Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00518 * 2 1 4 4 H 1.48504 * 109.46925 * 269.99958 * 3 2 1 5 5 H 1.48510 * 109.46880 * 29.99310 * 3 2 1 6 6 H 1.48495 * 109.47670 * 149.99516 * 3 2 1 7 7 C 1.37883 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99785 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46984 * 180.02562 * 9 7 2 11 11 O 1.21303 * 120.00286 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99773 * 180.27952 * 10 9 7 13 13 C 1.40456 * 120.00082 * 174.66352 * 12 10 9 14 14 C 1.34112 * 122.83076 * 185.05329 * 13 12 10 15 15 S 1.76182 * 107.94888 * 179.90846 * 14 13 12 16 16 C 1.70952 * 90.35849 * 0.29452 * 15 14 13 17 17 Br 1.89099 * 124.85744 * 179.85150 * 16 15 14 18 18 N 1.29158 * 110.28376 * 359.82439 * 16 15 14 19 19 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47262 * 59.99473 * 9 7 2 21 21 H 1.09000 * 109.47066 * 299.99780 * 9 7 2 22 22 H 0.96996 * 120.00037 * 354.65189 * 12 10 9 23 23 H 1.08006 * 126.02279 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 8 3.4228 -3.4230 0.0022 12 7 1.7809 -4.9153 -0.0037 13 6 2.6891 -5.9809 -0.1156 14 6 2.2998 -7.2595 -0.2261 15 16 3.7458 -8.2591 -0.3434 16 6 4.7309 -6.8670 -0.2243 17 35 6.6217 -6.8756 -0.2490 18 7 3.9988 -5.8085 -0.1156 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 0.8304 -5.0939 0.0699 23 1 1.2796 -7.6138 -0.2415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189506.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = 21.727134 kcal Electronic energy + Delta-G solvation = -12888.801386 eV Core-core repulsion = 10296.866204 eV Total energy + Delta-G solvation = -2591.935182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.37519 -38.08483 -34.11321 -32.98532 -31.78981 -29.53686 -28.58186 -24.91350 -23.67593 -20.73180 -20.10366 -17.93442 -16.74493 -16.32907 -15.34542 -15.18467 -14.98758 -14.38032 -13.93139 -13.52306 -12.92953 -12.19706 -11.95590 -11.69068 -11.16223 -10.81979 -10.71859 -10.67762 -10.03968 -10.00817 -9.74510 -9.50774 -9.33969 -8.68739 -8.47972 -7.99229 -6.10835 -4.10785 0.44791 0.63557 1.46283 1.49862 2.66074 3.33697 3.38670 3.42507 3.51010 3.76293 4.44278 4.72927 5.13997 5.27946 5.41219 6.06602 6.76790 7.05808 7.21366 7.26464 7.89819 7.96127 8.29356 8.99891 9.04052 9.54673 11.01448 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.028605 B = 0.004452 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.616869 B = 6287.331380 C = 7247.193801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.076 0.924 9 C 0.011 3.989 10 C 0.503 3.497 11 O -0.481 6.481 12 N -0.663 5.663 13 C 0.329 3.671 14 C -0.317 4.317 15 S 0.186 5.814 16 C 0.038 3.962 17 Br 0.052 6.948 18 N -0.413 5.413 19 H 0.263 0.737 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.417 0.583 23 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 -20.183 -0.731 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.028 4.028 10 C 0.292 3.708 11 O -0.349 6.349 12 N -0.314 5.314 13 C 0.103 3.897 14 C -0.462 4.462 15 S 0.432 5.568 16 C -0.320 4.320 17 Br 0.133 6.867 18 N -0.132 5.132 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.254 0.746 23 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.718 -20.253 -0.798 22.064 hybrid contribution -1.213 1.552 0.110 1.973 sum 7.505 -18.701 -0.688 20.163 Atomic orbital electron populations 1.69950 1.06054 1.27071 1.50889 1.24998 0.94937 0.99553 0.95013 0.86395 0.79870 0.82417 0.78238 1.20543 1.21202 1.19588 1.21143 0.94313 0.88888 1.50563 0.90559 1.19274 0.93903 0.89857 0.99807 1.22524 0.91920 0.82492 0.73889 1.90670 1.17409 1.83088 1.43768 1.44291 1.08759 1.04217 1.74087 1.17470 0.86277 0.87589 0.98364 1.26316 1.04059 0.94643 1.21189 1.83692 0.94943 1.10017 1.68112 1.28028 0.99213 0.94368 1.10374 1.96823 0.94136 1.98304 1.97455 1.65979 1.03764 1.29521 1.13934 0.92803 0.93019 0.93096 0.74594 0.79779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.35 14 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 14 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 14 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 14 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 14 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 14 7 C -0.51 -14.75 8.92 -34.44 -0.31 -15.06 14 8 H 0.08 2.32 6.75 -52.49 -0.35 1.96 14 9 C 0.01 0.28 5.46 -29.04 -0.16 0.12 14 10 C 0.50 11.58 7.79 -10.98 -0.09 11.50 14 11 O -0.48 -12.90 13.98 5.54 0.08 -12.82 14 12 N -0.66 -11.72 5.45 -12.35 -0.07 -11.79 14 13 C 0.33 5.59 7.36 -155.62 -1.15 4.44 14 14 C -0.32 -3.91 11.30 29.28 0.33 -3.58 14 15 S 0.19 2.05 23.21 -107.50 -2.50 -0.44 14 16 C 0.04 0.57 7.89 51.64 0.41 0.98 14 17 Br 0.05 0.67 34.13 -68.01 -2.32 -1.65 14 18 N -0.41 -7.88 8.46 -13.07 -0.11 -7.99 14 19 H 0.26 7.20 8.31 -40.82 -0.34 6.86 14 20 H 0.05 1.29 8.14 -51.93 -0.42 0.86 14 21 H 0.05 1.26 8.14 -51.93 -0.42 0.84 14 22 H 0.42 5.63 8.78 -40.82 -0.36 5.27 14 23 H 0.18 1.60 8.06 -52.48 -0.42 1.18 14 LS Contribution 251.72 15.07 3.79 3.79 Total: -1.00 -33.73 251.72 -7.58 -41.31 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -1.12 Total: -2.09 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.06 Total: -0.10 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.56 Total: -45.13 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.50 Total: -0.44 kcal Atomic # 35 Polarization: 0.67 SS G_CDS: -2.32 Total: -1.65 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.73 -7.58 -41.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189506.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.038 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds