 42 H 1.09003 * 109.47309 * 330.00162 * 20 19 18 43 43 H 1.08999 * 109.46985 * 299.99967 * 21 20 19 44 44 H 1.09003 * 109.46707 * 60.00045 * 21 20 19 45 45 H 1.09001 * 109.47166 * 59.99777 * 22 21 20 46 46 H 1.09001 * 109.47050 * 180.02562 * 22 21 20 47 47 H 1.09003 * 109.47407 * 300.00434 * 22 21 20 48 48 H 1.07997 * 119.99830 * 179.72710 * 23 19 18 49 49 H 1.07995 * 120.00252 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0597 2.8271 0.0256 6 6 3.5997 3.5707 -1.1548 7 6 4.2311 2.9882 -2.3930 8 1 4.9667 2.2024 -2.3054 9 6 3.8697 3.4586 -3.6377 10 7 2.9742 4.4159 -3.7443 11 14 4.6529 2.7372 -5.1724 12 1 4.3612 1.2827 -5.2400 13 1 4.0982 3.4102 -6.3742 14 1 6.1224 2.9455 -5.1230 15 6 3.6564 3.5047 1.2650 16 6 4.3462 2.8582 2.4384 17 6 5.5783 3.3236 2.8581 18 6 6.2109 2.7308 3.9349 19 6 5.6115 1.6723 4.5917 20 6 6.3014 1.0257 5.7651 21 6 5.8812 1.7316 7.0560 22 6 6.5811 1.0747 8.2474 23 6 4.3821 1.2032 4.1683 24 6 3.7470 1.7994 3.0949 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9330 0.9456 -0.9004 33 1 3.9337 0.9117 0.8793 34 1 2.5149 3.4964 -1.2309 35 1 3.8863 4.6179 -1.0590 36 1 2.7202 4.7471 -4.6199 37 1 2.5764 3.4236 1.3885 38 1 3.9380 4.5564 1.2122 39 1 6.0468 4.1503 2.3448 40 1 7.1737 3.0942 4.2626 41 1 6.0197 -0.0259 5.8179 42 1 7.3813 1.1070 5.6416 43 1 6.1628 2.7832 7.0033 44 1 4.8012 1.6503 7.1795 45 1 7.6611 1.1555 8.1241 46 1 6.2814 1.5773 9.1670 47 1 6.2991 0.0231 8.2999 48 1 3.9158 0.3734 4.6786 49 1 2.7847 1.4354 2.7665 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142364078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -7.646353 kcal Electronic energy + Delta-G solvation = -23123.840060 eV Core-core repulsion = 20049.330196 eV Total energy + Delta-G solvation = -3074.509864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.50343 -37.43876 -35.16415 -33.87033 -32.61009 -31.20257 -30.68801 -28.37556 -27.88195 -25.94013 -24.16284 -23.12257 -22.42662 -21.76092 -21.12722 -20.45063 -19.17697 -16.28812 -15.88008 -15.74542 -15.25705 -15.00330 -14.76322 -14.51418 -14.22334 -13.84463 -13.75943 -13.52504 -13.17816 -13.12207 -12.45290 -12.42868 -12.22080 -12.13097 -12.04898 -11.70826 -11.33377 -11.26544 -11.09711 -10.97419 -10.86049 -10.77932 -10.70258 -10.63801 -10.55565 -10.49113 -10.31464 -9.87381 -9.66304 -9.19276 -8.62936 -8.41603 -8.24683 -7.10120 -6.00294 -4.00961 1.59149 1.67584 3.34648 3.38582 3.41862 3.97161 4.45556 4.71926 4.77814 4.94616 5.06521 5.14718 5.23668 5.26703 5.32929 5.35496 5.36205 5.37900 5.41184 5.56693 5.60235 5.66313 5.73831 5.77241 5.81547 5.85465 5.96574 6.04034 6.09017 6.12128 6.15349 6.16605 6.25294 6.30898 6.36125 6.39455 6.49838 6.59083 6.68204 6.80791 6.81278 6.98164 7.04417 7.27992 7.34885 7.46068 7.83899 8.12750 8.24076 8.58843 9.06990 9.62929 11.10260 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.003563 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.066325 B = 7857.420316 C = 8804.795134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.157 4.157 4 C 0.065 3.935 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.084 3.916 16 C -0.061 4.061 17 C -0.098 4.098 18 C -0.120 4.120 19 C -0.095 4.095 20 C -0.077 4.077 21 C -0.119 4.119 22 C -0.153 4.153 23 C -0.121 4.121 24 C -0.112 4.112 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.003 0.997 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.114 0.886 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 -6.681 18.746 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.196 4.196 4 C -0.064 4.064 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.044 4.044 16 C -0.062 4.062 17 C -0.117 4.117 18 C -0.138 4.138 19 C -0.095 4.095 20 C -0.115 4.115 21 C -0.156 4.156 22 C -0.210 4.210 23 C -0.139 4.139 24 C -0.130 4.130 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.132 0.868 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.127 -6.554 18.573 19.810 hybrid contribution -0.570 -0.264 -1.003 1.183 sum 1.557 -6.817 17.570 18.911 Atomic orbital electron populations 1.21769 0.96617 1.00728 1.01632 1.21420 0.95162 0.97588 1.01371 1.22255 0.99003 0.96221 1.02160 1.22063 0.91457 0.91371 1.01494 1.62380 1.59214 1.02092 1.01412 1.19793 0.94487 0.93273 0.86029 1.21100 1.22929 1.20161 0.89974 0.92034 1.24964 0.95269 0.95247 0.99051 1.69946 1.32056 1.27832 1.24102 0.86601 0.79657 0.79161 0.82241 1.20317 1.21430 1.20213 1.21081 0.96391 0.97909 0.89003 1.19954 0.94889 0.95630 0.95713 1.21037 0.94556 1.00108 0.95973 1.20951 0.99738 0.96632 0.96517 1.19753 0.95437 0.97009 0.97326 1.20582 0.99756 0.99066 0.92062 1.21512 1.00566 0.99876 0.93671 1.21795 1.00601 1.00695 0.97918 1.20895 0.95240 1.00260 0.97547 1.21068 1.00076 0.96129 0.95760 0.93436 0.93287 0.92699 0.92059 0.92873 0.93108 0.90489 0.90351 0.92650 0.97900 0.95831 0.92954 0.94591 0.90829 0.86054 0.86680 0.91389 0.91330 0.91899 0.91959 0.92763 0.92838 0.92799 0.86811 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.15 0.37 -1.64 16 2 C -0.12 -1.75 5.93 -26.74 -0.16 -1.91 16 3 C -0.16 -2.80 4.46 -26.73 -0.12 -2.92 16 4 C 0.06 1.26 4.79 -3.82 -0.02 1.24 16 5 N -0.53 -11.29 4.69 -237.52 -1.11 -12.40 16 6 C 0.19 4.83 4.49 -4.98 -0.02 4.81 16 7 C -0.50 -14.00 8.40 -34.44 -0.29 -14.29 16 8 H 0.06 1.72 7.29 -52.49 -0.38 1.34 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.08 1.53 4.93 -4.97 -0.02 1.50 16 16 C -0.06 -0.98 4.89 -104.63 -0.51 -1.49 16 17 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 18 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 19 C -0.10 -1.17 5.13 -104.63 -0.54 -1.70 16 20 C -0.08 -0.74 5.35 -27.88 -0.15 -0.89 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 22 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 23 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16 24 C -0.11 -1.62 7.91 -39.58 -0.31 -1.93 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.86 5.72 -51.93 -0.30 0.56 16 31 H 0.08 1.63 6.35 -51.93 -0.33 1.30 16 32 H 0.08 1.69 6.94 -51.93 -0.36 1.33 16 33 H 0.06 0.99 5.93 -51.93 -0.31 0.69 16 34 H 0.00 0.09 6.04 -51.93 -0.31 -0.23 16 35 H 0.02 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 37 H 0.04 0.64 6.03 -51.93 -0.31 0.33 16 38 H 0.07 1.34 7.88 -51.93 -0.41 0.93 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 49 H 0.12 1.64 7.31 -52.49 -0.38 1.25 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -29.04 382.91 -11.42 -40.46 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.98 Total: 0.69 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -2.81 Total: -25.40 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.38 Total: -38.22 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.04 -11.42 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142364078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.814 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds