Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.46974 * 2 1 4 4 C 1.46896 * 111.00224 * 288.18130 * 3 2 1 5 5 C 1.50701 * 109.47269 * 160.36077 * 4 3 2 6 6 H 1.07999 * 120.00227 * 4.64209 * 5 4 3 7 7 C 1.37879 * 119.99840 * 184.64958 * 5 4 3 8 8 N 1.31518 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00072 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47143 * 59.99745 * 9 7 5 11 11 H 1.48495 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47058 * 300.00065 * 9 7 5 13 13 C 1.46904 * 110.99922 * 164.22638 * 3 2 1 14 14 C 1.50705 * 109.47251 * 293.95537 * 13 3 2 15 15 C 1.38234 * 119.99369 * 269.72040 * 14 13 3 16 16 C 1.38243 * 119.99454 * 179.76438 * 15 14 13 17 17 C 1.38239 * 119.99807 * 0.51432 * 16 15 14 18 18 C 1.50700 * 119.99761 * 179.72385 * 17 16 15 19 19 C 1.53003 * 109.47075 * 120.02181 * 18 17 16 20 20 C 1.53000 * 109.47053 * 240.01730 * 18 17 16 21 21 C 1.52997 * 109.47427 * 0.02562 * 18 17 16 22 22 C 1.52992 * 109.47520 * 180.02562 * 21 18 17 23 23 C 1.38236 * 120.00001 * 359.74227 * 17 16 15 24 24 C 1.38226 * 119.99898 * 89.99800 * 14 13 3 25 25 H 1.09004 * 109.47130 * 299.63484 * 1 2 3 26 26 H 1.08999 * 109.47306 * 59.63382 * 1 2 3 27 27 H 1.08999 * 109.47162 * 179.63518 * 1 2 3 28 28 H 1.08998 * 109.47028 * 239.99721 * 2 1 3 29 29 H 1.09006 * 109.46873 * 119.99839 * 2 1 3 30 30 H 1.09003 * 109.46948 * 280.35547 * 4 3 2 31 31 H 1.08997 * 109.47101 * 40.35533 * 4 3 2 32 32 H 0.97001 * 119.99902 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47044 * 173.95073 * 13 3 2 34 34 H 1.09001 * 109.47036 * 53.95412 * 13 3 2 35 35 H 1.07993 * 120.00577 * 0.02562 * 15 14 13 36 36 H 1.07996 * 119.99784 * 180.23531 * 16 15 14 37 37 H 1.08998 * 109.47088 * 59.99506 * 19 18 17 38 38 H 1.08997 * 109.47325 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.46729 * 299.99699 * 19 18 17 40 40 H 1.09003 * 109.46602 * 59.99882 * 20 18 17 41 41 H 1.08994 * 109.47475 * 180.02562 * 20 18 17 42 42 H 1.08998 * 109.47138 * 300.00511 * 20 18 17 43 43 H 1.09003 * 109.46848 * 300.00497 * 21 18 17 44 44 H 1.09004 * 109.47328 * 59.99718 * 21 18 17 45 45 H 1.09003 * 109.47395 * 300.00076 * 22 21 18 46 46 H 1.09004 * 109.47121 * 59.99504 * 22 21 18 47 47 H 1.08998 * 109.47659 * 179.97438 * 22 21 18 48 48 H 1.07998 * 119.99978 * 179.97438 * 23 17 16 49 49 H 1.07998 * 120.00571 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7917 2.0240 -1.3029 5 6 1.8434 3.5217 -1.1438 6 1 2.1012 3.9547 -0.1886 7 6 1.5616 4.3391 -2.2178 8 7 1.2480 3.8118 -3.3811 9 14 1.6250 6.1956 -2.0205 10 1 2.9923 6.6031 -1.6085 11 1 1.2845 6.8426 -3.3129 12 1 0.6494 6.6167 -0.9832 13 6 3.4394 1.4414 0.3728 14 6 3.6003 1.0042 1.8061 15 6 3.5399 1.9374 2.8241 16 6 3.6826 1.5358 4.1392 17 6 3.8962 0.2025 4.4353 18 6 4.0579 -0.2345 5.8685 19 6 2.9635 -1.2441 6.2205 20 6 5.4303 -0.8856 6.0514 21 6 3.9440 0.9825 6.7887 22 6 4.1088 0.5390 8.2437 23 6 3.9618 -0.7299 3.4168 24 6 3.8138 -0.3289 2.1022 25 1 -0.3633 0.5082 0.8933 26 1 -0.3634 0.5195 -0.8867 27 1 -0.3633 -1.0276 -0.0065 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5639 1.7062 -2.0035 31 1 0.8130 1.7327 -1.6842 32 1 1.0501 4.3869 -4.1367 33 1 3.8041 2.4625 0.2612 34 1 4.0120 0.7783 -0.2757 35 1 3.3771 2.9796 2.5924 36 1 3.6316 2.2643 4.9348 37 1 3.0445 -2.1111 5.5649 38 1 3.0807 -1.5605 7.2569 39 1 1.9857 -0.7801 6.0902 40 1 6.2100 -0.1664 5.8005 41 1 5.5471 -1.2021 7.0878 42 1 5.5113 -1.7526 5.3958 43 1 4.7236 1.7019 6.5379 44 1 2.9662 1.4464 6.6584 45 1 3.3295 -0.1805 8.4947 46 1 5.0868 0.0754 8.3736 47 1 4.0281 1.4061 8.8992 48 1 4.1291 -1.7714 3.6482 49 1 3.8659 -1.0573 1.3065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167557968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = 4.182935 kcal Electronic energy + Delta-G solvation = -23387.148441 eV Core-core repulsion = 20313.151533 eV Total energy + Delta-G solvation = -3073.996907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94083 -37.70445 -36.05444 -32.63078 -31.73201 -30.86279 -30.17725 -29.15399 -27.40739 -26.87415 -25.09935 -23.96243 -22.62739 -21.78234 -21.27619 -19.62526 -18.76422 -16.53082 -16.41334 -15.19817 -15.12212 -14.89051 -14.79874 -14.33875 -14.12752 -13.79096 -13.59549 -13.45097 -13.33332 -13.17735 -12.66868 -12.20766 -12.18087 -12.12207 -11.94516 -11.66602 -11.56574 -11.31846 -11.22632 -11.14916 -10.98961 -10.79343 -10.76040 -10.74334 -10.52050 -10.41258 -10.24869 -10.18228 -9.60749 -9.22731 -8.57205 -8.39406 -8.20094 -7.19202 -5.99344 -4.00294 1.65039 1.72361 3.35235 3.39199 3.42236 4.02247 4.45681 4.53768 4.59905 4.81970 5.09122 5.15613 5.20551 5.21733 5.26749 5.28637 5.36743 5.38574 5.44249 5.53748 5.64329 5.74244 5.76539 5.77295 5.79664 5.86056 5.87351 5.91828 5.94966 6.02643 6.12990 6.16238 6.23765 6.24842 6.29439 6.38572 6.40806 6.55538 6.65273 6.74776 6.86279 6.86553 7.07382 7.28595 7.34096 7.37529 7.85487 8.16261 8.25402 8.58795 9.06886 9.63463 11.11250 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.003530 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.992792 B = 7930.891512 C = 8656.725801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.528 5.528 4 C 0.191 3.809 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.097 3.903 14 C -0.063 4.063 15 C -0.096 4.096 16 C -0.124 4.124 17 C -0.083 4.083 18 C -0.022 4.022 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.116 4.116 22 C -0.156 4.156 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.019 0.981 29 H 0.064 0.936 30 H -0.012 1.012 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.113 0.887 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -10.160 18.940 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.253 5.253 4 C 0.066 3.934 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.031 4.031 14 C -0.063 4.063 15 C -0.114 4.114 16 C -0.141 4.141 17 C -0.083 4.083 18 C -0.022 4.022 19 C -0.196 4.196 20 C -0.196 4.196 21 C -0.153 4.153 22 C -0.213 4.213 23 C -0.137 4.137 24 C -0.135 4.135 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.006 0.994 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.045 0.955 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.131 0.869 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.849 -9.844 19.078 22.250 hybrid contribution 0.382 0.573 -0.781 1.041 sum 6.230 -9.270 18.297 21.437 Atomic orbital electron populations 1.21727 0.95647 0.99781 1.02790 1.22101 0.95963 0.91099 0.99155 1.62175 1.14489 1.14295 1.34329 1.19800 0.96476 0.94209 0.82938 1.21134 1.46034 0.90684 0.96333 0.92008 1.24983 0.95534 0.98891 0.95226 1.69949 1.47684 1.35293 1.01111 0.86582 0.78505 0.85301 0.77152 1.20305 1.21422 1.20191 1.20990 0.90634 1.01617 0.89869 1.20043 0.96988 0.92997 0.96283 1.21089 0.98404 0.99917 0.92001 1.21105 1.01211 0.95366 0.96460 1.19654 1.01020 0.93531 0.94090 1.19442 0.95788 0.95557 0.91383 1.21932 0.98219 0.98442 1.01045 1.21929 0.95804 1.00474 1.01385 1.21662 1.02181 0.97148 0.94335 1.21911 1.01857 1.01233 0.96314 1.20801 1.01826 0.98699 0.92412 1.21016 1.00774 0.95590 0.96123 0.92511 0.92113 0.93801 0.96320 0.91778 0.99449 0.94433 0.92932 0.89300 0.95518 0.85891 0.86199 0.92617 0.92367 0.92480 0.92602 0.92350 0.92627 0.91666 0.91560 0.92475 0.92530 0.92988 0.86903 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.98 37.16 0.37 -2.18 16 2 C 0.05 0.85 5.52 -3.83 -0.02 0.83 16 3 N -0.53 -11.53 4.37 -237.51 -1.04 -12.57 16 4 C 0.19 4.98 4.59 -4.98 -0.02 4.96 16 5 C -0.50 -14.15 8.61 -34.44 -0.30 -14.45 16 6 H 0.06 1.72 7.66 -52.49 -0.40 1.32 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.10 1.89 4.95 -4.97 -0.02 1.87 16 14 C -0.06 -1.05 4.93 -104.63 -0.52 -1.57 16 15 C -0.10 -1.52 9.70 -39.58 -0.38 -1.91 16 16 C -0.12 -1.68 8.98 -39.58 -0.36 -2.04 16 17 C -0.08 -1.03 4.76 -104.62 -0.50 -1.53 16 18 C -0.02 -0.21 0.63 -155.66 -0.10 -0.31 16 19 C -0.14 -1.27 7.93 37.16 0.29 -0.98 16 20 C -0.14 -1.22 7.93 37.16 0.29 -0.92 16 21 C -0.12 -1.04 3.65 -26.74 -0.10 -1.14 16 22 C -0.16 -1.16 9.21 37.15 0.34 -0.82 16 23 C -0.12 -1.54 8.71 -39.58 -0.34 -1.89 16 24 C -0.12 -1.72 7.85 -39.59 -0.31 -2.03 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.21 6.52 -51.93 -0.34 0.87 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 29 H 0.06 1.10 5.14 -51.93 -0.27 0.83 16 30 H -0.01 -0.34 8.00 -51.93 -0.42 -0.76 16 31 H 0.04 1.05 6.23 -51.93 -0.32 0.72 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.87 7.26 -51.93 -0.38 1.49 16 34 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 35 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.12 1.41 5.90 -52.49 -0.31 1.11 16 37 H 0.05 0.50 7.39 -51.93 -0.38 0.12 16 38 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 42 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 43 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 44 H 0.07 0.63 7.51 -51.93 -0.39 0.24 16 45 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 46 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 49 H 0.11 1.58 7.73 -52.49 -0.41 1.18 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -29.57 372.16 -10.08 -39.65 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.60 Total: -0.65 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.76 Total: -22.63 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.30 Total: -38.71 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.57 -10.08 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167557968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.836 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds