Wall clock time and date at job start Tue Mar 31 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36360 * 120.08576 * 2 1 4 4 C 1.39548 * 120.16402 * 180.25689 * 3 2 1 5 5 N 1.38858 * 119.83798 * 179.75920 * 4 3 2 6 6 C 1.46504 * 119.99508 * 190.20689 * 5 4 3 7 7 C 1.52996 * 109.46897 * 174.48993 * 6 5 4 8 8 C 1.53011 * 109.46996 * 54.49302 * 6 5 4 9 9 C 1.52992 * 109.47145 * 294.49442 * 6 5 4 10 10 C 1.52993 * 109.47272 * 309.68772 * 9 6 5 11 11 C 1.52997 * 109.47461 * 55.41885 * 10 9 6 12 12 C 1.53000 * 109.47664 * 175.42189 * 10 9 6 13 13 C 1.53006 * 109.47105 * 295.42005 * 10 9 6 14 14 C 1.39579 * 120.31276 * 359.47726 * 4 3 2 15 15 C 1.36322 * 120.16596 * 0.23719 * 14 4 3 16 16 C 1.40875 * 120.08351 * 179.71502 * 2 1 3 17 17 C 1.41139 * 120.15056 * 0.02562 * 16 2 1 18 18 H 1.08001 * 120.00329 * 325.67759 * 17 16 2 19 19 C 1.39865 * 119.99780 * 145.66929 * 17 16 2 20 20 N 1.30900 * 119.99956 * 358.99248 * 19 17 16 21 21 Si 1.86796 * 120.00123 * 178.99381 * 19 17 16 22 22 H 1.48503 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47263 * 120.00073 * 21 19 17 24 24 H 1.48502 * 109.47246 * 240.00195 * 21 19 17 25 25 H 1.09001 * 109.47057 * 270.28603 * 1 2 3 26 26 H 1.08998 * 109.46984 * 30.28294 * 1 2 3 27 27 H 1.09003 * 109.47034 * 150.28540 * 1 2 3 28 28 H 1.08003 * 119.91490 * 0.02562 * 3 2 1 29 29 H 0.96991 * 120.00494 * 10.20839 * 5 4 3 30 30 H 1.08999 * 109.47288 * 271.86247 * 7 6 5 31 31 H 1.09004 * 109.46827 * 151.86796 * 7 6 5 32 32 H 1.09000 * 109.47230 * 31.87451 * 7 6 5 33 33 H 1.09000 * 109.46752 * 188.37078 * 8 6 5 34 34 H 1.09004 * 109.46697 * 308.37490 * 8 6 5 35 35 H 1.09004 * 109.46789 * 68.37258 * 8 6 5 36 36 H 1.09003 * 109.47685 * 69.69232 * 9 6 5 37 37 H 1.09007 * 109.47000 * 189.68788 * 9 6 5 38 38 H 1.09002 * 109.46850 * 39.76366 * 11 10 9 39 39 H 1.08995 * 109.47416 * 159.76141 * 11 10 9 40 40 H 1.08998 * 109.47358 * 279.77142 * 11 10 9 41 41 H 1.09003 * 109.47047 * 59.99804 * 12 10 9 42 42 H 1.09000 * 109.47742 * 179.97438 * 12 10 9 43 43 H 1.08999 * 109.47068 * 300.00063 * 12 10 9 44 44 H 1.08997 * 109.46883 * 85.13585 * 13 10 9 45 45 H 1.09000 * 109.47197 * 205.13679 * 13 10 9 46 46 H 1.08999 * 109.46873 * 325.13770 * 13 10 9 47 47 H 1.08000 * 119.91600 * 180.25655 * 14 4 3 48 48 H 1.07999 * 120.08552 * 180.02562 * 15 14 4 49 49 H 0.97003 * 120.00536 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1799 0.0000 4 6 3.5860 1.1818 -0.0054 5 7 4.2753 2.3872 -0.0104 6 6 5.7220 2.4028 -0.2409 7 6 6.2081 3.8505 -0.3330 8 6 6.0379 1.6745 -1.5490 9 6 6.4307 1.6995 0.9183 10 6 5.9286 2.2717 2.2455 11 6 4.4048 2.1506 2.3093 12 6 6.5512 1.4918 3.4053 13 6 6.3279 3.7451 2.3492 14 6 4.2922 -0.0222 0.0001 15 6 3.6221 -1.2093 0.0060 16 6 2.2132 -1.2190 0.0061 17 6 1.5125 -2.4441 0.0116 18 1 0.5736 -2.5269 0.5390 19 6 2.0339 -3.5510 -0.6661 20 7 3.1618 -3.4452 -1.3219 21 14 1.1207 -5.1802 -0.6354 22 1 -0.1189 -5.0378 0.1699 23 1 0.7677 -5.5761 -2.0224 24 1 1.9875 -6.2222 -0.0286 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8926 -0.5094 28 1 1.6506 2.1152 0.0004 29 1 3.7990 3.2189 0.1386 30 1 6.1309 4.1949 -1.3643 31 1 7.2472 3.9062 -0.0083 32 1 5.5929 4.4819 0.3081 33 1 7.1169 1.5554 -1.6470 34 1 5.5629 0.6934 -1.5424 35 1 5.6587 2.2561 -2.3893 36 1 6.2182 0.6311 0.8797 37 1 7.5059 1.8592 0.8373 38 1 4.0984 1.1935 1.8870 39 1 4.0787 2.2106 3.3476 40 1 3.9516 2.9611 1.7385 41 1 7.6369 1.5782 3.3599 42 1 6.1939 1.8997 4.3508 43 1 6.2668 0.4422 3.3314 44 1 5.5814 4.3600 1.8466 45 1 6.3881 4.0322 3.3990 46 1 7.2986 3.8926 1.8759 47 1 5.3722 -0.0132 0.0001 48 1 4.1698 -2.1401 0.0107 49 1 3.5237 -4.2129 -1.7916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169052580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:42 Heat of formation + Delta-G solvation = 51.746295 kcal Electronic energy + Delta-G solvation = -24993.797982 eV Core-core repulsion = 21921.863577 eV Total energy + Delta-G solvation = -3071.934405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20819 -37.34557 -34.84555 -33.40910 -31.94958 -30.89507 -28.46842 -28.13241 -26.65057 -26.13548 -25.98292 -25.74581 -24.00260 -20.81537 -20.26364 -18.86105 -18.48436 -17.06550 -16.18492 -15.25089 -14.84412 -14.67598 -14.39372 -13.70691 -13.67459 -13.32794 -13.18513 -12.94703 -12.62075 -12.40104 -12.34791 -12.20704 -11.86212 -11.65577 -11.49668 -11.41546 -11.31380 -11.18628 -11.10182 -11.03045 -10.89978 -10.63757 -10.59901 -10.50002 -10.26771 -10.07066 -10.03006 -9.63061 -9.48510 -9.10805 -8.88969 -8.06830 -7.25435 -6.44104 -6.16240 -4.01792 2.94453 3.10757 3.19188 3.23737 3.37599 4.12576 4.31350 4.85964 4.97828 5.10156 5.17489 5.28320 5.35256 5.63049 5.66084 5.75957 5.83496 5.94425 5.95252 5.98363 5.98916 6.06794 6.13560 6.18722 6.20896 6.28649 6.31619 6.38724 6.43788 6.48737 6.53322 6.59264 6.69496 6.73367 6.79046 6.80212 6.87148 7.05649 7.09336 7.21095 7.30392 7.45013 7.70015 7.81904 7.90728 8.22393 8.39471 8.57032 8.76865 8.86684 9.15299 9.22497 10.52515 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.004757 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.911969 B = 5884.860080 C = 6029.986466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.146 4.146 3 C -0.171 4.171 4 C 0.127 3.873 5 N -0.748 5.748 6 C 0.192 3.808 7 C -0.158 4.158 8 C -0.174 4.174 9 C -0.132 4.132 10 C -0.055 4.055 11 C -0.147 4.147 12 C -0.140 4.140 13 C -0.146 4.146 14 C -0.189 4.189 15 C -0.108 4.108 16 C 0.069 3.931 17 C -0.463 4.463 18 H 0.070 0.930 19 C 0.070 3.930 20 N -0.825 5.825 21 Si 0.904 3.096 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.383 0.617 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.017 0.983 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.110 0.890 48 H 0.121 0.879 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 10.476 3.441 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C -0.193 4.193 4 C 0.030 3.970 5 N -0.385 5.385 6 C 0.104 3.896 7 C -0.215 4.215 8 C -0.232 4.232 9 C -0.171 4.171 10 C -0.055 4.055 11 C -0.204 4.204 12 C -0.197 4.197 13 C -0.203 4.203 14 C -0.210 4.210 15 C -0.128 4.128 16 C 0.067 3.933 17 C -0.495 4.495 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.455 5.455 21 Si 0.730 3.270 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.203 1.203 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.219 0.781 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.139 0.861 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.573 10.257 3.257 12.610 hybrid contribution -0.444 -0.481 -0.086 0.660 sum 6.128 9.776 3.171 11.966 Atomic orbital electron populations 1.20426 0.93864 1.00480 0.99552 1.19408 0.94106 0.92882 1.08390 1.19691 0.91718 0.96340 1.11561 1.17087 0.90260 0.85310 1.04380 1.44585 1.04961 1.05555 1.83395 1.19829 0.82186 0.94142 0.93394 1.22487 1.01445 0.96101 1.01456 1.22494 1.00535 1.03360 0.96818 1.22541 0.98157 1.02086 0.94281 1.20338 0.96928 0.94109 0.94170 1.22774 0.93488 1.05518 0.98574 1.21909 0.99612 1.00588 0.97598 1.22366 1.00838 0.96593 1.00507 1.20677 0.98214 0.91916 1.10192 1.21101 0.94767 0.96262 1.00695 1.17369 0.91662 0.91534 0.92780 1.19321 1.06420 0.94334 1.29460 0.91161 1.25724 0.94653 0.99837 0.94006 1.69788 1.17870 1.31067 1.26768 0.86333 0.80278 0.81974 0.78423 1.18864 1.20369 1.20304 0.94080 0.94614 0.91897 0.89800 0.78103 0.93107 0.91791 0.91468 0.93167 0.89746 0.93155 0.89718 0.92795 0.89260 0.96448 0.91714 0.93583 0.93331 0.92584 0.92148 0.93943 0.93074 0.87294 0.86129 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.42 36.01 0.34 -1.46 16 2 C -0.15 -3.45 5.90 -104.30 -0.62 -4.06 16 3 C -0.17 -3.65 9.47 -39.77 -0.38 -4.02 16 4 C 0.13 2.51 3.49 -83.69 -0.29 2.22 16 5 N -0.75 -11.80 2.80 -45.86 -0.13 -11.93 16 6 C 0.19 2.69 0.75 -131.82 -0.10 2.59 16 7 C -0.16 -1.78 7.50 37.16 0.28 -1.51 16 8 C -0.17 -2.65 8.16 37.16 0.30 -2.35 16 9 C -0.13 -1.86 3.22 -26.74 -0.09 -1.95 16 10 C -0.06 -0.75 0.80 -154.51 -0.12 -0.87 16 11 C -0.15 -2.31 6.82 37.16 0.25 -2.05 16 12 C -0.14 -1.84 8.25 37.16 0.31 -1.53 16 13 C -0.15 -1.67 7.31 37.16 0.27 -1.40 16 14 C -0.19 -4.09 5.81 -39.77 -0.23 -4.32 16 15 C -0.11 -2.73 8.58 -39.26 -0.34 -3.07 16 16 C 0.07 1.81 5.53 -106.79 -0.59 1.22 16 17 C -0.46 -12.32 7.88 -37.87 -0.30 -12.62 16 18 H 0.07 1.83 7.19 -52.49 -0.38 1.45 16 19 C 0.07 1.81 5.37 -17.34 -0.09 1.72 16 20 N -0.83 -21.92 10.75 55.54 0.60 -21.33 16 21 Si 0.90 19.55 29.56 -169.99 -5.02 14.53 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.06 1.36 6.92 -51.93 -0.36 1.00 16 28 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 29 H 0.38 5.58 6.90 -40.82 -0.28 5.30 16 30 H 0.05 0.56 7.71 -51.93 -0.40 0.16 16 31 H 0.06 0.66 6.34 -51.93 -0.33 0.33 16 32 H 0.07 0.72 5.16 -51.93 -0.27 0.45 16 33 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.08 1.54 4.83 -51.93 -0.25 1.29 16 35 H 0.05 0.76 7.91 -51.93 -0.41 0.34 16 36 H 0.08 1.40 4.73 -51.93 -0.25 1.15 16 37 H 0.05 0.69 7.76 -51.92 -0.40 0.28 16 38 H 0.09 1.69 4.11 -51.93 -0.21 1.48 16 39 H 0.02 0.26 7.97 -51.93 -0.41 -0.15 16 40 H 0.06 0.97 4.71 -51.93 -0.24 0.73 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.67 5.07 -51.93 -0.26 0.41 16 45 H 0.04 0.47 7.89 -51.93 -0.41 0.06 16 46 H 0.05 0.54 6.31 -51.93 -0.33 0.21 16 47 H 0.11 2.18 3.25 -52.49 -0.17 2.01 16 48 H 0.12 3.23 6.29 -52.49 -0.33 2.90 16 49 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -26.31 344.86 -8.54 -34.84 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -7.79 Total: 12.16 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: -1.39 Total: -33.47 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.47 Total: -33.25 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.31 -8.54 -34.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169052580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.589 kcal (2) G-P(sol) polarization free energy of solvation -26.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds