Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00518 * 2 1 4 4 H 1.48504 * 109.46925 * 269.99958 * 3 2 1 5 5 H 1.48510 * 109.46880 * 29.99310 * 3 2 1 6 6 H 1.48495 * 109.47670 * 149.99516 * 3 2 1 7 7 C 1.37883 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99785 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46984 * 180.02562 * 9 7 2 11 11 O 1.21303 * 120.00286 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99773 * 180.27952 * 10 9 7 13 13 C 1.40456 * 120.00082 * 174.66352 * 12 10 9 14 14 C 1.34112 * 122.83076 * 185.05329 * 13 12 10 15 15 S 1.76182 * 107.94888 * 179.90846 * 14 13 12 16 16 C 1.70952 * 90.35849 * 0.29452 * 15 14 13 17 17 Br 1.89099 * 124.85744 * 179.85150 * 16 15 14 18 18 N 1.29158 * 110.28376 * 359.82439 * 16 15 14 19 19 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47262 * 59.99473 * 9 7 2 21 21 H 1.09000 * 109.47066 * 299.99780 * 9 7 2 22 22 H 0.96996 * 120.00037 * 354.65189 * 12 10 9 23 23 H 1.08006 * 126.02279 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0018 11 8 3.4228 -3.4230 0.0022 12 7 1.7809 -4.9153 -0.0037 13 6 2.6891 -5.9809 -0.1156 14 6 2.2998 -7.2595 -0.2261 15 16 3.7458 -8.2591 -0.3434 16 6 4.7309 -6.8670 -0.2243 17 35 6.6217 -6.8756 -0.2490 18 7 3.9988 -5.8085 -0.1156 19 1 -0.4850 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8903 22 1 0.8304 -5.0939 0.0699 23 1 1.2796 -7.6138 -0.2415 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189506.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = -2.314549 kcal Electronic energy + Delta-G solvation = -12889.843912 eV Core-core repulsion = 10296.866204 eV Total energy + Delta-G solvation = -2592.977707 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 289.947 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67701 -39.67557 -35.58275 -35.12757 -32.89489 -31.22358 -30.05989 -26.35157 -25.40305 -22.30734 -21.32460 -19.24834 -18.42974 -18.19517 -16.73963 -16.67505 -16.53259 -15.98290 -15.53558 -14.78758 -14.50364 -14.21276 -13.38958 -13.06721 -12.79447 -12.71732 -12.47676 -12.07567 -11.72925 -11.48866 -11.31345 -11.01119 -10.64286 -10.53817 -10.33061 -9.18310 -8.28042 -6.34882 -0.61324 -0.36351 0.41305 0.47815 1.31189 1.39316 1.39779 1.52665 2.13678 2.17299 2.42978 3.07770 3.49419 4.10196 4.31299 4.52526 5.02026 5.21431 5.44925 5.70907 5.90722 6.14936 6.72964 6.83099 7.29847 7.43457 8.83932 Molecular weight = 289.95amu Principal moments of inertia in cm(-1) A = 0.028605 B = 0.004452 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.616869 B = 6287.331380 C = 7247.193801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.016 3.984 10 C 0.510 3.490 11 O -0.529 6.529 12 N -0.649 5.649 13 C 0.280 3.720 14 C -0.284 4.284 15 S 0.299 5.701 16 C -0.003 4.003 17 Br 0.056 6.944 18 N -0.473 5.473 19 H 0.268 0.732 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.435 0.565 23 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.206 -22.128 -0.915 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.070 0.930 9 C -0.024 4.024 10 C 0.298 3.702 11 O -0.402 6.402 12 N -0.300 5.300 13 C 0.055 3.945 14 C -0.429 4.429 15 S 0.546 5.454 16 C -0.358 4.358 17 Br 0.136 6.864 18 N -0.194 5.194 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.276 0.724 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 8.051 -22.282 -0.986 23.712 hybrid contribution -1.044 1.906 0.152 2.178 sum 7.008 -20.376 -0.834 21.563 Atomic orbital electron populations 1.70007 1.06955 1.28186 1.50919 1.25729 0.95869 1.02557 0.94389 0.85482 0.78434 0.78750 0.78581 1.19689 1.19584 1.20235 1.21328 0.93578 0.91258 1.51567 0.92996 1.19078 0.93923 0.89905 0.99488 1.21928 0.90593 0.83966 0.73698 1.90642 1.18852 1.84317 1.46407 1.43617 1.09960 1.03068 1.73399 1.17598 0.85927 0.88455 1.02541 1.26970 1.07003 0.93334 1.15554 1.83331 0.91606 1.06047 1.64401 1.28328 0.99977 0.95849 1.11651 1.96796 0.93823 1.98269 1.97493 1.65858 1.05250 1.32387 1.15885 0.92261 0.93216 0.93198 0.72432 0.75630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 13.29 21.45 0.28 -53.17 14 2 C 0.01 0.78 5.46 84.66 0.46 1.25 14 3 Si 0.96 45.80 29.54 68.60 2.03 47.82 14 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 14 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 14 6 H -0.28 -13.36 7.11 99.48 0.71 -12.66 14 7 C -0.54 -32.07 8.92 25.60 0.23 -31.85 14 8 H 0.05 3.29 6.75 -2.91 -0.02 3.28 14 9 C 0.02 0.81 5.46 29.10 0.16 0.97 14 10 C 0.51 24.12 7.79 87.66 0.68 24.81 14 11 O -0.53 -29.63 13.98 -3.10 -0.04 -29.68 14 12 N -0.65 -22.66 5.45 -311.38 -1.70 -24.36 14 13 C 0.28 9.14 7.36 131.49 0.97 10.11 14 14 C -0.28 -5.91 11.30 66.88 0.76 -5.16 14 15 S 0.30 5.46 23.21 -56.49 -1.31 4.15 14 16 C 0.00 -0.09 7.89 130.64 1.03 0.94 14 17 Br 0.06 1.41 34.13 -20.37 -0.70 0.71 14 18 N -0.47 -18.01 8.46 -195.25 -1.65 -19.66 14 19 H 0.27 14.59 8.31 -92.71 -0.77 13.82 14 20 H 0.05 2.53 8.14 -2.39 -0.02 2.51 14 21 H 0.05 2.53 8.14 -2.39 -0.02 2.51 14 22 H 0.44 11.19 8.78 -92.71 -0.81 10.37 14 23 H 0.23 2.62 8.06 -2.91 -0.02 2.59 14 Total: -1.00 -75.58 251.72 1.65 -73.93 By element: Atomic # 1 Polarization: -1.26 SS G_CDS: 0.45 Total: -0.80 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.29 Total: 1.06 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -3.06 Total: -97.19 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.04 Total: -29.68 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -1.31 Total: 4.15 kcal Atomic # 35 Polarization: 1.41 SS G_CDS: -0.70 Total: 0.71 kcal Total: -75.58 1.65 -73.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189506.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.611 kcal (2) G-P(sol) polarization free energy of solvation -75.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds