Wall clock time and date at job start Tue Mar 31 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46897 * 109.46974 * 2 1 4 4 C 1.46896 * 111.00224 * 288.18130 * 3 2 1 5 5 C 1.50701 * 109.47269 * 160.36077 * 4 3 2 6 6 H 1.07999 * 120.00227 * 4.64209 * 5 4 3 7 7 C 1.37879 * 119.99840 * 184.64958 * 5 4 3 8 8 N 1.31518 * 120.00007 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00072 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47143 * 59.99745 * 9 7 5 11 11 H 1.48495 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47058 * 300.00065 * 9 7 5 13 13 C 1.46904 * 110.99922 * 164.22638 * 3 2 1 14 14 C 1.50705 * 109.47251 * 293.95537 * 13 3 2 15 15 C 1.38234 * 119.99369 * 269.72040 * 14 13 3 16 16 C 1.38243 * 119.99454 * 179.76438 * 15 14 13 17 17 C 1.38239 * 119.99807 * 0.51432 * 16 15 14 18 18 C 1.50700 * 119.99761 * 179.72385 * 17 16 15 19 19 C 1.53003 * 109.47075 * 120.02181 * 18 17 16 20 20 C 1.53000 * 109.47053 * 240.01730 * 18 17 16 21 21 C 1.52997 * 109.47427 * 0.02562 * 18 17 16 22 22 C 1.52992 * 109.47520 * 180.02562 * 21 18 17 23 23 C 1.38236 * 120.00001 * 359.74227 * 17 16 15 24 24 C 1.38226 * 119.99898 * 89.99800 * 14 13 3 25 25 H 1.09004 * 109.47130 * 299.63484 * 1 2 3 26 26 H 1.08999 * 109.47306 * 59.63382 * 1 2 3 27 27 H 1.08999 * 109.47162 * 179.63518 * 1 2 3 28 28 H 1.08998 * 109.47028 * 239.99721 * 2 1 3 29 29 H 1.09006 * 109.46873 * 119.99839 * 2 1 3 30 30 H 1.09003 * 109.46948 * 280.35547 * 4 3 2 31 31 H 1.08997 * 109.47101 * 40.35533 * 4 3 2 32 32 H 0.97001 * 119.99902 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47044 * 173.95073 * 13 3 2 34 34 H 1.09001 * 109.47036 * 53.95412 * 13 3 2 35 35 H 1.07993 * 120.00577 * 0.02562 * 15 14 13 36 36 H 1.07996 * 119.99784 * 180.23531 * 16 15 14 37 37 H 1.08998 * 109.47088 * 59.99506 * 19 18 17 38 38 H 1.08997 * 109.47325 * 179.97438 * 19 18 17 39 39 H 1.09004 * 109.46729 * 299.99699 * 19 18 17 40 40 H 1.09003 * 109.46602 * 59.99882 * 20 18 17 41 41 H 1.08994 * 109.47475 * 180.02562 * 20 18 17 42 42 H 1.08998 * 109.47138 * 300.00511 * 20 18 17 43 43 H 1.09003 * 109.46848 * 300.00497 * 21 18 17 44 44 H 1.09004 * 109.47328 * 59.99718 * 21 18 17 45 45 H 1.09003 * 109.47395 * 300.00076 * 22 21 18 46 46 H 1.09004 * 109.47121 * 59.99504 * 22 21 18 47 47 H 1.08998 * 109.47659 * 179.97438 * 22 21 18 48 48 H 1.07998 * 119.99978 * 179.97438 * 23 17 16 49 49 H 1.07998 * 120.00571 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7917 2.0240 -1.3029 5 6 1.8434 3.5217 -1.1438 6 1 2.1012 3.9547 -0.1886 7 6 1.5616 4.3391 -2.2178 8 7 1.2480 3.8118 -3.3811 9 14 1.6250 6.1956 -2.0205 10 1 2.9923 6.6031 -1.6085 11 1 1.2845 6.8426 -3.3129 12 1 0.6494 6.6167 -0.9832 13 6 3.4394 1.4414 0.3728 14 6 3.6003 1.0042 1.8061 15 6 3.5399 1.9374 2.8241 16 6 3.6826 1.5358 4.1392 17 6 3.8962 0.2025 4.4353 18 6 4.0579 -0.2345 5.8685 19 6 2.9635 -1.2441 6.2205 20 6 5.4303 -0.8856 6.0514 21 6 3.9440 0.9825 6.7887 22 6 4.1088 0.5390 8.2437 23 6 3.9618 -0.7299 3.4168 24 6 3.8138 -0.3289 2.1022 25 1 -0.3633 0.5082 0.8933 26 1 -0.3634 0.5195 -0.8867 27 1 -0.3633 -1.0276 -0.0065 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5639 1.7062 -2.0035 31 1 0.8130 1.7327 -1.6842 32 1 1.0501 4.3869 -4.1367 33 1 3.8041 2.4625 0.2612 34 1 4.0120 0.7783 -0.2757 35 1 3.3771 2.9796 2.5924 36 1 3.6316 2.2643 4.9348 37 1 3.0445 -2.1111 5.5649 38 1 3.0807 -1.5605 7.2569 39 1 1.9857 -0.7801 6.0902 40 1 6.2100 -0.1664 5.8005 41 1 5.5471 -1.2021 7.0878 42 1 5.5113 -1.7526 5.3958 43 1 4.7236 1.7019 6.5379 44 1 2.9662 1.4464 6.6584 45 1 3.3295 -0.1805 8.4947 46 1 5.0868 0.0754 8.3736 47 1 4.0281 1.4061 8.8992 48 1 4.1291 -1.7714 3.6482 49 1 3.8659 -1.0573 1.3065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167557968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:19 Heat of formation + Delta-G solvation = -10.261622 kcal Electronic energy + Delta-G solvation = -23387.774804 eV Core-core repulsion = 20313.151533 eV Total energy + Delta-G solvation = -3074.623270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99238 -39.02138 -37.34453 -34.76288 -32.87174 -31.98990 -31.50537 -30.36289 -28.63102 -28.08228 -26.43842 -25.01958 -24.48813 -22.91676 -22.46640 -21.26891 -19.62565 -18.58150 -17.55227 -16.81922 -16.42350 -16.30286 -15.87034 -15.54443 -15.49776 -15.13281 -14.77362 -14.51603 -14.33933 -14.29676 -14.22648 -13.80090 -13.28374 -13.16003 -12.95953 -12.87467 -12.80458 -12.70334 -12.62227 -12.59410 -12.31012 -12.20154 -12.06804 -11.99476 -11.95441 -11.57188 -11.45214 -11.35568 -11.16950 -11.10888 -10.58868 -9.71053 -9.38999 -8.97996 -8.19260 -6.29114 0.49538 0.58772 1.39802 1.43089 1.50954 2.40202 2.84463 3.12295 3.48802 3.70836 3.81119 3.99793 4.10475 4.12046 4.20327 4.22947 4.38386 4.42302 4.53570 4.57069 4.60232 4.64417 4.67815 4.76188 4.81321 4.85341 4.89961 4.93480 5.02166 5.04231 5.09031 5.15676 5.18621 5.21889 5.22014 5.25220 5.27575 5.31111 5.32679 5.35896 5.52680 5.57026 5.64940 5.68555 5.82431 5.86651 6.09107 6.19426 6.39067 6.64500 6.85685 7.39972 8.91135 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.020969 B = 0.003530 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.992792 B = 7930.891512 C = 8656.725801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.045 3.955 3 N -0.536 5.536 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.103 3.897 14 C -0.083 4.083 15 C -0.113 4.113 16 C -0.124 4.124 17 C -0.075 4.075 18 C -0.021 4.021 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.153 4.153 23 C -0.115 4.115 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.078 0.922 28 H 0.016 0.984 29 H 0.087 0.913 30 H -0.042 1.042 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.140 0.860 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.650 -11.098 21.724 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 N -0.260 5.260 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.025 4.025 14 C -0.083 4.083 15 C -0.131 4.131 16 C -0.142 4.142 17 C -0.075 4.075 18 C -0.021 4.021 19 C -0.195 4.195 20 C -0.194 4.194 21 C -0.155 4.155 22 C -0.210 4.210 23 C -0.132 4.132 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.034 0.966 29 H 0.106 0.894 30 H -0.024 1.024 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.158 0.842 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.330 -10.795 21.882 25.208 hybrid contribution 0.262 0.791 -1.573 1.780 sum 6.592 -10.004 20.309 23.580 Atomic orbital electron populations 1.21689 0.94852 1.01598 1.01219 1.22207 0.96622 0.89454 1.00039 1.62116 1.16272 1.16208 1.31406 1.19439 0.94113 0.93944 0.84452 1.21427 1.46117 0.91905 0.96382 0.92275 1.25887 0.94878 1.04070 0.94740 1.70077 1.48409 1.37185 1.01928 0.85472 0.78971 0.79008 0.77393 1.19289 1.20750 1.19393 1.20862 0.89118 1.00262 0.92213 1.19785 0.99851 0.94357 0.94353 1.21092 0.99624 0.99279 0.93124 1.21289 1.00674 0.96563 0.95687 1.20048 0.98783 0.92868 0.95810 1.19507 0.96870 0.96188 0.89486 1.21932 0.97211 0.98092 1.02300 1.21925 0.94611 1.00270 1.02637 1.21661 1.01652 0.96775 0.95374 1.21888 1.02457 1.01615 0.95035 1.21082 1.00547 1.00124 0.91494 1.21107 1.00645 0.94617 0.97430 0.92769 0.94873 0.90277 0.96622 0.89439 1.02438 0.96746 0.92712 0.91821 0.95655 0.87289 0.84597 0.92299 0.90594 0.93509 0.93249 0.90620 0.92302 0.92033 0.92302 0.91938 0.91786 0.92586 0.84247 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.98 71.98 0.72 -4.15 16 2 C 0.04 1.69 5.52 86.30 0.48 2.17 16 3 N -0.54 -24.27 4.37 -905.35 -3.96 -28.23 16 4 C 0.21 11.37 4.59 85.56 0.39 11.77 16 5 C -0.52 -30.34 8.61 25.60 0.22 -30.12 16 6 H 0.06 3.40 7.66 -2.91 -0.02 3.38 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.10 4.21 4.95 85.56 0.42 4.64 16 14 C -0.08 -2.81 4.93 -19.87 -0.10 -2.91 16 15 C -0.11 -3.63 9.70 22.27 0.22 -3.42 16 16 C -0.12 -3.25 8.98 22.27 0.20 -3.05 16 17 C -0.07 -1.70 4.76 -19.86 -0.09 -1.79 16 18 C -0.02 -0.34 0.63 -52.93 -0.03 -0.37 16 19 C -0.14 -2.07 7.93 71.98 0.57 -1.50 16 20 C -0.14 -1.95 7.93 71.98 0.57 -1.38 16 21 C -0.12 -1.82 3.65 30.59 0.11 -1.71 16 22 C -0.15 -1.82 9.21 71.98 0.66 -1.15 16 23 C -0.11 -2.67 8.71 22.27 0.19 -2.48 16 24 C -0.12 -3.37 7.85 22.27 0.17 -3.19 16 25 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.03 1.35 6.52 -2.39 -0.02 1.33 16 27 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 29 H 0.09 2.92 5.14 -2.38 -0.01 2.90 16 30 H -0.04 -2.50 8.00 -2.39 -0.02 -2.52 16 31 H 0.01 0.86 6.23 -2.39 -0.01 0.84 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 33 H 0.06 2.86 7.26 -2.39 -0.02 2.84 16 34 H 0.03 1.02 8.06 -2.39 -0.02 1.00 16 35 H 0.11 3.72 8.06 -2.91 -0.02 3.69 16 36 H 0.14 3.05 5.90 -2.91 -0.02 3.03 16 37 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 38 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 39 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 42 H 0.06 0.81 7.39 -2.39 -0.02 0.79 16 43 H 0.06 1.00 7.51 -2.39 -0.02 0.98 16 44 H 0.06 1.00 7.51 -2.38 -0.02 0.98 16 45 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 46 H 0.06 0.67 6.43 -2.38 -0.02 0.66 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.14 2.52 7.10 -2.91 -0.02 2.50 16 49 H 0.12 3.20 7.73 -2.91 -0.02 3.18 16 Total: -1.00 -65.40 372.16 4.42 -60.98 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.90 Total: 15.14 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 5.17 Total: -38.07 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -3.67 Total: -85.32 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -65.40 4.42 -60.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167557968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.720 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds