Wall clock time and date at job start Tue Mar 31 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47250 * 54.48235 * 3 2 1 5 5 C 1.50708 * 109.46813 * 174.48004 * 3 2 1 6 6 H 1.08001 * 119.99667 * 120.00410 * 5 3 2 7 7 C 1.37874 * 120.00112 * 299.99524 * 5 3 2 8 8 N 1.31511 * 119.99750 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99989 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47347 * 89.99907 * 9 7 5 11 11 H 1.48504 * 109.47074 * 209.99598 * 9 7 5 12 12 H 1.48498 * 109.47150 * 329.99276 * 9 7 5 13 13 N 1.46892 * 109.47182 * 294.47874 * 3 2 1 14 14 C 1.46903 * 110.99918 * 97.20983 * 13 3 2 15 15 H 1.08997 * 109.46853 * 343.81053 * 14 13 3 16 16 C 1.52999 * 109.47119 * 103.81262 * 14 13 3 17 17 C 1.50697 * 109.47146 * 294.99751 * 16 14 13 18 18 C 1.38235 * 120.00074 * 89.99954 * 17 16 14 19 19 C 1.38234 * 120.00292 * 180.02562 * 18 17 16 20 20 C 1.38228 * 119.99819 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.00209 * 0.25619 * 20 19 18 22 22 C 1.38232 * 119.99655 * 359.48900 * 21 20 19 23 23 C 1.53007 * 109.46979 * 223.80968 * 14 13 3 24 24 C 1.53001 * 109.46783 * 175.53500 * 23 14 13 25 25 C 1.53006 * 109.46693 * 174.39849 * 24 23 14 26 26 C 1.52991 * 109.47582 * 294.39943 * 24 23 14 27 27 H 1.09001 * 109.47211 * 186.22621 * 1 2 3 28 28 H 1.08999 * 109.46795 * 306.23620 * 1 2 3 29 29 H 1.09008 * 109.46697 * 66.23178 * 1 2 3 30 30 H 1.09005 * 109.47246 * 239.99218 * 2 1 3 31 31 H 1.09002 * 109.46681 * 119.99846 * 2 1 3 32 32 H 0.97005 * 120.00017 * 179.97438 * 8 7 5 33 33 H 1.00901 * 111.00497 * 333.25814 * 13 3 2 34 34 H 1.08998 * 109.46935 * 175.00209 * 16 14 13 35 35 H 1.09000 * 109.47498 * 54.99973 * 16 14 13 36 36 H 1.08001 * 119.99794 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.00015 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.00285 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.99961 * 179.72374 * 21 20 19 40 40 H 1.08008 * 119.99744 * 180.22667 * 22 21 20 41 41 H 1.08998 * 109.47365 * 295.54196 * 23 14 13 42 42 H 1.09007 * 109.46819 * 55.53882 * 23 14 13 43 43 H 1.09004 * 109.46803 * 54.40567 * 24 23 14 44 44 H 1.09000 * 109.47156 * 55.14775 * 25 24 23 45 45 H 1.09005 * 109.46528 * 175.14639 * 25 24 23 46 46 H 1.08995 * 109.47257 * 295.14533 * 25 24 23 47 47 H 1.08997 * 109.47443 * 305.81520 * 26 24 23 48 48 H 1.09005 * 109.46909 * 65.81335 * 26 24 23 49 49 H 1.09004 * 109.47223 * 185.81378 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5983 1.9840 0.8365 5 6 3.5409 1.4445 0.1367 6 1 4.1528 1.8868 -0.6356 7 6 4.1327 0.8820 1.2476 8 7 5.4425 0.8834 1.3666 9 14 3.0744 0.1167 2.5831 10 1 2.8560 -1.3204 2.2789 11 1 3.7605 0.2465 3.8937 12 1 1.7653 0.8155 2.6384 13 7 1.6622 2.0954 -1.2604 14 6 0.4359 2.8872 -1.0961 15 1 -0.0690 2.5887 -0.1774 16 6 0.7942 4.3728 -1.0217 17 6 1.6056 4.6321 0.2214 18 6 2.9842 4.5390 0.1789 19 6 3.7285 4.7764 1.3193 20 6 3.0943 5.1073 2.5021 21 6 1.7155 5.1957 2.5459 22 6 0.9715 4.9636 1.4042 23 6 -0.4910 2.6454 -2.2892 24 6 -1.8133 3.3818 -2.0652 25 6 -2.6853 3.2562 -3.3162 26 6 -2.5440 2.7661 -0.8703 27 1 -0.3634 -1.0216 0.1115 28 1 -0.3633 0.6075 0.8289 29 1 -0.3633 0.4142 -0.9406 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8589 0.4880 2.1484 33 1 1.5590 1.4185 -2.0016 34 1 -0.1198 4.9658 -0.9891 35 1 1.3765 4.6507 -1.9002 36 1 3.4797 4.2809 -0.7454 37 1 4.8055 4.7032 1.2861 38 1 3.6758 5.2923 3.3932 39 1 1.2198 5.4499 3.4711 40 1 -0.1056 5.0363 1.4375 41 1 -0.0177 3.0167 -3.1982 42 1 -0.6826 1.5770 -2.3897 43 1 -1.6135 4.4347 -1.8658 44 1 -2.8135 2.2028 -3.5654 45 1 -3.6599 3.7060 -3.1264 46 1 -2.2036 3.7702 -4.1479 47 1 -2.6522 1.6925 -1.0244 48 1 -1.9702 2.9466 0.0387 49 1 -3.5301 3.2205 -0.7739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169061322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:58 Heat of formation + Delta-G solvation = 5.813165 kcal Electronic energy + Delta-G solvation = -25076.567285 eV Core-core repulsion = 22002.641070 eV Total energy + Delta-G solvation = -3073.926215 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.09872 -37.59661 -35.72808 -33.22221 -31.90985 -30.61896 -30.06313 -28.81683 -27.15753 -26.37240 -25.76335 -22.59676 -21.78805 -21.32297 -20.48914 -20.05070 -19.19346 -16.58080 -16.12506 -15.48830 -15.24070 -14.62965 -14.37139 -14.32689 -14.04248 -13.66084 -13.22040 -13.15222 -12.82266 -12.68223 -12.47321 -12.40785 -12.21626 -11.96011 -11.85792 -11.77521 -11.50805 -11.30098 -11.15407 -10.98139 -10.77051 -10.66572 -10.48746 -10.37054 -10.20517 -10.09070 -9.94265 -9.76665 -9.31571 -9.05655 -8.46033 -8.05277 -7.86958 -7.24834 -5.95785 -3.88813 2.15583 2.25511 3.29471 3.42557 3.43278 4.48798 4.58290 4.75289 4.94731 4.96714 5.22256 5.32721 5.43192 5.52549 5.53405 5.60594 5.65944 5.72484 5.73206 5.78318 5.81984 5.84803 5.85680 5.92485 5.98700 6.01026 6.08952 6.17907 6.22973 6.25826 6.28023 6.37698 6.40025 6.49541 6.56150 6.60106 6.62841 6.77960 6.83383 6.85755 6.90937 7.19701 7.22346 7.38296 7.51596 7.84111 7.86334 8.05285 8.45057 8.81249 9.16703 9.69842 11.17666 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.007381 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.911135 B = 3792.403767 C = 4887.443255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.033 0.967 5 C -0.476 4.476 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.284 1.284 11 H -0.300 1.300 12 H -0.269 1.269 13 N -0.665 5.665 14 C 0.089 3.911 15 H 0.053 0.947 16 C -0.066 4.066 17 C -0.074 4.074 18 C -0.054 4.054 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.097 4.097 25 C -0.146 4.146 26 C -0.149 4.149 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.260 0.740 33 H 0.327 0.673 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 6.369 -4.517 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.200 4.200 3 C 0.084 3.916 4 H 0.050 0.950 5 C -0.515 4.515 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.542 5.542 9 Si 0.705 3.295 10 H -0.212 1.212 11 H -0.227 1.227 12 H -0.194 1.194 13 N -0.294 5.294 14 C -0.022 4.022 15 H 0.071 0.929 16 C -0.104 4.104 17 C -0.074 4.074 18 C -0.072 4.072 19 C -0.118 4.118 20 C -0.150 4.150 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.163 4.163 24 C -0.116 4.116 25 C -0.203 4.203 26 C -0.206 4.206 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.795 6.854 -4.303 15.139 hybrid contribution -1.141 -1.580 1.162 2.269 sum -13.936 5.274 -3.141 15.228 Atomic orbital electron populations 1.22010 0.98266 1.00117 1.01008 1.22687 0.93242 1.02619 1.01412 1.19759 0.96870 0.87294 0.87641 0.94964 1.20926 0.88924 1.35956 1.05699 0.90121 1.24838 0.94474 0.96117 0.97498 1.69869 1.08654 1.46408 1.29233 0.87085 0.81144 0.79461 0.81859 1.21191 1.22745 1.19402 1.60615 1.31146 1.29140 1.08520 1.21663 0.89989 0.93876 0.96640 0.92856 1.20691 0.97909 0.96061 0.95697 1.19674 0.94261 0.98837 0.94631 1.20920 0.92913 0.94598 0.98790 1.21072 0.99961 0.97863 0.92887 1.20971 0.94472 1.01797 0.97773 1.20853 0.94229 1.02791 0.97548 1.20811 0.98541 1.02636 0.93158 1.22083 0.94908 1.00016 0.99251 1.21161 0.94983 1.00409 0.95032 1.21843 0.99285 1.01520 0.97658 1.21899 0.99677 1.00668 0.98375 0.94231 0.93618 0.92899 0.92200 0.93069 0.93049 0.85558 0.92223 0.91128 0.85822 0.86650 0.87449 0.87597 0.87711 0.91478 0.92077 0.90807 0.92971 0.93105 0.92834 0.92907 0.92347 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.69 37.16 0.32 -2.39 16 2 C -0.16 -3.38 4.78 -26.73 -0.13 -3.51 16 3 C 0.19 4.28 0.79 -68.87 -0.05 4.23 16 4 H 0.03 0.79 5.80 -51.93 -0.30 0.49 16 5 C -0.48 -12.63 8.16 -34.44 -0.28 -12.91 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.87 22.32 24.41 -169.99 -4.15 18.17 16 10 H -0.28 -7.16 6.83 56.52 0.39 -6.77 16 11 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 12 H -0.27 -6.74 6.53 56.52 0.37 -6.37 16 13 N -0.66 -12.32 5.50 -100.95 -0.56 -12.88 16 14 C 0.09 1.37 1.06 -67.71 -0.07 1.30 16 15 H 0.05 0.91 4.53 -51.93 -0.24 0.68 16 16 C -0.07 -1.00 4.89 -27.88 -0.14 -1.13 16 17 C -0.07 -1.32 4.05 -104.63 -0.42 -1.74 16 18 C -0.05 -1.07 7.49 -39.58 -0.30 -1.36 16 19 C -0.10 -1.99 10.05 -39.59 -0.40 -2.39 16 20 C -0.13 -2.44 10.05 -39.59 -0.40 -2.84 16 21 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 22 C -0.13 -2.29 9.70 -39.58 -0.38 -2.67 16 23 C -0.12 -1.55 3.83 -26.73 -0.10 -1.66 16 24 C -0.10 -1.05 2.79 -90.62 -0.25 -1.30 16 25 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 26 C -0.15 -1.65 8.82 37.15 0.33 -1.32 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.81 7.84 -51.93 -0.41 0.40 16 29 H 0.05 0.81 5.29 -51.92 -0.27 0.53 16 30 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 31 H 0.05 1.19 3.21 -51.93 -0.17 1.03 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.33 5.76 7.59 -39.29 -0.30 5.46 16 34 H 0.06 0.79 6.16 -51.93 -0.32 0.47 16 35 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 37 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.77 6.42 -51.93 -0.33 0.44 16 43 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.72 6.77 -51.93 -0.35 0.36 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -28.71 363.73 -9.40 -38.12 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.53 Total: 8.93 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -2.43 Total: -31.56 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.22 Total: -39.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.15 Total: 18.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.71 -9.40 -38.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.931 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds