Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47260 * 2 1 4 4 H 1.08995 * 109.47190 * 53.54171 * 3 2 1 5 5 C 1.50696 * 109.46886 * 173.54542 * 3 2 1 6 6 H 1.08006 * 119.99782 * 119.99552 * 5 3 2 7 7 C 1.37873 * 120.00183 * 299.99522 * 5 3 2 8 8 N 1.31515 * 119.99929 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00062 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47585 * 89.99670 * 9 7 5 11 11 H 1.48503 * 109.47274 * 209.99985 * 9 7 5 12 12 H 1.48498 * 109.46889 * 329.99534 * 9 7 5 13 13 N 1.46904 * 109.46688 * 293.54531 * 3 2 1 14 14 C 1.46894 * 110.99941 * 94.12329 * 13 3 2 15 15 H 1.09002 * 109.47446 * 328.32762 * 14 13 3 16 16 C 1.53000 * 109.46983 * 208.33035 * 14 13 3 17 17 C 1.50699 * 109.47414 * 64.99666 * 16 14 13 18 18 C 1.38228 * 119.99901 * 90.00423 * 17 16 14 19 19 C 1.38239 * 120.00024 * 180.28160 * 18 17 16 20 20 C 1.38230 * 119.99882 * 359.48235 * 19 18 17 21 21 C 1.38235 * 120.00193 * 0.51770 * 20 19 18 22 22 C 1.38235 * 120.00145 * 270.02403 * 17 16 14 23 23 C 1.52993 * 109.47323 * 88.32875 * 14 13 3 24 24 C 1.53000 * 109.47140 * 293.32634 * 23 14 13 25 25 C 1.52999 * 109.47071 * 175.20412 * 24 23 14 26 26 C 1.53002 * 109.46971 * 295.20129 * 24 23 14 27 27 H 1.08995 * 109.47245 * 185.36794 * 1 2 3 28 28 H 1.09003 * 109.47235 * 305.37716 * 1 2 3 29 29 H 1.09004 * 109.46394 * 65.36840 * 1 2 3 30 30 H 1.08998 * 109.47195 * 239.99045 * 2 1 3 31 31 H 1.09002 * 109.46145 * 119.99626 * 2 1 3 32 32 H 0.97004 * 119.99935 * 180.02562 * 8 7 5 33 33 H 1.00897 * 110.99601 * 218.07460 * 13 3 2 34 34 H 1.09002 * 109.47300 * 304.99802 * 16 14 13 35 35 H 1.08995 * 109.47282 * 185.00055 * 16 14 13 36 36 H 1.08001 * 120.00026 * 0.02562 * 18 17 16 37 37 H 1.08002 * 120.00160 * 179.72506 * 19 18 17 38 38 H 1.08005 * 120.00229 * 180.23646 * 20 19 18 39 39 H 1.07991 * 120.00137 * 179.72449 * 21 20 19 40 40 H 1.08001 * 119.99603 * 359.97438 * 22 17 16 41 41 H 1.09004 * 109.47107 * 53.32781 * 23 14 13 42 42 H 1.08999 * 109.47528 * 173.32573 * 23 14 13 43 43 H 1.08995 * 109.47200 * 55.20306 * 24 23 14 44 44 H 1.09006 * 109.47661 * 59.99973 * 25 24 23 45 45 H 1.09002 * 109.47219 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.47328 * 299.99811 * 25 24 23 47 47 H 1.09006 * 109.47138 * 299.99645 * 26 24 23 48 48 H 1.08998 * 109.46908 * 59.99852 * 26 24 23 49 49 H 1.09002 * 109.47113 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5855 1.9886 0.8265 5 6 3.5385 1.4454 0.1597 6 1 4.1623 1.8834 -0.6055 7 6 4.1132 0.8890 1.2827 8 7 5.4210 0.8920 1.4222 9 14 3.0344 0.1309 2.6059 10 1 2.8207 -1.3078 2.3063 11 1 3.7003 0.2679 3.9261 12 1 1.7246 0.8299 2.6372 13 7 1.6816 2.0885 -1.2697 14 6 0.4143 2.8213 -1.1482 15 1 -0.2305 2.3154 -0.4296 16 6 -0.2798 2.8691 -2.5108 17 6 -0.6649 1.4730 -2.9277 18 6 -1.9001 0.9624 -2.5752 19 6 -2.2510 -0.3204 -2.9526 20 6 -1.3709 -1.0885 -3.6918 21 6 -0.1357 -0.5779 -4.0443 22 6 0.2173 0.7030 -3.6624 23 6 0.6935 4.2468 -0.6678 24 6 1.2343 4.2061 0.7629 25 6 1.6256 5.6189 1.2005 26 6 0.1547 3.6622 1.7009 27 1 -0.3633 -1.0231 0.0961 28 1 -0.3634 0.5950 0.8379 29 1 -0.3632 0.4283 -0.9342 30 1 1.8934 -0.5140 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 5.8253 0.5002 2.2122 33 1 2.4216 2.6962 -1.5877 34 1 0.3991 3.2946 -3.2498 35 1 -1.1748 3.4873 -2.4412 36 1 -2.5893 1.5640 -2.0013 37 1 -3.2143 -0.7210 -2.6734 38 1 -1.6466 -2.0893 -3.9899 39 1 0.5536 -1.1796 -4.6180 40 1 1.1823 1.1020 -3.9379 41 1 1.4306 4.7128 -1.3218 42 1 -0.2300 4.8254 -0.6908 43 1 2.1098 3.5580 0.8021 44 1 0.7500 6.2671 1.1614 45 1 2.0104 5.5900 2.2199 46 1 2.3947 6.0064 0.5323 47 1 -0.7208 4.3104 1.6617 48 1 -0.1241 2.6557 1.3890 49 1 0.5398 3.6337 2.7202 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169061324.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -6.523804 kcal Electronic energy + Delta-G solvation = -25142.140516 eV Core-core repulsion = 22067.679330 eV Total energy + Delta-G solvation = -3074.461186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59105 -39.23829 -36.35564 -34.94769 -33.87230 -32.33283 -31.53795 -30.20257 -28.08181 -28.04333 -26.92149 -24.33268 -23.25741 -22.85781 -21.55239 -21.29361 -20.63085 -18.65105 -17.65176 -17.28572 -16.43737 -16.06472 -15.85506 -15.45527 -15.33447 -15.02924 -14.78341 -14.54840 -14.12540 -14.03698 -13.97288 -13.79540 -13.53348 -13.46545 -13.08403 -13.00840 -12.88536 -12.59306 -12.53306 -12.40335 -12.15573 -11.95217 -11.87806 -11.71917 -11.61214 -11.45072 -11.30864 -11.13253 -10.95641 -10.79004 -10.68683 -9.57182 -9.28259 -8.78923 -8.28314 -6.28549 0.68375 0.74858 1.27708 1.31309 1.40977 2.30403 3.08118 3.09982 3.65109 3.88876 4.06985 4.14901 4.19618 4.23866 4.34962 4.45096 4.46629 4.47669 4.54241 4.63822 4.66297 4.71612 4.76207 4.81275 4.85894 4.94589 4.96486 5.01429 5.02111 5.08772 5.10622 5.13942 5.17314 5.23624 5.31433 5.39511 5.40752 5.45749 5.47323 5.53904 5.66243 5.71621 5.77887 5.81379 5.83823 6.00644 6.12998 6.35591 6.63291 6.81643 7.01780 7.38015 8.87903 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.006992 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.204915 B = 4003.811843 C = 5047.643971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.034 0.966 5 C -0.508 4.508 6 H 0.039 0.961 7 C 0.019 3.981 8 N -0.948 5.948 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.304 1.304 12 H -0.244 1.244 13 N -0.665 5.665 14 C 0.083 3.917 15 H 0.077 0.923 16 C -0.066 4.066 17 C -0.065 4.065 18 C -0.131 4.131 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.103 4.103 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.145 4.145 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.330 0.670 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.048 0.952 47 H 0.073 0.927 48 H 0.047 0.953 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.753 4.034 -6.559 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.051 0.949 5 C -0.547 4.547 6 H 0.057 0.943 7 C -0.179 4.179 8 N -0.589 5.589 9 Si 0.766 3.234 10 H -0.205 1.205 11 H -0.232 1.232 12 H -0.167 1.167 13 N -0.295 5.295 14 C -0.027 4.027 15 H 0.095 0.905 16 C -0.104 4.104 17 C -0.065 4.065 18 C -0.149 4.149 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.121 4.121 23 C -0.168 4.168 24 C -0.138 4.138 25 C -0.194 4.194 26 C -0.202 4.202 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.918 3.428 -6.716 19.440 hybrid contribution 1.071 -0.101 1.376 1.747 sum -16.847 3.327 -5.340 17.984 Atomic orbital electron populations 1.22122 0.95576 1.00527 1.03186 1.21766 0.95702 0.99243 0.98372 1.19611 0.92293 0.91171 0.89115 0.94875 1.21548 0.92185 1.36731 1.04234 0.94265 1.25638 0.95602 0.96430 1.00206 1.70037 1.11354 1.47764 1.29725 0.86024 0.80209 0.79325 0.77862 1.20546 1.23223 1.16735 1.60523 1.04459 1.34719 1.29831 1.21836 0.92300 0.92360 0.96236 0.90482 1.20649 1.00387 0.92894 0.96441 1.19804 0.93641 0.96722 0.96338 1.21210 0.96469 0.96401 1.00783 1.21303 1.00255 0.94503 0.98662 1.21288 0.94327 1.00397 0.99561 1.21314 0.97195 0.96010 1.00979 1.21064 0.98641 0.94536 0.97867 1.22262 1.01565 0.97776 0.95150 1.21379 0.99135 0.97585 0.95742 1.21745 1.01340 0.95934 1.00418 1.21915 0.98967 1.00831 0.98527 0.94056 0.94052 0.88747 0.93848 0.96145 0.92904 0.85170 0.91161 0.89244 0.85036 0.84639 0.85127 0.86151 0.87102 0.92175 0.89981 0.91989 0.91209 0.93829 0.93263 0.90763 0.93417 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 8.51 71.98 0.61 -4.97 16 2 C -0.11 -4.91 5.09 30.60 0.16 -4.75 16 3 C 0.19 8.23 0.68 44.17 0.03 8.26 16 4 H 0.03 1.47 2.54 -2.39 -0.01 1.46 16 5 C -0.51 -28.02 8.73 25.60 0.22 -27.79 16 6 H 0.04 2.39 7.73 -2.91 -0.02 2.37 16 7 C 0.02 1.07 5.45 84.65 0.46 1.53 16 8 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 9 Si 0.94 46.10 24.42 68.60 1.68 47.77 16 10 H -0.28 -13.55 6.82 99.48 0.68 -12.87 16 11 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 12 H -0.24 -11.03 6.53 99.48 0.65 -10.38 16 13 N -0.67 -24.33 5.29 -473.33 -2.50 -26.83 16 14 C 0.08 2.36 1.45 44.91 0.06 2.43 16 15 H 0.08 2.32 3.62 -2.39 -0.01 2.31 16 16 C -0.07 -1.57 5.03 29.85 0.15 -1.42 16 17 C -0.07 -1.69 3.41 -19.87 -0.07 -1.75 16 18 C -0.13 -3.03 8.17 22.27 0.18 -2.85 16 19 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 20 C -0.14 -3.25 10.05 22.27 0.22 -3.03 16 21 C -0.14 -3.65 10.05 22.27 0.22 -3.42 16 22 C -0.10 -2.94 9.31 22.27 0.21 -2.74 16 23 C -0.13 -3.37 4.13 30.59 0.13 -3.25 16 24 C -0.12 -3.72 2.38 -10.79 -0.03 -3.74 16 25 C -0.14 -3.70 9.19 71.98 0.66 -3.04 16 26 C -0.15 -4.21 8.26 71.98 0.59 -3.62 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.40 6.89 -2.39 -0.02 1.39 16 29 H 0.09 3.04 2.91 -2.39 -0.01 3.03 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.02 0.96 3.22 -2.39 -0.01 0.95 16 32 H 0.26 15.58 8.31 -92.71 -0.77 14.80 16 33 H 0.33 12.84 7.62 -89.70 -0.68 12.16 16 34 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 35 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 36 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 38 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 39 H 0.12 2.92 8.06 -2.92 -0.02 2.89 16 40 H 0.11 3.35 8.06 -2.91 -0.02 3.32 16 41 H 0.06 1.59 7.99 -2.39 -0.02 1.58 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 2.51 5.03 -2.39 -0.01 2.49 16 44 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.05 1.48 4.50 -2.39 -0.01 1.47 16 49 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -63.36 355.99 3.68 -59.68 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.16 Total: 35.21 kcal Atomic # 6 Polarization: -60.85 SS G_CDS: 4.05 Total: -56.80 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.21 Total: -85.87 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.68 Total: 47.77 kcal Total: -63.36 3.68 -59.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061324.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.161 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds