Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47250 * 54.48235 * 3 2 1 5 5 C 1.50708 * 109.46813 * 174.48004 * 3 2 1 6 6 H 1.08001 * 119.99667 * 120.00410 * 5 3 2 7 7 C 1.37874 * 120.00112 * 299.99524 * 5 3 2 8 8 N 1.31511 * 119.99750 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99989 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47347 * 89.99907 * 9 7 5 11 11 H 1.48504 * 109.47074 * 209.99598 * 9 7 5 12 12 H 1.48498 * 109.47150 * 329.99276 * 9 7 5 13 13 N 1.46892 * 109.47182 * 294.47874 * 3 2 1 14 14 C 1.46903 * 110.99918 * 97.20983 * 13 3 2 15 15 H 1.08997 * 109.46853 * 343.81053 * 14 13 3 16 16 C 1.52999 * 109.47119 * 103.81262 * 14 13 3 17 17 C 1.50697 * 109.47146 * 294.99751 * 16 14 13 18 18 C 1.38235 * 120.00074 * 89.99954 * 17 16 14 19 19 C 1.38234 * 120.00292 * 180.02562 * 18 17 16 20 20 C 1.38228 * 119.99819 * 359.97438 * 19 18 17 21 21 C 1.38236 * 120.00209 * 0.25619 * 20 19 18 22 22 C 1.38232 * 119.99655 * 359.48900 * 21 20 19 23 23 C 1.53007 * 109.46979 * 223.80968 * 14 13 3 24 24 C 1.53001 * 109.46783 * 175.53500 * 23 14 13 25 25 C 1.53006 * 109.46693 * 174.39849 * 24 23 14 26 26 C 1.52991 * 109.47582 * 294.39943 * 24 23 14 27 27 H 1.09001 * 109.47211 * 186.22621 * 1 2 3 28 28 H 1.08999 * 109.46795 * 306.23620 * 1 2 3 29 29 H 1.09008 * 109.46697 * 66.23178 * 1 2 3 30 30 H 1.09005 * 109.47246 * 239.99218 * 2 1 3 31 31 H 1.09002 * 109.46681 * 119.99846 * 2 1 3 32 32 H 0.97005 * 120.00017 * 179.97438 * 8 7 5 33 33 H 1.00901 * 111.00497 * 333.25814 * 13 3 2 34 34 H 1.08998 * 109.46935 * 175.00209 * 16 14 13 35 35 H 1.09000 * 109.47498 * 54.99973 * 16 14 13 36 36 H 1.08001 * 119.99794 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.00015 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.00285 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.99961 * 179.72374 * 21 20 19 40 40 H 1.08008 * 119.99744 * 180.22667 * 22 21 20 41 41 H 1.08998 * 109.47365 * 295.54196 * 23 14 13 42 42 H 1.09007 * 109.46819 * 55.53882 * 23 14 13 43 43 H 1.09004 * 109.46803 * 54.40567 * 24 23 14 44 44 H 1.09000 * 109.47156 * 55.14775 * 25 24 23 45 45 H 1.09005 * 109.46528 * 175.14639 * 25 24 23 46 46 H 1.08995 * 109.47257 * 295.14533 * 25 24 23 47 47 H 1.08997 * 109.47443 * 305.81520 * 26 24 23 48 48 H 1.09005 * 109.46909 * 65.81335 * 26 24 23 49 49 H 1.09004 * 109.47223 * 185.81378 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5983 1.9840 0.8365 5 6 3.5409 1.4445 0.1367 6 1 4.1528 1.8868 -0.6356 7 6 4.1327 0.8820 1.2476 8 7 5.4425 0.8834 1.3666 9 14 3.0744 0.1167 2.5831 10 1 2.8560 -1.3204 2.2789 11 1 3.7605 0.2465 3.8937 12 1 1.7653 0.8155 2.6384 13 7 1.6622 2.0954 -1.2604 14 6 0.4359 2.8872 -1.0961 15 1 -0.0690 2.5887 -0.1774 16 6 0.7942 4.3728 -1.0217 17 6 1.6056 4.6321 0.2214 18 6 2.9842 4.5390 0.1789 19 6 3.7285 4.7764 1.3193 20 6 3.0943 5.1073 2.5021 21 6 1.7155 5.1957 2.5459 22 6 0.9715 4.9636 1.4042 23 6 -0.4910 2.6454 -2.2892 24 6 -1.8133 3.3818 -2.0652 25 6 -2.6853 3.2562 -3.3162 26 6 -2.5440 2.7661 -0.8703 27 1 -0.3634 -1.0216 0.1115 28 1 -0.3633 0.6075 0.8289 29 1 -0.3633 0.4142 -0.9406 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8589 0.4880 2.1484 33 1 1.5590 1.4185 -2.0016 34 1 -0.1198 4.9658 -0.9891 35 1 1.3765 4.6507 -1.9002 36 1 3.4797 4.2809 -0.7454 37 1 4.8055 4.7032 1.2861 38 1 3.6758 5.2923 3.3932 39 1 1.2198 5.4499 3.4711 40 1 -0.1056 5.0363 1.4375 41 1 -0.0177 3.0167 -3.1982 42 1 -0.6826 1.5770 -2.3897 43 1 -1.6135 4.4347 -1.8658 44 1 -2.8135 2.2028 -3.5654 45 1 -3.6599 3.7060 -3.1264 46 1 -2.2036 3.7702 -4.1479 47 1 -2.6522 1.6925 -1.0244 48 1 -1.9702 2.9466 0.0387 49 1 -3.5301 3.2205 -0.7739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169061322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = -9.543822 kcal Electronic energy + Delta-G solvation = -25077.233214 eV Core-core repulsion = 22002.641070 eV Total energy + Delta-G solvation = -3074.592144 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46698 -38.94365 -37.06224 -34.66068 -33.84085 -32.05733 -31.50974 -30.26720 -28.10745 -27.91961 -26.94541 -24.31646 -23.23192 -22.64419 -21.88294 -21.58510 -20.34258 -18.57946 -17.53053 -17.07999 -16.51705 -16.21744 -15.71748 -15.62699 -15.40621 -15.09071 -14.73320 -14.43619 -14.28293 -14.08722 -13.90584 -13.71509 -13.52775 -13.38963 -13.22560 -12.98945 -12.75425 -12.60902 -12.45451 -12.40048 -12.31332 -12.12693 -11.73874 -11.63174 -11.62440 -11.54464 -11.27728 -11.16500 -11.13489 -10.86781 -10.59696 -9.53153 -9.32648 -8.76694 -8.16079 -6.10122 0.70981 0.79778 1.24139 1.32172 1.38412 2.36009 3.12434 3.20692 3.54175 3.92945 4.05964 4.17769 4.19191 4.26539 4.28034 4.33951 4.36034 4.43965 4.45335 4.52728 4.64886 4.70879 4.76733 4.85847 4.86801 4.89660 4.95865 5.02975 5.05491 5.06970 5.10606 5.11133 5.15378 5.21842 5.26138 5.32896 5.41070 5.43370 5.44842 5.55008 5.60337 5.65804 5.76496 5.83271 5.90057 6.04966 6.24249 6.39970 6.86267 6.94905 6.97824 7.52088 9.01093 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.007381 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.911135 B = 3792.403767 C = 4887.443255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.162 4.162 3 C 0.209 3.791 4 H 0.016 0.984 5 C -0.458 4.458 6 H 0.040 0.960 7 C 0.019 3.981 8 N -0.949 5.949 9 Si 0.926 3.074 10 H -0.277 1.277 11 H -0.309 1.309 12 H -0.258 1.258 13 N -0.673 5.673 14 C 0.094 3.906 15 H 0.046 0.954 16 C -0.063 4.063 17 C -0.077 4.077 18 C -0.073 4.073 19 C -0.126 4.126 20 C -0.145 4.145 21 C -0.136 4.136 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.093 4.093 25 C -0.143 4.143 26 C -0.149 4.149 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.257 0.743 33 H 0.333 0.667 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.045 0.955 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.508 6.542 -4.740 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.099 3.901 4 H 0.034 0.966 5 C -0.497 4.497 6 H 0.058 0.942 7 C -0.177 4.177 8 N -0.592 5.592 9 Si 0.756 3.244 10 H -0.204 1.204 11 H -0.237 1.237 12 H -0.182 1.182 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.064 0.936 16 C -0.101 4.101 17 C -0.077 4.077 18 C -0.091 4.091 19 C -0.145 4.145 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.112 4.112 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.962 7.031 -4.549 18.917 hybrid contribution 0.169 -1.549 1.146 1.934 sum -16.793 5.482 -3.403 17.990 Atomic orbital electron populations 1.21909 0.94844 1.01560 1.02074 1.22593 0.96321 1.00821 1.00413 1.19367 0.93550 0.88467 0.88734 0.96597 1.21139 0.91308 1.33418 1.03822 0.94167 1.25458 0.95200 0.97298 0.99726 1.70018 1.10430 1.48662 1.30042 0.86213 0.79946 0.79191 0.79016 1.20354 1.23733 1.18235 1.60432 1.33745 1.29147 1.07026 1.21658 0.88955 0.93121 0.97851 0.93587 1.20746 0.98663 0.96369 0.94293 1.19961 0.93445 0.97982 0.96279 1.20826 0.94221 0.96242 0.97825 1.21100 0.99358 0.99741 0.94261 1.21201 0.95663 1.01912 0.97517 1.21260 0.93626 1.01473 0.99041 1.21206 1.00171 1.01380 0.92515 1.22001 0.95161 1.00548 0.97711 1.21130 0.94073 1.00165 0.95799 1.21809 0.99508 1.01783 0.96925 1.21900 1.00249 1.00754 0.97716 0.92325 0.93884 0.90817 0.92050 0.95242 0.93425 0.84826 0.89289 0.91446 0.88084 0.88590 0.86057 0.84459 0.84577 0.91094 0.91819 0.90485 0.92909 0.92043 0.92468 0.93050 0.93573 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 8.69 71.98 0.63 -3.96 16 2 C -0.16 -6.57 4.78 30.59 0.15 -6.42 16 3 C 0.21 9.16 0.79 44.17 0.03 9.19 16 4 H 0.02 0.78 5.80 -2.39 -0.01 0.76 16 5 C -0.46 -25.07 8.16 25.60 0.21 -24.86 16 6 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 7 C 0.02 1.10 5.45 84.65 0.46 1.56 16 8 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 9 Si 0.93 46.66 24.41 68.60 1.67 48.34 16 10 H -0.28 -13.46 6.83 99.48 0.68 -12.78 16 11 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 12 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 13 N -0.67 -24.43 5.50 -473.31 -2.60 -27.03 16 14 C 0.09 2.69 1.06 44.92 0.05 2.73 16 15 H 0.05 1.43 4.53 -2.39 -0.01 1.42 16 16 C -0.06 -1.78 4.89 29.85 0.15 -1.64 16 17 C -0.08 -2.65 4.05 -19.87 -0.08 -2.73 16 18 C -0.07 -2.99 7.49 22.27 0.17 -2.82 16 19 C -0.13 -5.32 10.05 22.27 0.22 -5.09 16 20 C -0.14 -5.36 10.05 22.27 0.22 -5.14 16 21 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 22 C -0.13 -4.28 9.70 22.27 0.22 -4.06 16 23 C -0.12 -2.52 3.83 30.60 0.12 -2.40 16 24 C -0.09 -1.64 2.79 -10.79 -0.03 -1.67 16 25 C -0.14 -2.12 9.19 71.98 0.66 -1.46 16 26 C -0.15 -2.70 8.82 71.98 0.63 -2.06 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 29 H 0.07 1.98 5.29 -2.38 -0.01 1.96 16 30 H 0.06 2.43 8.01 -2.38 -0.02 2.41 16 31 H 0.03 1.32 3.21 -2.39 -0.01 1.32 16 32 H 0.26 15.44 8.31 -92.70 -0.77 14.66 16 33 H 0.33 11.30 7.59 -89.69 -0.68 10.62 16 34 H 0.09 2.02 6.16 -2.39 -0.01 2.01 16 35 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 36 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.37 6.42 -2.38 -0.02 1.36 16 43 H 0.08 1.33 6.20 -2.38 -0.01 1.32 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.05 0.95 6.77 -2.38 -0.02 0.93 16 49 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -64.63 363.73 3.54 -61.08 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.14 Total: 31.81 kcal Atomic # 6 Polarization: -59.06 SS G_CDS: 4.03 Total: -55.04 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.30 Total: -86.19 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.34 kcal Total: -64.63 3.54 -61.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.539 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds