Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47395 * 2 1 4 4 C 1.53001 * 109.47160 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.47091 * 181.08389 * 4 3 2 6 6 C 1.46897 * 111.00428 * 299.42041 * 5 4 3 7 7 C 1.50701 * 109.46891 * 294.05298 * 6 5 4 8 8 H 1.07996 * 120.00083 * 355.08512 * 7 6 5 9 9 C 1.37883 * 119.99850 * 175.08108 * 7 6 5 10 10 N 1.31518 * 119.99840 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99882 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47085 * 60.00517 * 11 9 7 13 13 H 1.48497 * 109.46808 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47500 * 300.00315 * 11 9 7 15 15 C 1.46904 * 110.99897 * 63.37957 * 5 4 3 16 16 C 1.50698 * 109.47285 * 66.04466 * 15 5 4 17 17 C 1.38226 * 120.00159 * 90.00405 * 16 15 5 18 18 C 1.38240 * 120.00056 * 179.97438 * 17 16 15 19 19 C 1.38239 * 119.99888 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99822 * 179.97438 * 19 18 17 21 21 C 1.53007 * 109.47088 * 89.99748 * 20 19 18 22 22 C 1.52993 * 109.46992 * 179.97438 * 21 20 19 23 23 C 1.38230 * 119.99709 * 0.25157 * 19 18 17 24 24 C 1.38239 * 119.99479 * 270.02119 * 16 15 5 25 25 H 1.08996 * 109.47674 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47382 * 300.00379 * 1 2 3 27 27 H 1.09004 * 109.47086 * 59.99748 * 1 2 3 28 28 H 1.09007 * 109.46917 * 239.99374 * 2 1 3 29 29 H 1.09004 * 109.47086 * 120.00252 * 2 1 3 30 30 H 1.08998 * 109.47545 * 60.00013 * 3 2 1 31 31 H 1.09003 * 109.46999 * 299.99667 * 3 2 1 32 32 H 1.09003 * 109.47358 * 61.08500 * 4 3 2 33 33 H 1.09001 * 109.47155 * 301.08132 * 4 3 2 34 34 H 1.08999 * 109.46992 * 54.04933 * 6 5 4 35 35 H 1.08996 * 109.47552 * 174.04956 * 6 5 4 36 36 H 0.96998 * 119.99896 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.46982 * 306.03964 * 15 5 4 38 38 H 1.08999 * 109.46780 * 186.04619 * 15 5 4 39 39 H 1.08001 * 120.00209 * 359.97438 * 17 16 15 40 40 H 1.07998 * 119.99807 * 179.97438 * 18 17 16 41 41 H 1.08999 * 109.47180 * 209.99596 * 20 19 18 42 42 H 1.09003 * 109.47309 * 330.00162 * 20 19 18 43 43 H 1.08999 * 109.46985 * 299.99967 * 21 20 19 44 44 H 1.09003 * 109.46707 * 60.00045 * 21 20 19 45 45 H 1.09001 * 109.47166 * 59.99777 * 22 21 20 46 46 H 1.09001 * 109.47050 * 180.02562 * 22 21 20 47 47 H 1.09003 * 109.47407 * 300.00434 * 22 21 20 48 48 H 1.07997 * 119.99830 * 179.72710 * 23 19 18 49 49 H 1.07995 * 120.00252 * 0.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0597 2.8271 0.0256 6 6 3.5997 3.5707 -1.1548 7 6 4.2311 2.9882 -2.3930 8 1 4.9667 2.2024 -2.3054 9 6 3.8697 3.4586 -3.6377 10 7 2.9742 4.4159 -3.7443 11 14 4.6529 2.7372 -5.1724 12 1 4.3612 1.2827 -5.2400 13 1 4.0982 3.4102 -6.3742 14 1 6.1224 2.9455 -5.1230 15 6 3.6564 3.5047 1.2650 16 6 4.3462 2.8582 2.4384 17 6 5.5783 3.3236 2.8581 18 6 6.2109 2.7308 3.9349 19 6 5.6115 1.6723 4.5917 20 6 6.3014 1.0257 5.7651 21 6 5.8812 1.7316 7.0560 22 6 6.5811 1.0747 8.2474 23 6 4.3821 1.2032 4.1683 24 6 3.7470 1.7994 3.0949 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.9330 0.9456 -0.9004 33 1 3.9337 0.9117 0.8793 34 1 2.5149 3.4964 -1.2309 35 1 3.8863 4.6179 -1.0590 36 1 2.7202 4.7471 -4.6199 37 1 2.5764 3.4236 1.3885 38 1 3.9380 4.5564 1.2122 39 1 6.0468 4.1503 2.3448 40 1 7.1737 3.0942 4.2626 41 1 6.0197 -0.0259 5.8179 42 1 7.3813 1.1070 5.6416 43 1 6.1628 2.7832 7.0033 44 1 4.8012 1.6503 7.1795 45 1 7.6611 1.1555 8.1241 46 1 6.2814 1.5773 9.1670 47 1 6.2991 0.0231 8.2999 48 1 3.9158 0.3734 4.6786 49 1 2.7847 1.4354 2.7665 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142364078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -21.140728 kcal Electronic energy + Delta-G solvation = -23124.425220 eV Core-core repulsion = 20049.330196 eV Total energy + Delta-G solvation = -3075.095024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67946 -38.91461 -36.05375 -35.34932 -34.49964 -32.36884 -31.76983 -29.84907 -29.36191 -27.36172 -25.44427 -24.86896 -23.52947 -22.72362 -22.39981 -21.54018 -20.72836 -18.38507 -17.13250 -16.86107 -16.69279 -16.55307 -15.97392 -15.91301 -15.54513 -15.15628 -14.93860 -14.44432 -14.24071 -14.22314 -14.12016 -13.83328 -13.55322 -13.26818 -13.04949 -12.99827 -12.84817 -12.60358 -12.50918 -12.44955 -12.24661 -12.07198 -11.95875 -11.92559 -11.82188 -11.77892 -11.45945 -11.42207 -11.26890 -11.20764 -10.58883 -9.71570 -9.38272 -8.84480 -8.18557 -6.27908 0.48760 0.59356 1.39278 1.42121 1.49916 2.40003 2.85572 3.13574 3.54859 3.85641 3.93079 4.01693 4.05430 4.08750 4.20108 4.21731 4.32186 4.33456 4.42316 4.48993 4.58248 4.61340 4.71963 4.73383 4.82462 4.85538 4.90200 4.92622 4.94232 4.98952 5.06985 5.12057 5.16931 5.22351 5.23895 5.25898 5.33144 5.35589 5.38039 5.46501 5.50724 5.53270 5.61143 5.68505 5.80169 5.85012 6.08469 6.20681 6.38659 6.66887 6.88349 7.41112 8.91542 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.003563 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.066325 B = 7857.420316 C = 8804.795134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.071 3.929 5 N -0.538 5.538 6 C 0.206 3.794 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.963 3.037 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.090 3.910 16 C -0.083 4.083 17 C -0.113 4.113 18 C -0.123 4.123 19 C -0.089 4.089 20 C -0.075 4.075 21 C -0.116 4.116 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.077 0.923 34 H -0.019 1.019 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.140 0.860 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -8.959 20.626 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.184 4.184 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.080 3.920 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.788 3.212 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.195 1.195 15 C -0.038 4.038 16 C -0.083 4.083 17 C -0.132 4.132 18 C -0.141 4.141 19 C -0.089 4.089 20 C -0.112 4.112 21 C -0.154 4.154 22 C -0.208 4.208 23 C -0.139 4.139 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.095 0.905 34 H -0.001 1.001 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.158 0.842 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.846 -8.842 20.474 22.483 hybrid contribution -0.764 0.460 -1.469 1.718 sum 2.082 -8.382 19.006 20.876 Atomic orbital electron populations 1.21743 0.95226 1.02140 1.01345 1.21398 0.96382 0.95237 1.02089 1.22095 0.97681 0.98160 1.00501 1.22004 0.92561 0.90028 1.01109 1.62262 1.59625 1.02869 1.01267 1.19409 0.92890 0.92087 0.87610 1.21369 1.22929 1.20094 0.91185 0.92469 1.25834 0.95683 0.95511 1.02346 1.70074 1.33313 1.29066 1.24955 0.85529 0.78833 0.78699 0.78141 1.19327 1.20805 1.19499 1.21013 0.96735 0.97397 0.88613 1.19756 0.95727 0.97146 0.95676 1.21108 0.94587 1.00493 0.97026 1.21188 1.00453 0.96674 0.95738 1.20129 0.95147 0.96124 0.97503 1.20637 0.99960 0.99499 0.91115 1.21481 1.00560 0.99607 0.93755 1.21774 1.00687 1.00937 0.97385 1.21195 0.95296 1.00557 0.96803 1.21143 1.00351 0.95714 0.96305 0.91141 0.92317 0.94311 0.92896 0.90517 0.92171 0.94634 0.92867 0.90500 1.00117 0.98757 0.92791 0.94536 0.91979 0.86782 0.84714 0.90201 0.90523 0.92457 0.92232 0.92369 0.92349 0.92217 0.84232 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.11 -3.25 5.93 30.59 0.18 -3.07 16 3 C -0.15 -5.27 4.46 30.59 0.14 -5.13 16 4 C 0.07 2.81 4.79 86.30 0.41 3.23 16 5 N -0.54 -23.95 4.69 -905.36 -4.25 -28.20 16 6 C 0.21 11.17 4.49 85.56 0.38 11.55 16 7 C -0.52 -29.89 8.40 25.60 0.22 -29.67 16 8 H 0.06 3.28 7.29 -2.91 -0.02 3.26 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 11 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 C 0.09 3.41 4.93 85.56 0.42 3.83 16 16 C -0.08 -2.64 4.89 -19.87 -0.10 -2.74 16 17 C -0.11 -3.40 9.70 22.27 0.22 -3.19 16 18 C -0.12 -3.01 9.70 22.27 0.22 -2.79 16 19 C -0.09 -1.94 5.13 -19.87 -0.10 -2.04 16 20 C -0.07 -1.18 5.35 29.85 0.16 -1.02 16 21 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 22 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 23 C -0.12 -2.76 9.70 22.27 0.22 -2.54 16 24 C -0.12 -3.20 7.91 22.27 0.18 -3.02 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.04 5.72 -2.39 -0.01 2.03 16 31 H 0.03 1.58 6.35 -2.39 -0.02 1.56 16 32 H 0.05 2.36 6.94 -2.39 -0.02 2.34 16 33 H 0.08 2.71 5.93 -2.39 -0.01 2.70 16 34 H -0.02 -1.09 6.04 -2.39 -0.01 -1.10 16 35 H -0.01 -0.33 7.93 -2.39 -0.02 -0.35 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.04 1.36 6.03 -2.39 -0.01 1.34 16 38 H 0.06 2.43 7.88 -2.39 -0.02 2.41 16 39 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 41 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 42 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 49 H 0.12 3.17 7.31 -2.91 -0.02 3.14 16 Total: -1.00 -64.47 382.91 3.55 -60.92 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.88 Total: 18.06 kcal Atomic # 6 Polarization: -45.98 SS G_CDS: 4.61 Total: -41.38 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -3.96 Total: -84.77 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.47 3.55 -60.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142364078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.778 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds