Wall clock time and date at job start Tue Mar 31 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36360 * 120.08576 * 2 1 4 4 C 1.39548 * 120.16402 * 180.25689 * 3 2 1 5 5 N 1.38858 * 119.83798 * 179.75920 * 4 3 2 6 6 C 1.46504 * 119.99508 * 190.20689 * 5 4 3 7 7 C 1.52996 * 109.46897 * 174.48993 * 6 5 4 8 8 C 1.53011 * 109.46996 * 54.49302 * 6 5 4 9 9 C 1.52992 * 109.47145 * 294.49442 * 6 5 4 10 10 C 1.52993 * 109.47272 * 309.68772 * 9 6 5 11 11 C 1.52997 * 109.47461 * 55.41885 * 10 9 6 12 12 C 1.53000 * 109.47664 * 175.42189 * 10 9 6 13 13 C 1.53006 * 109.47105 * 295.42005 * 10 9 6 14 14 C 1.39579 * 120.31276 * 359.47726 * 4 3 2 15 15 C 1.36322 * 120.16596 * 0.23719 * 14 4 3 16 16 C 1.40875 * 120.08351 * 179.71502 * 2 1 3 17 17 C 1.41139 * 120.15056 * 0.02562 * 16 2 1 18 18 H 1.08001 * 120.00329 * 325.67759 * 17 16 2 19 19 C 1.39865 * 119.99780 * 145.66929 * 17 16 2 20 20 N 1.30900 * 119.99956 * 358.99248 * 19 17 16 21 21 Si 1.86796 * 120.00123 * 178.99381 * 19 17 16 22 22 H 1.48503 * 109.47102 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47263 * 120.00073 * 21 19 17 24 24 H 1.48502 * 109.47246 * 240.00195 * 21 19 17 25 25 H 1.09001 * 109.47057 * 270.28603 * 1 2 3 26 26 H 1.08998 * 109.46984 * 30.28294 * 1 2 3 27 27 H 1.09003 * 109.47034 * 150.28540 * 1 2 3 28 28 H 1.08003 * 119.91490 * 0.02562 * 3 2 1 29 29 H 0.96991 * 120.00494 * 10.20839 * 5 4 3 30 30 H 1.08999 * 109.47288 * 271.86247 * 7 6 5 31 31 H 1.09004 * 109.46827 * 151.86796 * 7 6 5 32 32 H 1.09000 * 109.47230 * 31.87451 * 7 6 5 33 33 H 1.09000 * 109.46752 * 188.37078 * 8 6 5 34 34 H 1.09004 * 109.46697 * 308.37490 * 8 6 5 35 35 H 1.09004 * 109.46789 * 68.37258 * 8 6 5 36 36 H 1.09003 * 109.47685 * 69.69232 * 9 6 5 37 37 H 1.09007 * 109.47000 * 189.68788 * 9 6 5 38 38 H 1.09002 * 109.46850 * 39.76366 * 11 10 9 39 39 H 1.08995 * 109.47416 * 159.76141 * 11 10 9 40 40 H 1.08998 * 109.47358 * 279.77142 * 11 10 9 41 41 H 1.09003 * 109.47047 * 59.99804 * 12 10 9 42 42 H 1.09000 * 109.47742 * 179.97438 * 12 10 9 43 43 H 1.08999 * 109.47068 * 300.00063 * 12 10 9 44 44 H 1.08997 * 109.46883 * 85.13585 * 13 10 9 45 45 H 1.09000 * 109.47197 * 205.13679 * 13 10 9 46 46 H 1.08999 * 109.46873 * 325.13770 * 13 10 9 47 47 H 1.08000 * 119.91600 * 180.25655 * 14 4 3 48 48 H 1.07999 * 120.08552 * 180.02562 * 15 14 4 49 49 H 0.97003 * 120.00536 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1799 0.0000 4 6 3.5860 1.1818 -0.0054 5 7 4.2753 2.3872 -0.0104 6 6 5.7220 2.4028 -0.2409 7 6 6.2081 3.8505 -0.3330 8 6 6.0379 1.6745 -1.5490 9 6 6.4307 1.6995 0.9183 10 6 5.9286 2.2717 2.2455 11 6 4.4048 2.1506 2.3093 12 6 6.5512 1.4918 3.4053 13 6 6.3279 3.7451 2.3492 14 6 4.2922 -0.0222 0.0001 15 6 3.6221 -1.2093 0.0060 16 6 2.2132 -1.2190 0.0061 17 6 1.5125 -2.4441 0.0116 18 1 0.5736 -2.5269 0.5390 19 6 2.0339 -3.5510 -0.6661 20 7 3.1618 -3.4452 -1.3219 21 14 1.1207 -5.1802 -0.6354 22 1 -0.1189 -5.0378 0.1699 23 1 0.7677 -5.5761 -2.0224 24 1 1.9875 -6.2222 -0.0286 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3633 -0.8926 -0.5094 28 1 1.6506 2.1152 0.0004 29 1 3.7990 3.2189 0.1386 30 1 6.1309 4.1949 -1.3643 31 1 7.2472 3.9062 -0.0083 32 1 5.5929 4.4819 0.3081 33 1 7.1169 1.5554 -1.6470 34 1 5.5629 0.6934 -1.5424 35 1 5.6587 2.2561 -2.3893 36 1 6.2182 0.6311 0.8797 37 1 7.5059 1.8592 0.8373 38 1 4.0984 1.1935 1.8870 39 1 4.0787 2.2106 3.3476 40 1 3.9516 2.9611 1.7385 41 1 7.6369 1.5782 3.3599 42 1 6.1939 1.8997 4.3508 43 1 6.2668 0.4422 3.3314 44 1 5.5814 4.3600 1.8466 45 1 6.3881 4.0322 3.3990 46 1 7.2986 3.8926 1.8759 47 1 5.3722 -0.0132 0.0001 48 1 4.1698 -2.1401 0.0107 49 1 3.5237 -4.2129 -1.7916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169052580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:41 Heat of formation + Delta-G solvation = 40.221227 kcal Electronic energy + Delta-G solvation = -24994.297746 eV Core-core repulsion = 21921.863577 eV Total energy + Delta-G solvation = -3072.434170 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55043 -38.97067 -36.17927 -35.08803 -33.51197 -32.59389 -30.03407 -29.38257 -27.90491 -27.40722 -27.32638 -27.03358 -25.72740 -22.61192 -21.78371 -20.18885 -19.72332 -18.93472 -17.74431 -16.76500 -16.37963 -15.98456 -15.74241 -15.17687 -15.11924 -14.73458 -14.45502 -14.28281 -14.12869 -13.93648 -13.71921 -13.43219 -13.22575 -13.04798 -12.96467 -12.77600 -12.74297 -12.67987 -12.59193 -12.46594 -12.23811 -12.23177 -11.99562 -11.87847 -11.52525 -11.31963 -11.28956 -11.16354 -11.09852 -10.83499 -10.55843 -9.66090 -9.04207 -8.33803 -7.84532 -5.94745 1.17968 1.29237 1.39823 1.52773 1.62014 2.31728 2.95531 3.00549 3.84628 3.88173 4.02266 4.08177 4.26465 4.29065 4.53891 4.56256 4.58163 4.73121 4.78255 4.80574 4.86329 4.86995 4.93366 4.96834 4.99239 5.06720 5.07523 5.08345 5.16694 5.19497 5.23225 5.27122 5.32994 5.38694 5.42907 5.45206 5.47101 5.54914 5.60598 5.67781 5.72639 5.87884 5.90805 6.04233 6.10395 6.33804 6.56847 6.81732 7.02759 7.22046 7.29155 7.45595 8.64201 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.004757 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.911969 B = 5884.860080 C = 6029.986466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.155 4.155 3 C -0.186 4.186 4 C 0.162 3.838 5 N -0.735 5.735 6 C 0.190 3.810 7 C -0.151 4.151 8 C -0.173 4.173 9 C -0.130 4.130 10 C -0.053 4.053 11 C -0.143 4.143 12 C -0.140 4.140 13 C -0.141 4.141 14 C -0.192 4.192 15 C -0.129 4.129 16 C 0.023 3.977 17 C -0.491 4.491 18 H 0.063 0.937 19 C 0.024 3.976 20 N -0.862 5.862 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.272 1.272 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.395 0.605 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.067 0.933 47 H 0.124 0.876 48 H 0.092 0.908 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.190 13.553 3.748 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.208 4.208 4 C 0.062 3.938 5 N -0.371 5.371 6 C 0.103 3.897 7 C -0.208 4.208 8 C -0.231 4.231 9 C -0.168 4.168 10 C -0.053 4.053 11 C -0.200 4.200 12 C -0.197 4.197 13 C -0.198 4.198 14 C -0.214 4.214 15 C -0.149 4.149 16 C 0.020 3.980 17 C -0.524 4.524 18 H 0.082 0.918 19 C -0.184 4.184 20 N -0.493 5.493 21 Si 0.794 3.206 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.197 1.197 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.129 0.871 29 H 0.233 0.767 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.141 0.859 48 H 0.110 0.890 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.506 13.379 3.572 15.752 hybrid contribution -0.617 -1.234 -0.134 1.386 sum 6.889 12.146 3.438 14.380 Atomic orbital electron populations 1.20400 0.92183 1.00884 1.00378 1.19802 0.95703 0.92867 1.07270 1.19974 0.92440 0.96660 1.11742 1.17066 0.90084 0.86219 1.00424 1.44653 1.06010 1.04470 1.81997 1.20030 0.80695 0.96388 0.92630 1.22441 1.02613 0.93370 1.02397 1.22469 1.01625 1.01400 0.97653 1.22481 0.99547 1.00097 0.94700 1.20315 0.95129 0.96069 0.93809 1.22709 0.95542 1.03545 0.98222 1.21907 1.00745 0.99174 0.97878 1.22311 1.01856 0.94251 1.01384 1.20794 0.99044 0.91601 1.09913 1.20983 0.94874 0.96502 1.02569 1.17667 0.92274 0.92644 0.95388 1.19483 1.06659 0.95648 1.30652 0.91833 1.26487 0.95447 1.02988 0.93492 1.69900 1.19344 1.31984 1.28058 0.85310 0.79026 0.77733 0.78483 1.18505 1.19820 1.19738 0.92966 0.92090 0.93466 0.87140 0.76705 0.92459 0.89921 0.90230 0.91140 0.93441 0.92921 0.92867 0.90607 0.92928 0.96773 0.90770 0.91867 0.92703 0.94893 0.91411 0.93316 0.91413 0.85920 0.88972 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.41 9.42 71.24 0.67 -2.74 16 2 C -0.15 -7.45 5.90 -19.66 -0.12 -7.57 16 3 C -0.19 -7.81 9.47 22.15 0.21 -7.60 16 4 C 0.16 6.35 3.49 38.67 0.13 6.49 16 5 N -0.73 -21.49 2.80 -299.00 -0.84 -22.32 16 6 C 0.19 4.76 0.75 3.60 0.00 4.77 16 7 C -0.15 -2.69 7.50 71.98 0.54 -2.15 16 8 C -0.17 -4.98 8.16 71.99 0.59 -4.39 16 9 C -0.13 -3.37 3.22 30.59 0.10 -3.27 16 10 C -0.05 -1.30 0.80 -52.18 -0.04 -1.34 16 11 C -0.14 -4.27 6.82 71.98 0.49 -3.78 16 12 C -0.14 -3.44 8.25 71.98 0.59 -2.84 16 13 C -0.14 -2.59 7.31 71.98 0.53 -2.07 16 14 C -0.19 -8.63 5.81 22.15 0.13 -8.50 16 15 C -0.13 -6.94 8.58 22.47 0.19 -6.75 16 16 C 0.02 1.26 5.53 -21.27 -0.12 1.14 16 17 C -0.49 -27.68 7.88 23.38 0.18 -27.50 16 18 H 0.06 3.50 7.19 -2.91 -0.02 3.48 16 19 C 0.02 1.30 5.37 85.23 0.46 1.76 16 20 N -0.86 -48.56 10.75 21.82 0.23 -48.33 16 21 Si 0.97 41.86 29.56 68.60 2.03 43.89 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 27 H 0.05 2.09 6.92 -2.39 -0.02 2.07 16 28 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.40 10.07 6.90 -92.71 -0.64 9.43 16 30 H 0.06 0.99 7.71 -2.39 -0.02 0.97 16 31 H 0.08 1.23 6.34 -2.38 -0.02 1.21 16 32 H 0.08 1.26 5.16 -2.39 -0.01 1.25 16 33 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 34 H 0.05 1.73 4.83 -2.39 -0.01 1.72 16 35 H 0.05 1.47 7.91 -2.39 -0.02 1.45 16 36 H 0.05 1.74 4.73 -2.39 -0.01 1.73 16 37 H 0.08 1.66 7.76 -2.38 -0.02 1.64 16 38 H 0.05 1.98 4.11 -2.39 -0.01 1.97 16 39 H 0.01 0.41 7.97 -2.39 -0.02 0.39 16 40 H 0.07 2.01 4.71 -2.39 -0.01 2.00 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 43 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 1.16 5.07 -2.39 -0.01 1.15 16 45 H 0.05 0.86 7.89 -2.39 -0.02 0.84 16 46 H 0.07 1.05 6.31 -2.39 -0.02 1.04 16 47 H 0.12 5.11 3.25 -2.91 -0.01 5.10 16 48 H 0.09 5.38 6.29 -2.91 -0.02 5.36 16 49 H 0.27 14.25 8.30 -92.71 -0.77 13.48 16 Total: -1.00 -61.37 344.86 6.29 -55.08 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.31 Total: 38.03 kcal Atomic # 6 Polarization: -70.89 SS G_CDS: 4.54 Total: -66.35 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.60 Total: -70.65 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -61.37 6.29 -55.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169052580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.301 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds