Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47244 * 2 1 4 4 H 1.09001 * 109.46953 * 305.52735 * 3 2 1 5 5 C 1.50698 * 109.47038 * 185.52812 * 3 2 1 6 6 H 1.08001 * 119.99490 * 239.99503 * 5 3 2 7 7 C 1.37874 * 120.00357 * 59.99828 * 5 3 2 8 8 N 1.31511 * 119.99507 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00194 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46799 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47109 * 119.99595 * 9 7 5 12 12 H 1.48497 * 109.46793 * 239.99916 * 9 7 5 13 13 N 1.46900 * 109.47223 * 65.52063 * 3 2 1 14 14 C 1.46895 * 111.00389 * 263.16998 * 13 3 2 15 15 H 1.09006 * 109.47372 * 15.79392 * 14 13 3 16 16 C 1.53005 * 109.47232 * 255.79905 * 14 13 3 17 17 C 1.50695 * 109.47249 * 64.99671 * 16 14 13 18 18 C 1.38234 * 120.00227 * 90.00046 * 17 16 14 19 19 C 1.38235 * 120.00276 * 180.25398 * 18 17 16 20 20 C 1.38234 * 119.99932 * 359.53803 * 19 18 17 21 21 C 1.38232 * 119.99958 * 0.41825 * 20 19 18 22 22 C 1.38237 * 120.00057 * 269.97913 * 17 16 14 23 23 C 1.52993 * 109.47273 * 135.79582 * 14 13 3 24 24 C 1.53004 * 109.47360 * 185.09359 * 23 14 13 25 25 C 1.52994 * 109.47198 * 64.47485 * 24 23 14 26 26 C 1.52998 * 109.47385 * 184.47719 * 24 23 14 27 27 H 1.08994 * 109.47028 * 174.26024 * 1 2 3 28 28 H 1.09003 * 109.47173 * 294.26391 * 1 2 3 29 29 H 1.08998 * 109.46888 * 54.25950 * 1 2 3 30 30 H 1.08992 * 109.46933 * 239.99658 * 2 1 3 31 31 H 1.08997 * 109.46906 * 119.99210 * 2 1 3 32 32 H 0.97008 * 119.99500 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99889 * 27.12905 * 13 3 2 34 34 H 1.09007 * 109.46750 * 304.99956 * 16 14 13 35 35 H 1.08995 * 109.47006 * 184.99944 * 16 14 13 36 36 H 1.08006 * 119.99727 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.00035 * 179.73071 * 19 18 17 38 38 H 1.07998 * 120.00061 * 180.21203 * 20 19 18 39 39 H 1.08002 * 120.00605 * 179.78752 * 21 20 19 40 40 H 1.07999 * 120.00133 * 0.02562 * 22 17 16 41 41 H 1.09002 * 109.47360 * 305.09407 * 23 14 13 42 42 H 1.09007 * 109.47141 * 65.09677 * 23 14 13 43 43 H 1.09004 * 109.46749 * 304.47730 * 24 23 14 44 44 H 1.09004 * 109.47281 * 174.17444 * 25 24 23 45 45 H 1.09005 * 109.47390 * 294.17436 * 25 24 23 46 46 H 1.09003 * 109.46947 * 54.17397 * 25 24 23 47 47 H 1.09006 * 109.46731 * 64.82869 * 26 24 23 48 48 H 1.08998 * 109.47134 * 184.81917 * 26 24 23 49 49 H 1.08997 * 109.47468 * 304.82759 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5408 1.4447 -0.1369 6 1 4.1528 1.8869 0.6353 7 6 4.1326 0.8821 -1.2479 8 7 3.3874 0.3432 -2.1879 9 14 5.9929 0.8842 -1.4171 10 1 6.5970 1.5458 -0.2327 11 1 6.4833 -0.5146 -1.5071 12 1 6.3772 1.6236 -2.6463 13 7 1.6623 2.0955 1.2605 14 6 0.4310 2.8801 1.0986 15 1 -0.0714 2.5821 0.1782 16 6 0.7798 4.3683 1.0303 17 6 1.5905 4.6378 -0.2112 18 6 0.9550 4.9694 -1.3932 19 6 1.6983 5.2114 -2.5332 20 6 3.0776 5.1313 -2.4890 21 6 3.7132 4.8006 -1.3068 22 6 2.9696 4.5539 -0.1679 23 6 -0.4951 2.6275 2.2899 24 6 -1.8277 3.3434 2.0608 25 6 -2.5332 2.7323 0.8486 26 6 -2.7118 3.1841 3.2993 27 1 -0.3633 -1.0225 -0.1028 28 1 -0.3634 0.4223 0.9369 29 1 -0.3633 0.6003 -0.8341 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8038 -0.0529 -2.9694 33 1 1.5652 1.4193 2.0031 34 1 1.3598 4.6463 1.9104 35 1 -0.1379 4.9555 0.9995 36 1 -0.1225 5.0349 -1.4270 37 1 1.2016 5.4662 -3.4578 38 1 3.6586 5.3238 -3.3789 39 1 4.7906 4.7346 -1.2730 40 1 3.4661 4.2947 0.7556 41 1 -0.6709 1.5567 2.3928 42 1 -0.0297 3.0083 3.1991 43 1 -1.6446 4.4025 1.8788 44 1 -3.5262 3.1702 0.7471 45 1 -1.9524 2.9364 -0.0510 46 1 -2.6236 1.6547 0.9859 47 1 -2.2489 3.6942 4.1441 48 1 -3.6918 3.6198 3.1046 49 1 -2.8245 2.1252 3.5316 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169061325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = -2.591137 kcal Electronic energy + Delta-G solvation = -24976.089602 eV Core-core repulsion = 21901.798949 eV Total energy + Delta-G solvation = -3074.290653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.98262 -37.48683 -35.44557 -33.14325 -31.70979 -30.32361 -30.03785 -28.56541 -27.06094 -25.88299 -25.67089 -22.78642 -21.77008 -21.17198 -20.34994 -19.79512 -19.04179 -16.27089 -16.00286 -15.26975 -15.12097 -14.56594 -14.30570 -14.10763 -13.98722 -13.37470 -13.23005 -12.88477 -12.67206 -12.60035 -12.45999 -12.25786 -12.10724 -11.82177 -11.53783 -11.45344 -11.22831 -11.06002 -11.02671 -10.83133 -10.70367 -10.58319 -10.33120 -10.30295 -10.15233 -9.96928 -9.84874 -9.63922 -9.50690 -8.88830 -8.24038 -8.02739 -7.80866 -7.04936 -5.86874 -3.86921 2.19223 2.28736 3.34651 3.43380 3.46738 4.51154 4.61337 4.89920 5.03948 5.06791 5.36674 5.44256 5.52813 5.59400 5.65443 5.70361 5.72921 5.77699 5.82975 5.89832 5.93105 5.98702 6.07475 6.14433 6.19152 6.19558 6.27922 6.30165 6.33998 6.38814 6.44201 6.45244 6.51444 6.60945 6.72905 6.87292 6.90402 6.92868 7.07831 7.22700 7.32587 7.37172 7.49478 7.57038 7.85212 7.86700 8.01833 8.44221 8.71831 8.74249 9.18519 9.76303 11.19568 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.006689 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.604438 B = 4185.122575 C = 5285.598723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.225 3.775 4 H 0.034 0.966 5 C -0.474 4.474 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.678 5.678 14 C 0.091 3.909 15 H 0.055 0.945 16 C -0.066 4.066 17 C -0.068 4.068 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.057 4.057 23 C -0.124 4.124 24 C -0.096 4.096 25 C -0.148 4.148 26 C -0.146 4.146 27 H 0.030 0.970 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.255 0.745 33 H 0.321 0.679 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 7.247 5.563 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C 0.117 3.883 4 H 0.052 0.948 5 C -0.513 4.513 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.308 5.308 14 C -0.019 4.019 15 H 0.073 0.927 16 C -0.104 4.104 17 C -0.068 4.068 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.145 4.145 21 C -0.127 4.127 22 C -0.075 4.075 23 C -0.162 4.162 24 C -0.115 4.115 25 C -0.206 4.206 26 C -0.203 4.203 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.340 7.696 5.287 12.520 hybrid contribution 0.394 -1.096 -0.479 1.259 sum -7.947 6.601 4.809 11.395 Atomic orbital electron populations 1.21975 0.99673 0.99197 0.99825 1.22282 0.91481 1.02616 1.02628 1.19242 0.95249 0.88091 0.85718 0.94795 1.21128 0.91162 1.34934 1.04078 0.92304 1.24853 0.97212 0.96002 0.96105 1.69875 1.34175 1.39957 1.09585 0.86688 0.86948 0.77407 0.77869 1.19835 1.21518 1.21327 1.60795 1.30526 1.29782 1.09650 1.21609 0.90191 0.93515 0.96597 0.92682 1.20705 0.97761 0.96464 0.95477 1.19645 0.94147 0.98328 0.94705 1.20814 0.98574 1.02123 0.93126 1.20826 0.94142 1.02384 0.97511 1.20900 0.94554 1.01599 0.97488 1.20964 0.99338 0.99145 0.93236 1.20857 0.93122 0.95018 0.98478 1.22083 0.94807 1.00083 0.99230 1.21151 0.95047 1.00343 0.94984 1.21896 0.99639 1.00750 0.98282 1.21843 0.99206 1.01489 0.97758 0.95111 0.94282 0.93967 0.88437 0.95028 0.93475 0.86144 0.91412 0.92384 0.87677 0.87572 0.87592 0.87353 0.86093 0.92064 0.91818 0.90987 0.93346 0.92232 0.92852 0.92947 0.93151 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.69 37.16 0.32 -2.56 16 2 C -0.15 -3.46 5.13 -26.73 -0.14 -3.59 16 3 C 0.22 5.24 1.22 -68.86 -0.08 5.15 16 4 H 0.03 0.91 6.77 -51.93 -0.35 0.56 16 5 C -0.47 -12.34 7.66 -34.44 -0.26 -12.60 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.47 16 8 N -0.90 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.88 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.68 -13.17 5.50 -100.95 -0.55 -13.73 16 14 C 0.09 1.50 1.04 -67.72 -0.07 1.43 16 15 H 0.06 1.02 4.45 -51.93 -0.23 0.79 16 16 C -0.07 -1.05 4.90 -27.88 -0.14 -1.18 16 17 C -0.07 -1.24 4.07 -104.63 -0.43 -1.67 16 18 C -0.13 -2.27 9.70 -39.58 -0.38 -2.65 16 19 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 20 C -0.13 -2.36 10.05 -39.59 -0.40 -2.76 16 21 C -0.11 -2.13 10.05 -39.58 -0.40 -2.52 16 22 C -0.06 -1.11 7.58 -39.58 -0.30 -1.41 16 23 C -0.12 -1.67 3.81 -26.73 -0.10 -1.78 16 24 C -0.10 -1.13 2.79 -90.62 -0.25 -1.38 16 25 C -0.15 -1.80 8.79 37.15 0.33 -1.47 16 26 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.67 5.19 -51.93 -0.27 0.40 16 29 H 0.04 0.84 7.85 -51.93 -0.41 0.43 16 30 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 31 H 0.03 0.71 8.01 -51.93 -0.42 0.30 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.32 6.07 7.59 -39.29 -0.30 5.77 16 34 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.06 0.81 6.21 -51.93 -0.32 0.49 16 36 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 41 H 0.06 0.86 6.38 -51.93 -0.33 0.53 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 43 H 0.07 0.84 6.27 -51.93 -0.33 0.51 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.80 6.73 -51.93 -0.35 0.45 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -27.29 370.53 -10.47 -37.76 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -8.65 Total: 10.05 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -2.45 Total: -31.36 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.07 Total: -38.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.29 -10.47 -37.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.168 kcal (2) G-P(sol) polarization free energy of solvation -27.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds