Wall clock time and date at job start Tue Mar 31 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 H 1.08994 * 109.47022 * 306.60381 * 3 2 1 5 5 C 1.50707 * 109.47008 * 186.60554 * 3 2 1 6 6 H 1.07998 * 119.99603 * 239.99779 * 5 3 2 7 7 C 1.37871 * 119.99793 * 59.99798 * 5 3 2 8 8 N 1.31515 * 120.00542 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47592 * 89.99693 * 9 7 5 11 11 H 1.48503 * 109.47120 * 210.00151 * 9 7 5 12 12 H 1.48505 * 109.46865 * 329.99589 * 9 7 5 13 13 N 1.46902 * 109.47168 * 66.60599 * 3 2 1 14 14 C 1.46897 * 110.99778 * 254.32369 * 13 3 2 15 15 H 1.09004 * 109.47305 * 33.33957 * 14 13 3 16 16 C 1.53000 * 109.47062 * 153.34206 * 14 13 3 17 17 C 1.50704 * 109.47036 * 294.99805 * 16 14 13 18 18 C 1.38236 * 119.99629 * 89.99598 * 17 16 14 19 19 C 1.38234 * 119.99607 * 180.02562 * 18 17 16 20 20 C 1.38230 * 120.00122 * 359.96679 * 19 18 17 21 21 C 1.38233 * 120.00080 * 0.27097 * 20 19 18 22 22 C 1.38226 * 120.00058 * 359.53465 * 21 20 19 23 23 C 1.52999 * 109.47293 * 273.34170 * 14 13 3 24 24 C 1.53000 * 109.47256 * 66.62703 * 23 14 13 25 25 C 1.52997 * 109.47211 * 65.60071 * 24 23 14 26 26 C 1.53003 * 109.47267 * 185.59977 * 24 23 14 27 27 H 1.08997 * 109.47512 * 183.95989 * 1 2 3 28 28 H 1.08998 * 109.47559 * 303.96812 * 1 2 3 29 29 H 1.09001 * 109.46850 * 63.96280 * 1 2 3 30 30 H 1.08993 * 109.47462 * 239.99271 * 2 1 3 31 31 H 1.09008 * 109.46997 * 119.99550 * 2 1 3 32 32 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99777 * 130.37262 * 13 3 2 34 34 H 1.09003 * 109.47109 * 175.00161 * 16 14 13 35 35 H 1.08996 * 109.47205 * 55.00282 * 16 14 13 36 36 H 1.07999 * 120.00129 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.99762 * 179.97438 * 19 18 17 38 38 H 1.08006 * 120.00188 * 179.97438 * 20 19 18 39 39 H 1.08009 * 120.00171 * 179.72750 * 21 20 19 40 40 H 1.07998 * 120.00355 * 180.20872 * 22 21 20 41 41 H 1.09000 * 109.47356 * 186.62763 * 23 14 13 42 42 H 1.09003 * 109.47369 * 306.62732 * 23 14 13 43 43 H 1.08999 * 109.46950 * 305.59905 * 24 23 14 44 44 H 1.08999 * 109.47300 * 60.00048 * 25 24 23 45 45 H 1.08995 * 109.47560 * 180.02562 * 25 24 23 46 46 H 1.09006 * 109.47309 * 300.00425 * 25 24 23 47 47 H 1.09000 * 109.46752 * 59.99955 * 26 24 23 48 48 H 1.08998 * 109.47212 * 179.97438 * 26 24 23 49 49 H 1.08999 * 109.47077 * 299.99850 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5834 1.9893 -0.8249 5 6 3.5382 1.4456 -0.1634 6 1 4.1637 1.8830 0.6006 7 6 4.1100 0.8901 -1.2883 8 7 3.3482 0.3570 -2.2184 9 14 5.9670 0.8933 -1.4906 10 1 6.5320 -0.3444 -0.8955 11 1 6.3075 0.9481 -2.9350 12 1 6.5379 2.0788 -0.8022 13 7 1.6847 2.0875 1.2711 14 6 0.5776 3.0356 1.0890 15 1 -0.0931 2.6664 0.3131 16 6 -0.1927 3.1788 2.4032 17 6 -0.8455 1.8651 2.7485 18 6 -0.1669 0.9367 3.5155 19 6 -0.7655 -0.2685 3.8318 20 6 -2.0429 -0.5449 3.3817 21 6 -2.7196 0.3815 2.6106 22 6 -2.1226 1.5883 2.2976 23 6 1.1361 4.3983 0.6741 24 6 1.7629 4.2904 -0.7174 25 6 0.6722 3.9845 -1.7458 26 6 2.4435 5.6135 -1.0742 27 1 -0.3634 -1.0252 0.0710 28 1 -0.3634 0.5742 0.8522 29 1 -0.3633 0.4511 -0.9234 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 3.7506 -0.0342 -3.0096 33 1 2.4862 2.5422 1.6823 34 1 -0.9580 3.9472 2.2939 35 1 0.4960 3.4626 3.1989 36 1 0.8310 1.1529 3.8676 37 1 -0.2351 -0.9941 4.4307 38 1 -2.5105 -1.4867 3.6284 39 1 -3.7160 0.1637 2.2552 40 1 -2.6526 2.3135 1.6980 41 1 0.3291 5.1307 0.6533 42 1 1.8945 4.7137 1.3907 43 1 2.5017 3.4890 -0.7219 44 1 -0.0666 4.7859 -1.7412 45 1 1.1187 3.9072 -2.7370 46 1 0.1872 3.0419 -1.4916 47 1 3.2206 5.8314 -0.3416 48 1 2.8904 5.5365 -2.0653 49 1 1.7047 6.4149 -1.0697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169061323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:00 Heat of formation + Delta-G solvation = -12.989970 kcal Electronic energy + Delta-G solvation = -24994.568330 eV Core-core repulsion = 21919.826749 eV Total energy + Delta-G solvation = -3074.741580 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43734 -39.12034 -36.18483 -34.92748 -33.45809 -32.11926 -31.52421 -29.99154 -28.02590 -27.59492 -26.88553 -24.53793 -23.23581 -22.77058 -21.28447 -21.25078 -20.40977 -18.39124 -17.43020 -17.00100 -16.38604 -16.01690 -15.78589 -15.23751 -15.20915 -15.18065 -14.64876 -14.28136 -14.09022 -13.88701 -13.72354 -13.47797 -13.35988 -13.10370 -12.98841 -12.95836 -12.84232 -12.61971 -12.49609 -12.41465 -12.13298 -11.88635 -11.86655 -11.63568 -11.56693 -11.37679 -11.32488 -11.05318 -10.87823 -10.62167 -10.36795 -9.56972 -9.26107 -8.64555 -8.00919 -6.12990 0.70622 0.76830 1.39715 1.42824 1.49678 2.45113 3.11984 3.24727 3.82830 3.95929 4.14381 4.21668 4.25285 4.28061 4.36555 4.47249 4.60964 4.67865 4.69223 4.76797 4.79302 4.83250 4.85797 4.89108 4.98272 5.01309 5.03274 5.05808 5.11165 5.13948 5.17419 5.27417 5.37167 5.41270 5.43779 5.49762 5.54544 5.60711 5.66929 5.78618 5.80879 5.84522 5.85627 5.92053 6.04827 6.14278 6.37446 6.41837 6.66909 7.04041 7.25932 7.55886 9.00452 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.006174 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.137807 B = 4534.368913 C = 5564.624208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C 0.219 3.781 4 H 0.023 0.977 5 C -0.526 4.526 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.939 3.061 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.094 3.906 15 H 0.059 0.941 16 C -0.066 4.066 17 C -0.063 4.063 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.139 4.139 21 C -0.131 4.131 22 C -0.135 4.135 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.134 4.134 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.014 0.986 32 H 0.256 0.744 33 H 0.326 0.674 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.039 0.961 47 H 0.051 0.949 48 H 0.039 0.961 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 6.241 8.383 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C 0.111 3.889 4 H 0.041 0.959 5 C -0.565 4.565 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.766 3.234 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.303 5.303 14 C -0.016 4.016 15 H 0.077 0.923 16 C -0.104 4.104 17 C -0.063 4.063 18 C -0.119 4.119 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.165 4.165 24 C -0.142 4.142 25 C -0.189 4.189 26 C -0.192 4.192 27 H 0.044 0.956 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.248 5.640 8.407 14.405 hybrid contribution 1.833 0.086 -1.110 2.145 sum -8.415 5.726 7.297 12.524 Atomic orbital electron populations 1.21844 0.97474 0.99422 1.00881 1.21357 0.93481 1.00119 0.98592 1.19114 0.92303 0.90747 0.86762 0.95910 1.21791 0.93572 1.37226 1.03920 0.93050 1.25497 1.00845 0.95380 0.96040 1.70019 1.35650 1.39724 1.09534 0.85855 0.82456 0.78274 0.76780 1.20965 1.21539 1.19358 1.60692 1.10130 1.32366 1.27076 1.21632 0.93505 0.90722 0.95762 0.92260 1.20657 0.98661 0.93760 0.97309 1.19802 0.93688 0.96712 0.96107 1.21048 0.98917 0.93893 0.98002 1.21315 0.95837 0.97249 1.00932 1.21281 0.95280 0.99951 0.99159 1.21283 1.00641 0.94080 0.98840 1.21201 0.95339 0.97974 1.00748 1.22236 1.00283 0.98121 0.95851 1.21447 0.98544 0.99089 0.95102 1.21746 0.98523 1.00572 0.98098 1.21719 1.00161 0.96840 1.00437 0.95622 0.89779 0.96022 0.93232 0.96678 0.93428 0.85621 0.89803 0.90890 0.86779 0.85865 0.85072 0.84873 0.85585 0.90835 0.92010 0.90224 0.91662 0.94837 0.94180 0.93019 0.94182 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.19 71.98 0.66 -5.22 16 2 C -0.10 -4.73 5.45 30.59 0.17 -4.56 16 3 C 0.22 10.18 1.02 44.17 0.05 10.23 16 4 H 0.02 1.15 3.72 -2.39 -0.01 1.14 16 5 C -0.53 -27.26 7.30 25.60 0.19 -27.07 16 6 H 0.05 2.64 7.37 -2.91 -0.02 2.62 16 7 C 0.02 1.17 5.28 84.65 0.45 1.62 16 8 N -0.91 -51.46 11.29 21.45 0.24 -51.22 16 9 Si 0.94 43.28 29.54 68.60 2.03 45.30 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 N -0.67 -25.53 5.13 -473.30 -2.43 -27.96 16 14 C 0.09 2.97 1.45 44.92 0.07 3.04 16 15 H 0.06 2.11 4.88 -2.39 -0.01 2.10 16 16 C -0.07 -1.72 5.03 29.85 0.15 -1.57 16 17 C -0.06 -1.78 3.35 -19.86 -0.07 -1.84 16 18 C -0.10 -2.99 9.02 22.27 0.20 -2.78 16 19 C -0.14 -3.75 10.05 22.27 0.22 -3.52 16 20 C -0.14 -3.52 10.05 22.27 0.22 -3.30 16 21 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 22 C -0.13 -3.54 8.73 22.27 0.19 -3.35 16 23 C -0.13 -3.64 4.13 30.59 0.13 -3.51 16 24 C -0.12 -4.22 2.38 -10.79 -0.03 -4.24 16 25 C -0.13 -4.51 8.31 71.98 0.60 -3.91 16 26 C -0.13 -3.95 9.19 71.98 0.66 -3.29 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 3.21 3.36 -2.39 -0.01 3.20 16 29 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 2.77 5.92 -2.39 -0.01 2.75 16 31 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.33 12.58 7.48 -89.69 -0.67 11.91 16 34 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 35 H 0.07 1.82 8.09 -2.39 -0.02 1.81 16 36 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 39 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.73 8.00 -2.39 -0.02 1.71 16 43 H 0.08 3.45 4.31 -2.39 -0.01 3.44 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.04 1.50 5.33 -2.38 -0.01 1.49 16 47 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -57.12 365.68 4.17 -52.95 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.24 Total: 37.24 kcal Atomic # 6 Polarization: -60.41 SS G_CDS: 4.08 Total: -56.32 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -2.19 Total: -79.17 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -57.12 4.17 -52.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.965 kcal (2) G-P(sol) polarization free energy of solvation -57.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds