Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 H 1.08994 * 109.47022 * 306.60381 * 3 2 1 5 5 C 1.50707 * 109.47008 * 186.60554 * 3 2 1 6 6 H 1.07998 * 119.99603 * 239.99779 * 5 3 2 7 7 C 1.37871 * 119.99793 * 59.99798 * 5 3 2 8 8 N 1.31515 * 120.00542 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47592 * 89.99693 * 9 7 5 11 11 H 1.48503 * 109.47120 * 210.00151 * 9 7 5 12 12 H 1.48505 * 109.46865 * 329.99589 * 9 7 5 13 13 N 1.46902 * 109.47168 * 66.60599 * 3 2 1 14 14 C 1.46897 * 110.99778 * 254.32369 * 13 3 2 15 15 H 1.09004 * 109.47305 * 33.33957 * 14 13 3 16 16 C 1.53000 * 109.47062 * 153.34206 * 14 13 3 17 17 C 1.50704 * 109.47036 * 294.99805 * 16 14 13 18 18 C 1.38236 * 119.99629 * 89.99598 * 17 16 14 19 19 C 1.38234 * 119.99607 * 180.02562 * 18 17 16 20 20 C 1.38230 * 120.00122 * 359.96679 * 19 18 17 21 21 C 1.38233 * 120.00080 * 0.27097 * 20 19 18 22 22 C 1.38226 * 120.00058 * 359.53465 * 21 20 19 23 23 C 1.52999 * 109.47293 * 273.34170 * 14 13 3 24 24 C 1.53000 * 109.47256 * 66.62703 * 23 14 13 25 25 C 1.52997 * 109.47211 * 65.60071 * 24 23 14 26 26 C 1.53003 * 109.47267 * 185.59977 * 24 23 14 27 27 H 1.08997 * 109.47512 * 183.95989 * 1 2 3 28 28 H 1.08998 * 109.47559 * 303.96812 * 1 2 3 29 29 H 1.09001 * 109.46850 * 63.96280 * 1 2 3 30 30 H 1.08993 * 109.47462 * 239.99271 * 2 1 3 31 31 H 1.09008 * 109.46997 * 119.99550 * 2 1 3 32 32 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99777 * 130.37262 * 13 3 2 34 34 H 1.09003 * 109.47109 * 175.00161 * 16 14 13 35 35 H 1.08996 * 109.47205 * 55.00282 * 16 14 13 36 36 H 1.07999 * 120.00129 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.99762 * 179.97438 * 19 18 17 38 38 H 1.08006 * 120.00188 * 179.97438 * 20 19 18 39 39 H 1.08009 * 120.00171 * 179.72750 * 21 20 19 40 40 H 1.07998 * 120.00355 * 180.20872 * 22 21 20 41 41 H 1.09000 * 109.47356 * 186.62763 * 23 14 13 42 42 H 1.09003 * 109.47369 * 306.62732 * 23 14 13 43 43 H 1.08999 * 109.46950 * 305.59905 * 24 23 14 44 44 H 1.08999 * 109.47300 * 60.00048 * 25 24 23 45 45 H 1.08995 * 109.47560 * 180.02562 * 25 24 23 46 46 H 1.09006 * 109.47309 * 300.00425 * 25 24 23 47 47 H 1.09000 * 109.46752 * 59.99955 * 26 24 23 48 48 H 1.08998 * 109.47212 * 179.97438 * 26 24 23 49 49 H 1.08999 * 109.47077 * 299.99850 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5834 1.9893 -0.8249 5 6 3.5382 1.4456 -0.1634 6 1 4.1637 1.8830 0.6006 7 6 4.1100 0.8901 -1.2883 8 7 3.3482 0.3570 -2.2184 9 14 5.9670 0.8933 -1.4906 10 1 6.5320 -0.3444 -0.8955 11 1 6.3075 0.9481 -2.9350 12 1 6.5379 2.0788 -0.8022 13 7 1.6847 2.0875 1.2711 14 6 0.5776 3.0356 1.0890 15 1 -0.0931 2.6664 0.3131 16 6 -0.1927 3.1788 2.4032 17 6 -0.8455 1.8651 2.7485 18 6 -0.1669 0.9367 3.5155 19 6 -0.7655 -0.2685 3.8318 20 6 -2.0429 -0.5449 3.3817 21 6 -2.7196 0.3815 2.6106 22 6 -2.1226 1.5883 2.2976 23 6 1.1361 4.3983 0.6741 24 6 1.7629 4.2904 -0.7174 25 6 0.6722 3.9845 -1.7458 26 6 2.4435 5.6135 -1.0742 27 1 -0.3634 -1.0252 0.0710 28 1 -0.3634 0.5742 0.8522 29 1 -0.3633 0.4511 -0.9234 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 3.7506 -0.0342 -3.0096 33 1 2.4862 2.5422 1.6823 34 1 -0.9580 3.9472 2.2939 35 1 0.4960 3.4626 3.1989 36 1 0.8310 1.1529 3.8676 37 1 -0.2351 -0.9941 4.4307 38 1 -2.5105 -1.4867 3.6284 39 1 -3.7160 0.1637 2.2552 40 1 -2.6526 2.3135 1.6980 41 1 0.3291 5.1307 0.6533 42 1 1.8945 4.7137 1.3907 43 1 2.5017 3.4890 -0.7219 44 1 -0.0666 4.7859 -1.7412 45 1 1.1187 3.9072 -2.7370 46 1 0.1872 3.0419 -1.4916 47 1 3.2206 5.8314 -0.3416 48 1 2.8904 5.5365 -2.0653 49 1 1.7047 6.4149 -1.0697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169061323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = -1.864206 kcal Electronic energy + Delta-G solvation = -24994.085880 eV Core-core repulsion = 21919.826749 eV Total energy + Delta-G solvation = -3074.259131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.21727 -37.78438 -34.50314 -33.54863 -31.67049 -30.64075 -30.43183 -28.47267 -26.69242 -25.81892 -25.68436 -22.68278 -22.14707 -21.51181 -20.00830 -19.60245 -18.87915 -16.59648 -16.23389 -15.43497 -14.85493 -14.62363 -14.58603 -13.88763 -13.79586 -13.52701 -13.18881 -13.00917 -12.65395 -12.55441 -12.45444 -11.97328 -11.83872 -11.73483 -11.61260 -11.34652 -11.21403 -11.08825 -10.79323 -10.77352 -10.72018 -10.63482 -10.50577 -10.10118 -10.02360 -9.92388 -9.82735 -9.39073 -9.28940 -8.70905 -8.46980 -8.36687 -8.11204 -7.04696 -5.99419 -4.06759 1.80113 1.86579 3.28712 3.36129 3.38149 4.22492 4.41020 5.11519 5.18612 5.27166 5.33016 5.39026 5.43968 5.48847 5.56491 5.60323 5.86612 5.93188 5.94794 5.96701 6.05609 6.09433 6.17422 6.27139 6.34526 6.36954 6.39488 6.44981 6.47953 6.51152 6.56982 6.59145 6.69342 6.80114 6.84036 6.87187 6.93358 6.98941 7.14278 7.22127 7.30105 7.37398 7.45240 7.61037 7.70733 7.81800 8.06323 8.35971 8.49026 8.78160 9.09020 9.58793 11.03874 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.006174 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.137807 B = 4534.368913 C = 5564.624208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C 0.207 3.793 4 H 0.035 0.965 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.678 5.678 14 C 0.091 3.909 15 H 0.076 0.924 16 C -0.073 4.073 17 C -0.050 4.050 18 C -0.083 4.083 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.139 4.139 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.260 0.740 33 H 0.328 0.672 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.122 0.878 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.048 0.952 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 4.871 7.339 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C 0.100 3.900 4 H 0.052 0.948 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.308 5.308 14 C -0.020 4.020 15 H 0.094 0.906 16 C -0.111 4.111 17 C -0.050 4.050 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.173 4.173 24 C -0.140 4.140 25 C -0.196 4.196 26 C -0.196 4.196 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.074 4.257 7.345 12.426 hybrid contribution 1.511 0.528 -0.813 1.795 sum -7.563 4.785 6.532 11.080 Atomic orbital electron populations 1.21963 0.99644 0.98811 1.00418 1.21495 0.91571 0.99862 1.01125 1.19394 0.93869 0.91251 0.85485 0.94754 1.21480 0.92021 1.38351 1.04430 0.92681 1.24873 0.97509 0.95188 0.95949 1.69891 1.34425 1.38567 1.09158 0.86697 0.86384 0.78385 0.77111 1.20791 1.21397 1.20044 1.60792 1.09630 1.31203 1.29214 1.21644 0.94719 0.90915 0.94768 0.90555 1.20713 0.98338 0.93292 0.98782 1.19676 0.93165 0.96444 0.95741 1.20959 0.98895 0.93098 0.97141 1.21076 0.95182 0.97188 1.00595 1.20969 0.95542 0.99008 0.99581 1.20946 0.99650 0.94403 0.99325 1.20943 0.95444 0.97262 1.00687 1.22329 0.99562 0.98250 0.97186 1.21540 0.99317 0.99422 0.93680 1.21820 0.98124 1.00585 0.99055 1.21773 0.99629 0.97314 1.00916 0.96128 0.91679 0.95385 0.89877 0.95159 0.93037 0.85459 0.92063 0.91488 0.86058 0.86898 0.87138 0.87074 0.87017 0.93321 0.92598 0.86058 0.94423 0.93220 0.92231 0.93377 0.93248 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.19 37.16 0.34 -2.85 16 2 C -0.10 -2.43 5.45 -26.73 -0.15 -2.58 16 3 C 0.21 4.73 1.02 -68.86 -0.07 4.66 16 4 H 0.03 0.84 3.72 -51.93 -0.19 0.64 16 5 C -0.52 -13.32 7.30 -34.44 -0.25 -13.57 16 6 H 0.06 1.40 7.37 -52.49 -0.39 1.01 16 7 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.58 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -12.94 5.13 -100.95 -0.52 -13.46 16 14 C 0.09 1.49 1.45 -67.71 -0.10 1.39 16 15 H 0.08 1.40 4.88 -51.93 -0.25 1.15 16 16 C -0.07 -1.04 5.03 -27.88 -0.14 -1.18 16 17 C -0.05 -0.75 3.35 -104.62 -0.35 -1.10 16 18 C -0.08 -1.27 9.02 -39.58 -0.36 -1.63 16 19 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 20 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 21 C -0.13 -1.71 10.05 -39.59 -0.40 -2.11 16 22 C -0.13 -1.79 8.73 -39.59 -0.35 -2.14 16 23 C -0.13 -2.09 4.13 -26.73 -0.11 -2.20 16 24 C -0.12 -2.14 2.38 -90.62 -0.22 -2.35 16 25 C -0.14 -2.41 8.31 37.16 0.31 -2.10 16 26 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.26 3.36 -51.93 -0.17 1.09 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 2.24 5.92 -51.93 -0.31 1.93 16 31 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.33 6.36 7.48 -39.29 -0.29 6.07 16 34 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 43 H 0.12 2.60 4.31 -51.93 -0.22 2.38 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.12 5.33 -51.93 -0.28 0.84 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -26.20 365.68 -10.20 -36.40 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -8.42 Total: 11.69 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: -2.38 Total: -32.30 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.11 Total: -37.04 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.20 -10.20 -36.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.541 kcal (2) G-P(sol) polarization free energy of solvation -26.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds