Wall clock time and date at job start Tue Mar 31 2020 06:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34792 * 116.99993 * 2 1 4 4 O 1.21538 * 119.99569 * 0.02562 * 3 2 1 5 5 C 1.47164 * 119.99646 * 179.97438 * 3 2 1 6 6 C 1.40266 * 120.61918 * 270.00093 * 5 3 2 7 7 Cl 1.73599 * 120.82661 * 0.02562 * 6 5 3 8 8 C 1.38424 * 118.34484 * 179.97438 * 6 5 3 9 9 C 1.38581 * 119.49191 * 0.27715 * 8 6 5 10 10 Cl 1.73599 * 119.38046 * 179.72009 * 9 8 6 11 11 N 1.31929 * 121.22929 * 359.40297 * 9 8 6 12 12 C 1.32484 * 121.80984 * 0.63159 * 11 9 8 13 13 N 1.38177 * 119.82046 * 179.68226 * 12 11 9 14 14 C 1.36884 * 120.00459 * 359.97438 * 13 12 11 15 15 H 1.08004 * 119.99975 * 0.02562 * 14 13 12 16 16 C 1.38878 * 120.00223 * 179.97438 * 14 13 12 17 17 N 1.31502 * 119.99731 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 119.99871 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47386 * 60.00412 * 18 16 14 20 20 H 1.48502 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47219 * 299.99776 * 18 16 14 22 22 H 1.09006 * 109.46818 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47389 * 299.99959 * 1 2 3 24 24 H 1.09002 * 109.46900 * 60.00411 * 1 2 3 25 25 H 1.08002 * 120.24973 * 179.97438 * 8 6 5 26 26 H 0.97002 * 119.99661 * 179.97438 * 13 12 11 27 27 H 0.97008 * 120.00237 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2203 0.0005 5 6 3.5336 1.2779 0.0006 6 6 4.2466 1.3155 1.2079 7 17 3.4174 1.2717 2.7324 8 6 5.6279 1.3873 1.1535 9 6 6.2611 1.4255 -0.0786 10 17 7.9931 1.5228 -0.1434 11 7 5.5725 1.3830 -1.2031 12 6 4.2494 1.3146 -1.2096 13 7 3.5691 1.2788 -2.4118 14 6 4.2620 1.3144 -3.5917 15 1 5.3406 1.3701 -3.5831 16 6 3.5783 1.2778 -4.8000 17 7 2.2651 1.2095 -4.8104 18 14 4.5240 1.3257 -6.4101 19 1 5.4401 0.1592 -6.4810 20 1 3.5694 1.2758 -7.5465 21 1 5.3142 2.5810 -6.4829 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 6.2074 1.4182 2.0644 26 1 2.6004 1.2284 -2.4195 27 1 1.7874 1.1843 -5.6544 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181995.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:12 Heat of formation + Delta-G solvation = -60.979697 kcal Electronic energy + Delta-G solvation = -18449.814985 eV Core-core repulsion = 15066.677345 eV Total energy + Delta-G solvation = -3383.137640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.001 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24280 -38.97982 -36.56961 -36.41056 -35.88541 -35.36290 -32.44386 -31.67603 -29.37686 -27.35833 -25.31460 -24.02207 -22.00838 -20.81146 -18.58182 -17.72341 -17.33690 -16.55240 -16.30138 -15.50648 -15.01535 -14.62216 -14.14705 -13.92058 -13.68662 -13.47755 -12.73326 -12.41455 -12.20515 -12.04484 -11.96953 -11.76768 -11.25090 -11.07503 -10.86223 -10.72447 -10.60499 -10.42209 -10.26274 -10.19746 -9.16047 -8.95673 -8.84972 -7.54081 -7.02433 -4.17381 1.39254 1.85477 2.00464 2.47139 2.58747 3.00138 3.01604 3.03631 3.23299 3.75017 4.11938 4.41247 4.81540 5.28244 5.36387 5.44888 5.60612 5.65332 5.76280 5.84081 6.11547 6.37529 6.69468 6.78477 7.02122 7.32939 8.11475 8.14767 8.42627 8.72870 9.10952 10.10555 Molecular weight = 290.00amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.007623 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.552253 B = 3672.057277 C = 5730.698682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.351 6.351 3 C 0.535 3.465 4 O -0.498 6.498 5 C -0.285 4.285 6 C 0.123 3.877 7 Cl -0.064 7.064 8 C -0.298 4.298 9 C 0.282 3.718 10 Cl -0.047 7.047 11 N -0.526 5.526 12 C 0.381 3.619 13 N -0.482 5.482 14 C -0.286 4.286 15 H 0.127 0.873 16 C 0.026 3.974 17 N -0.865 5.865 18 Si 0.948 3.052 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.265 1.265 22 H 0.098 0.902 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.139 0.861 26 H 0.410 0.590 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 -2.254 7.504 7.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.377 3.623 4 O -0.385 6.385 5 C -0.299 4.299 6 C 0.089 3.911 7 Cl -0.035 7.035 8 C -0.327 4.327 9 C 0.103 3.897 10 Cl -0.019 7.019 11 N -0.247 5.247 12 C 0.134 3.866 13 N -0.080 5.080 14 C -0.416 4.416 15 H 0.144 0.856 16 C -0.182 4.182 17 N -0.498 5.498 18 Si 0.772 3.228 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.189 1.189 22 H 0.116 0.884 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.157 0.843 26 H 0.248 0.752 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.328 -1.952 6.219 6.652 hybrid contribution -0.696 0.021 0.113 0.706 sum 0.631 -1.931 6.332 6.650 Atomic orbital electron populations 1.23247 0.77123 1.03358 1.02399 1.86744 1.22733 1.33289 1.83951 1.20841 0.88563 0.81353 0.71504 1.90818 1.66889 1.36157 1.44606 1.18361 0.89375 1.29311 0.92829 1.20342 0.91454 0.94852 0.84444 1.98350 1.78625 1.96413 1.30124 1.20454 0.91540 1.23182 0.97502 1.20925 0.85854 0.94089 0.88848 1.98358 1.08727 1.96100 1.98710 1.66252 1.06251 1.23179 1.28973 1.17025 0.86219 0.99220 0.84171 1.41068 1.08841 1.55603 1.02449 1.20262 0.94587 1.45353 0.81421 0.85578 1.25693 0.95940 0.95529 1.01068 1.69647 1.06902 1.43211 1.30015 0.85614 0.78872 0.79931 0.78346 1.18924 1.20348 1.18945 0.88386 0.92202 0.91756 0.84332 0.75233 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 101.05 1.07 1.54 15 2 O -0.35 -6.66 10.58 -40.74 -0.43 -7.09 15 3 C 0.53 11.33 5.31 34.35 0.18 11.51 15 4 O -0.50 -11.31 16.90 -19.29 -0.33 -11.64 15 5 C -0.29 -6.16 5.79 -104.60 -0.61 -6.76 15 6 C 0.12 2.34 6.40 -38.75 -0.25 2.10 15 7 Cl -0.06 -1.05 28.19 -51.86 -1.46 -2.51 15 8 C -0.30 -5.31 9.67 -39.39 -0.38 -5.69 15 9 C 0.28 5.43 7.27 -17.38 -0.13 5.31 15 10 Cl -0.05 -0.76 29.09 -51.86 -1.51 -2.27 15 11 N -0.53 -11.76 9.04 -9.29 -0.08 -11.84 15 12 C 0.38 8.87 7.45 -155.17 -1.16 7.71 15 13 N -0.48 -11.88 5.33 -10.95 -0.06 -11.94 15 14 C -0.29 -7.13 9.70 -15.06 -0.15 -7.27 15 15 H 0.13 3.13 7.07 -52.48 -0.37 2.76 15 16 C 0.03 0.62 5.50 -17.46 -0.10 0.52 15 17 N -0.87 -21.56 13.05 55.49 0.72 -20.84 15 18 Si 0.95 18.69 29.55 -169.99 -5.02 13.66 15 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 20 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 15 22 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.14 2.07 8.06 -52.49 -0.42 1.65 15 26 H 0.41 10.30 6.72 -40.82 -0.27 10.03 15 27 H 0.29 6.65 8.31 -40.82 -0.34 6.31 15 LS Contribution 285.28 15.07 4.30 4.30 Total: -1.00 -26.55 285.28 -6.85 -33.40 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -1.47 Total: 7.81 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -1.51 Total: 8.96 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.58 Total: -44.62 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.76 Total: -18.73 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -2.97 Total: -4.78 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.55 -6.85 -33.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181995.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.584 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds