Wall clock time and date at job start Tue Mar 31 2020 06:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76193 * 100.00159 * 2 1 4 4 N 1.33148 * 120.49463 * 0.23897 * 3 2 1 5 5 C 1.31882 * 120.84564 * 180.24508 * 4 3 2 6 6 Cl 1.73606 * 119.04577 * 179.75186 * 5 4 3 7 7 N 1.31845 * 121.90835 * 359.77432 * 5 4 3 8 8 C 1.33157 * 120.90245 * 359.97438 * 7 5 4 9 9 N 1.38950 * 120.46782 * 179.97438 * 8 7 5 10 10 C 1.32847 * 120.00433 * 0.02562 * 9 8 7 11 11 H 1.08005 * 119.99840 * 0.02562 * 10 9 8 12 12 C 1.46814 * 120.00341 * 179.97438 * 10 9 8 13 13 N 1.29310 * 120.00036 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00400 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47121 * 90.00028 * 14 12 10 16 16 H 1.48497 * 109.47582 * 210.00268 * 14 12 10 17 17 H 1.48504 * 109.46789 * 330.00647 * 14 12 10 18 18 C 1.39040 * 119.05608 * 0.02562 * 8 7 5 19 19 N 1.48026 * 120.86050 * 179.97438 * 18 8 7 20 20 O 1.31700 * 119.99490 * 90.00365 * 19 18 8 21 21 O 1.31699 * 120.00227 * 269.99947 * 19 18 8 22 22 H 1.09004 * 109.46379 * 300.00052 * 1 2 3 23 23 H 1.08994 * 109.47473 * 59.99749 * 1 2 3 24 24 H 1.09001 * 109.47336 * 180.02562 * 1 2 3 25 25 H 0.96997 * 119.99470 * 180.02562 * 9 8 7 26 26 H 0.97001 * 120.00434 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1035 2.5998 0.0048 5 6 1.3246 3.9000 0.0000 6 17 -0.0304 4.9853 0.0000 7 7 2.5448 4.3994 -0.0053 8 6 3.6105 3.6010 -0.0054 9 7 4.8924 4.1371 -0.0115 10 6 5.0614 5.4547 -0.0167 11 1 4.2024 6.1094 -0.0158 12 6 6.4159 6.0211 -0.0226 13 7 7.4444 5.2374 -0.0232 14 14 6.6536 7.8739 -0.0293 15 1 6.7209 8.3694 1.3691 16 1 7.9171 8.2085 -0.7342 17 1 5.5118 8.5169 -0.7278 18 6 3.4222 2.2234 -0.0005 19 7 4.5783 1.2990 -0.0010 20 8 5.0960 0.8915 1.1394 21 8 5.0893 0.8842 -1.1418 22 1 -0.3632 0.5139 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 5.6639 3.5491 -0.0120 26 1 8.3394 5.6115 -0.0275 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533858.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:15 Heat of formation + Delta-G solvation = 57.799484 kcal Electronic energy + Delta-G solvation = -18377.405973 eV Core-core repulsion = 15033.755443 eV Total energy + Delta-G solvation = -3343.650530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.003 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92542 -39.74645 -38.55808 -37.77726 -35.49600 -35.23896 -33.92192 -32.52304 -29.87009 -27.89346 -27.48209 -24.64546 -24.28275 -21.15993 -20.24944 -19.50656 -19.36828 -18.73741 -17.79694 -17.08692 -16.45965 -16.39826 -16.16407 -15.72650 -15.04114 -14.61988 -14.18993 -14.14737 -13.48747 -13.29206 -13.10794 -12.91933 -12.87280 -12.60816 -12.51459 -12.16314 -12.05448 -11.89335 -11.79803 -11.67455 -11.22430 -10.34935 -10.25607 -9.33531 -9.12079 -6.17024 -1.38165 -0.52294 -0.01043 0.01487 0.07868 0.54067 1.11565 1.29387 1.38454 1.48683 1.95909 2.19866 2.26479 2.67118 3.49470 3.59790 4.00338 4.32110 4.33482 4.37393 4.50037 4.62649 4.93325 5.19379 5.52961 5.67193 5.86267 6.43080 6.60044 7.10652 7.74971 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.006619 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.118289 B = 4229.084153 C = 5834.798171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.067 6.067 3 C 0.267 3.733 4 N -0.598 5.598 5 C 0.417 3.583 6 Cl 0.038 6.962 7 N -0.547 5.547 8 C 0.275 3.725 9 N -0.424 5.424 10 C -0.316 4.316 11 H 0.140 0.860 12 C 0.012 3.988 13 N -0.816 5.816 14 Si 1.026 2.974 15 H -0.254 1.254 16 H -0.256 1.256 17 H -0.249 1.249 18 C -0.247 4.247 19 N 0.010 4.990 20 O -0.173 6.173 21 O -0.173 6.173 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.139 0.861 25 H 0.403 0.597 26 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 -0.200 -0.014 8.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S 0.171 5.829 3 C 0.012 3.988 4 N -0.335 5.335 5 C 0.115 3.885 6 Cl 0.066 6.934 7 N -0.278 5.278 8 C 0.028 3.972 9 N -0.014 5.014 10 C -0.452 4.452 11 H 0.158 0.842 12 C -0.208 4.208 13 N -0.441 5.441 14 Si 0.842 3.158 15 H -0.178 1.178 16 H -0.180 1.180 17 H -0.172 1.172 18 C -0.355 4.355 19 N 0.500 4.500 20 O -0.375 6.375 21 O -0.375 6.375 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.157 0.843 25 H 0.239 0.761 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.457 0.137 -0.018 8.458 hybrid contribution 0.921 0.582 0.007 1.089 sum -7.536 0.719 -0.011 7.571 Atomic orbital electron populations 1.23589 0.88848 1.08287 1.07744 1.86069 1.13556 0.93933 1.89375 1.22687 0.86899 1.00796 0.88445 1.68380 1.29454 1.01306 1.34403 1.22644 0.87222 0.86898 0.91692 1.98371 1.38470 1.60524 1.96043 1.67097 0.96828 1.37569 1.26294 1.16442 0.86098 0.83849 1.10779 1.40303 1.03546 1.09068 1.48439 1.21951 0.95316 0.82081 1.45848 0.84228 1.28646 0.92462 1.08089 0.91609 1.68662 1.02166 1.42564 1.30687 0.84466 0.79817 0.71102 0.80418 1.17777 1.18015 1.17192 1.19850 0.84087 0.87510 1.44092 1.50116 1.00591 0.98041 1.01213 1.96193 1.64334 1.61008 1.15969 1.96193 1.64703 1.60675 1.15920 0.88617 0.88624 0.84338 0.76144 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.68 113.37 1.10 -1.50 15 2 S -0.07 -2.23 22.24 -56.49 -1.26 -3.49 15 3 C 0.27 11.16 7.00 84.78 0.59 11.76 15 4 N -0.60 -23.68 9.26 -187.08 -1.73 -25.42 15 5 C 0.42 17.08 8.18 180.84 1.48 18.56 15 6 Cl 0.04 1.22 29.26 -2.72 -0.08 1.14 15 7 N -0.55 -25.28 9.16 -188.38 -1.72 -27.00 15 8 C 0.28 13.54 7.44 132.83 0.99 14.53 15 9 N -0.42 -21.14 5.29 -184.88 -0.98 -22.12 15 10 C -0.32 -14.91 9.96 86.78 0.86 -14.05 15 11 H 0.14 6.55 7.14 -2.91 -0.02 6.53 15 12 C 0.01 0.52 5.70 87.31 0.50 1.02 15 13 N -0.82 -36.12 13.09 23.26 0.30 -35.81 15 14 Si 1.03 31.75 29.65 68.60 2.03 33.79 15 15 H -0.25 -7.59 7.11 99.48 0.71 -6.88 15 16 H -0.26 -7.38 7.11 99.48 0.71 -6.67 15 17 H -0.25 -7.61 7.11 99.48 0.71 -6.90 15 18 C -0.25 -11.75 6.36 36.86 0.23 -11.51 15 19 N 0.01 0.47 3.54 -45.31 -0.16 0.31 15 20 O -0.17 -8.35 19.97 3.51 0.07 -8.28 15 21 O -0.17 -8.34 19.97 3.52 0.07 -8.27 15 22 H 0.09 2.15 8.13 -2.39 -0.02 2.14 15 23 H 0.09 2.15 8.14 -2.40 -0.02 2.13 15 24 H 0.14 2.06 8.14 -2.39 -0.02 2.05 15 25 H 0.40 20.77 7.31 -92.71 -0.68 20.09 15 26 H 0.32 12.35 8.26 -92.71 -0.77 11.59 15 Total: -1.00 -55.19 284.18 2.90 -52.29 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.60 Total: 24.06 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 5.75 Total: 18.80 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.29 Total: -110.05 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.14 Total: -16.55 kcal Atomic # 14 Polarization: 31.75 SS G_CDS: 2.03 Total: 33.79 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -1.26 Total: -3.49 kcal Atomic # 17 Polarization: 1.22 SS G_CDS: -0.08 Total: 1.14 kcal Total: -55.19 2.90 -52.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533858.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.094 kcal (2) G-P(sol) polarization free energy of solvation -55.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds