Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47260 * 2 1 4 4 H 1.08995 * 109.47190 * 53.54171 * 3 2 1 5 5 C 1.50696 * 109.46886 * 173.54542 * 3 2 1 6 6 H 1.08006 * 119.99782 * 119.99552 * 5 3 2 7 7 C 1.37873 * 120.00183 * 299.99522 * 5 3 2 8 8 N 1.31515 * 119.99929 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00062 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47585 * 89.99670 * 9 7 5 11 11 H 1.48503 * 109.47274 * 209.99985 * 9 7 5 12 12 H 1.48498 * 109.46889 * 329.99534 * 9 7 5 13 13 N 1.46904 * 109.46688 * 293.54531 * 3 2 1 14 14 C 1.46894 * 110.99941 * 94.12329 * 13 3 2 15 15 H 1.09002 * 109.47446 * 328.32762 * 14 13 3 16 16 C 1.53000 * 109.46983 * 208.33035 * 14 13 3 17 17 C 1.50699 * 109.47414 * 64.99666 * 16 14 13 18 18 C 1.38228 * 119.99901 * 90.00423 * 17 16 14 19 19 C 1.38239 * 120.00024 * 180.28160 * 18 17 16 20 20 C 1.38230 * 119.99882 * 359.48235 * 19 18 17 21 21 C 1.38235 * 120.00193 * 0.51770 * 20 19 18 22 22 C 1.38235 * 120.00145 * 270.02403 * 17 16 14 23 23 C 1.52993 * 109.47323 * 88.32875 * 14 13 3 24 24 C 1.53000 * 109.47140 * 293.32634 * 23 14 13 25 25 C 1.52999 * 109.47071 * 175.20412 * 24 23 14 26 26 C 1.53002 * 109.46971 * 295.20129 * 24 23 14 27 27 H 1.08995 * 109.47245 * 185.36794 * 1 2 3 28 28 H 1.09003 * 109.47235 * 305.37716 * 1 2 3 29 29 H 1.09004 * 109.46394 * 65.36840 * 1 2 3 30 30 H 1.08998 * 109.47195 * 239.99045 * 2 1 3 31 31 H 1.09002 * 109.46145 * 119.99626 * 2 1 3 32 32 H 0.97004 * 119.99935 * 180.02562 * 8 7 5 33 33 H 1.00897 * 110.99601 * 218.07460 * 13 3 2 34 34 H 1.09002 * 109.47300 * 304.99802 * 16 14 13 35 35 H 1.08995 * 109.47282 * 185.00055 * 16 14 13 36 36 H 1.08001 * 120.00026 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.00160 * 179.72506 * 19 18 17 38 38 H 1.08005 * 120.00229 * 180.23646 * 20 19 18 39 39 H 1.07991 * 120.00137 * 179.72449 * 21 20 19 40 40 H 1.08001 * 119.99603 * 359.97438 * 22 17 16 41 41 H 1.09004 * 109.47107 * 53.32781 * 23 14 13 42 42 H 1.08999 * 109.47528 * 173.32573 * 23 14 13 43 43 H 1.08995 * 109.47200 * 55.20306 * 24 23 14 44 44 H 1.09006 * 109.47661 * 59.99973 * 25 24 23 45 45 H 1.09002 * 109.47219 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47328 * 299.99811 * 25 24 23 47 47 H 1.09006 * 109.47138 * 299.99645 * 26 24 23 48 48 H 1.08998 * 109.46908 * 59.99852 * 26 24 23 49 49 H 1.09002 * 109.47113 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5855 1.9886 0.8265 5 6 3.5385 1.4454 0.1597 6 1 4.1623 1.8834 -0.6055 7 6 4.1132 0.8890 1.2827 8 7 5.4210 0.8920 1.4222 9 14 3.0344 0.1309 2.6059 10 1 2.8207 -1.3078 2.3063 11 1 3.7003 0.2679 3.9261 12 1 1.7246 0.8299 2.6372 13 7 1.6816 2.0885 -1.2697 14 6 0.4143 2.8213 -1.1482 15 1 -0.2305 2.3154 -0.4296 16 6 -0.2798 2.8691 -2.5108 17 6 -0.6649 1.4730 -2.9277 18 6 -1.9001 0.9624 -2.5752 19 6 -2.2510 -0.3204 -2.9526 20 6 -1.3709 -1.0885 -3.6918 21 6 -0.1357 -0.5779 -4.0443 22 6 0.2173 0.7030 -3.6624 23 6 0.6935 4.2468 -0.6678 24 6 1.2343 4.2061 0.7629 25 6 1.6256 5.6189 1.2005 26 6 0.1547 3.6622 1.7009 27 1 -0.3633 -1.0231 0.0961 28 1 -0.3634 0.5950 0.8379 29 1 -0.3632 0.4283 -0.9342 30 1 1.8934 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 5.8253 0.5002 2.2122 33 1 2.4216 2.6962 -1.5877 34 1 0.3991 3.2946 -3.2498 35 1 -1.1748 3.4873 -2.4412 36 1 -2.5893 1.5640 -2.0013 37 1 -3.2143 -0.7210 -2.6734 38 1 -1.6466 -2.0893 -3.9899 39 1 0.5536 -1.1796 -4.6180 40 1 1.1823 1.1020 -3.9379 41 1 1.4306 4.7128 -1.3218 42 1 -0.2300 4.8254 -0.6908 43 1 2.1098 3.5580 0.8021 44 1 0.7500 6.2671 1.1614 45 1 2.0104 5.5900 2.2199 46 1 2.3947 6.0064 0.5323 47 1 -0.7208 4.3104 1.6617 48 1 -0.1241 2.6557 1.3890 49 1 0.5398 3.6337 2.7202 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169061324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = 8.597102 kcal Electronic energy + Delta-G solvation = -25141.484824 eV Core-core repulsion = 22067.679330 eV Total energy + Delta-G solvation = -3073.805495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41388 -38.00055 -34.78199 -33.62940 -31.90923 -31.01799 -30.51867 -28.75223 -26.87963 -26.31274 -25.82605 -22.51782 -22.22576 -21.66924 -20.14965 -19.90920 -19.23159 -16.70842 -16.44015 -15.86195 -14.96196 -14.82268 -14.64085 -14.14373 -13.93831 -13.65768 -13.15184 -13.09179 -12.96596 -12.68151 -12.52679 -12.45529 -12.17263 -11.96060 -11.86872 -11.79123 -11.38319 -11.27781 -11.07532 -10.85131 -10.83052 -10.64186 -10.46013 -10.33601 -10.22400 -10.06180 -9.84651 -9.61612 -9.26420 -8.89304 -8.59587 -8.52637 -8.19770 -7.28401 -6.08656 -4.07334 1.70637 1.77616 3.28608 3.38635 3.40198 4.13388 4.40097 4.97126 5.05370 5.19695 5.21259 5.28347 5.30685 5.35810 5.38648 5.45613 5.73993 5.80637 5.82299 5.83632 5.89415 5.98195 6.01292 6.04048 6.10127 6.15091 6.18330 6.20439 6.24803 6.31439 6.33761 6.37830 6.43223 6.51312 6.60700 6.73115 6.75423 6.79894 6.85064 6.86316 7.00622 7.02120 7.08359 7.12308 7.36244 7.51124 7.65976 8.05514 8.44518 8.66655 8.97859 9.55089 11.04115 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.006992 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.204915 B = 4003.811843 C = 5047.643971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.519 4.519 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.899 5.899 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.264 1.264 13 N -0.667 5.667 14 C 0.081 3.919 15 H 0.082 0.918 16 C -0.072 4.072 17 C -0.054 4.054 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.083 4.083 23 C -0.135 4.135 24 C -0.117 4.117 25 C -0.140 4.140 26 C -0.147 4.147 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.337 0.663 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.044 0.956 48 H 0.059 0.941 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 3.440 -6.560 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.150 4.150 3 C 0.068 3.932 4 H 0.046 0.954 5 C -0.557 4.557 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.229 1.229 12 H -0.189 1.189 13 N -0.298 5.298 14 C -0.030 4.030 15 H 0.100 0.900 16 C -0.110 4.110 17 C -0.054 4.054 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.175 4.175 24 C -0.135 4.135 25 C -0.198 4.198 26 C -0.204 4.204 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.130 2.826 -6.700 15.891 hybrid contribution -0.122 0.054 1.490 1.496 sum -14.252 2.880 -5.210 15.445 Atomic orbital electron populations 1.22180 0.98491 0.99469 1.01994 1.21833 0.93083 1.00025 1.00078 1.19836 0.95676 0.90498 0.87231 0.95440 1.21216 0.89669 1.38913 1.05878 0.90603 1.24910 0.94682 0.95430 0.97837 1.69896 1.09479 1.45544 1.28773 0.86909 0.80988 0.79994 0.80677 1.20696 1.22854 1.18874 1.60562 1.03333 1.33950 1.31948 1.21780 0.94177 0.92221 0.94818 0.90008 1.20689 0.99599 0.92672 0.98059 1.19685 0.93192 0.96423 0.96070 1.20941 0.96634 0.95912 1.00877 1.20957 0.99394 0.94674 0.99423 1.20995 0.94769 0.99388 0.99871 1.21114 0.96309 0.96035 1.00552 1.21009 0.98666 0.93740 0.96697 1.22337 1.00380 0.98167 0.96577 1.21445 1.00568 0.97420 0.94100 1.21783 1.00347 0.96632 1.01017 1.21934 0.98194 1.00913 0.99380 0.95129 0.94741 0.90318 0.92184 0.94369 0.92731 0.84459 0.91219 0.91883 0.86970 0.87026 0.87055 0.86732 0.85827 0.92122 0.92865 0.87423 0.93773 0.93098 0.92959 0.93670 0.92232 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.11 -2.48 5.09 -26.73 -0.14 -2.61 16 3 C 0.18 3.86 0.68 -68.86 -0.05 3.81 16 4 H 0.03 0.62 2.54 -51.93 -0.13 0.49 16 5 C -0.52 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.08 2.19 7.73 -52.48 -0.41 1.78 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 9 Si 0.88 22.04 24.42 -169.99 -4.15 17.89 16 10 H -0.28 -6.98 6.82 56.52 0.39 -6.59 16 11 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.67 -12.25 5.29 -100.96 -0.53 -12.79 16 14 C 0.08 1.24 1.45 -67.72 -0.10 1.14 16 15 H 0.08 1.36 3.62 -51.93 -0.19 1.17 16 16 C -0.07 -0.96 5.03 -27.88 -0.14 -1.10 16 17 C -0.05 -0.76 3.41 -104.63 -0.36 -1.11 16 18 C -0.13 -1.67 8.17 -39.58 -0.32 -2.00 16 19 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 20 C -0.13 -1.72 10.05 -39.59 -0.40 -2.12 16 21 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 22 C -0.08 -1.22 9.31 -39.58 -0.37 -1.59 16 23 C -0.14 -1.95 4.13 -26.73 -0.11 -2.06 16 24 C -0.12 -1.91 2.38 -90.62 -0.22 -2.12 16 25 C -0.14 -2.03 9.19 37.16 0.34 -1.69 16 26 C -0.15 -2.33 8.26 37.16 0.31 -2.02 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.64 6.89 -51.93 -0.36 0.28 16 29 H 0.08 1.37 2.91 -51.93 -0.15 1.21 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.04 0.91 3.22 -51.93 -0.17 0.75 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 33 H 0.34 6.39 7.62 -39.29 -0.30 6.09 16 34 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.06 0.86 7.99 -51.93 -0.42 0.45 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.11 2.17 5.03 -51.93 -0.26 1.91 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 1.01 4.50 -51.93 -0.23 0.78 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -28.40 355.99 -9.10 -37.50 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -8.13 Total: 10.75 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -2.42 Total: -32.47 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.24 Total: -39.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.15 Total: 17.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.40 -9.10 -37.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.097 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds