Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47244 * 2 1 4 4 H 1.09001 * 109.46953 * 305.52735 * 3 2 1 5 5 C 1.50698 * 109.47038 * 185.52812 * 3 2 1 6 6 H 1.08001 * 119.99490 * 239.99503 * 5 3 2 7 7 C 1.37874 * 120.00357 * 59.99828 * 5 3 2 8 8 N 1.31511 * 119.99507 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00194 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46799 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47109 * 119.99595 * 9 7 5 12 12 H 1.48497 * 109.46793 * 239.99916 * 9 7 5 13 13 N 1.46900 * 109.47223 * 65.52063 * 3 2 1 14 14 C 1.46895 * 111.00389 * 263.16998 * 13 3 2 15 15 H 1.09006 * 109.47372 * 15.79392 * 14 13 3 16 16 C 1.53005 * 109.47232 * 255.79905 * 14 13 3 17 17 C 1.50695 * 109.47249 * 64.99671 * 16 14 13 18 18 C 1.38234 * 120.00227 * 90.00046 * 17 16 14 19 19 C 1.38235 * 120.00276 * 180.25398 * 18 17 16 20 20 C 1.38234 * 119.99932 * 359.53803 * 19 18 17 21 21 C 1.38232 * 119.99958 * 0.41825 * 20 19 18 22 22 C 1.38237 * 120.00057 * 269.97913 * 17 16 14 23 23 C 1.52993 * 109.47273 * 135.79582 * 14 13 3 24 24 C 1.53004 * 109.47360 * 185.09359 * 23 14 13 25 25 C 1.52994 * 109.47198 * 64.47485 * 24 23 14 26 26 C 1.52998 * 109.47385 * 184.47719 * 24 23 14 27 27 H 1.08994 * 109.47028 * 174.26024 * 1 2 3 28 28 H 1.09003 * 109.47173 * 294.26391 * 1 2 3 29 29 H 1.08998 * 109.46888 * 54.25950 * 1 2 3 30 30 H 1.08992 * 109.46933 * 239.99658 * 2 1 3 31 31 H 1.08997 * 109.46906 * 119.99210 * 2 1 3 32 32 H 0.97008 * 119.99500 * 180.02562 * 8 7 5 33 33 H 1.00903 * 110.99889 * 27.12905 * 13 3 2 34 34 H 1.09007 * 109.46750 * 304.99956 * 16 14 13 35 35 H 1.08995 * 109.47006 * 184.99944 * 16 14 13 36 36 H 1.08006 * 119.99727 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.00035 * 179.73071 * 19 18 17 38 38 H 1.07998 * 120.00061 * 180.21203 * 20 19 18 39 39 H 1.08002 * 120.00605 * 179.78752 * 21 20 19 40 40 H 1.07999 * 120.00133 * 0.02562 * 22 17 16 41 41 H 1.09002 * 109.47360 * 305.09407 * 23 14 13 42 42 H 1.09007 * 109.47141 * 65.09677 * 23 14 13 43 43 H 1.09004 * 109.46749 * 304.47730 * 24 23 14 44 44 H 1.09004 * 109.47281 * 174.17444 * 25 24 23 45 45 H 1.09005 * 109.47390 * 294.17436 * 25 24 23 46 46 H 1.09003 * 109.46947 * 54.17397 * 25 24 23 47 47 H 1.09006 * 109.46731 * 64.82869 * 26 24 23 48 48 H 1.08998 * 109.47134 * 184.81917 * 26 24 23 49 49 H 1.08997 * 109.47468 * 304.82759 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5982 1.9841 -0.8364 5 6 3.5408 1.4447 -0.1369 6 1 4.1528 1.8869 0.6353 7 6 4.1326 0.8821 -1.2479 8 7 3.3874 0.3432 -2.1879 9 14 5.9929 0.8842 -1.4171 10 1 6.5970 1.5458 -0.2327 11 1 6.4833 -0.5146 -1.5071 12 1 6.3772 1.6236 -2.6463 13 7 1.6623 2.0955 1.2605 14 6 0.4310 2.8801 1.0986 15 1 -0.0714 2.5821 0.1782 16 6 0.7798 4.3683 1.0303 17 6 1.5905 4.6378 -0.2112 18 6 0.9550 4.9694 -1.3932 19 6 1.6983 5.2114 -2.5332 20 6 3.0776 5.1313 -2.4890 21 6 3.7132 4.8006 -1.3068 22 6 2.9696 4.5539 -0.1679 23 6 -0.4951 2.6275 2.2899 24 6 -1.8277 3.3434 2.0608 25 6 -2.5332 2.7323 0.8486 26 6 -2.7118 3.1841 3.2993 27 1 -0.3633 -1.0225 -0.1028 28 1 -0.3634 0.4223 0.9369 29 1 -0.3633 0.6003 -0.8341 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8038 -0.0529 -2.9694 33 1 1.5652 1.4193 2.0031 34 1 1.3598 4.6463 1.9104 35 1 -0.1379 4.9555 0.9995 36 1 -0.1225 5.0349 -1.4270 37 1 1.2016 5.4662 -3.4578 38 1 3.6586 5.3238 -3.3789 39 1 4.7906 4.7346 -1.2730 40 1 3.4661 4.2947 0.7556 41 1 -0.6709 1.5567 2.3928 42 1 -0.0297 3.0083 3.1991 43 1 -1.6446 4.4025 1.8788 44 1 -3.5262 3.1702 0.7471 45 1 -1.9524 2.9364 -0.0510 46 1 -2.6236 1.6547 0.9859 47 1 -2.2489 3.6942 4.1441 48 1 -3.6918 3.6198 3.1046 49 1 -2.8245 2.1252 3.5316 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169061325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -14.784994 kcal Electronic energy + Delta-G solvation = -24976.618367 eV Core-core repulsion = 21901.798949 eV Total energy + Delta-G solvation = -3074.819419 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.38250 -38.85081 -36.89939 -34.65440 -33.53042 -31.85442 -31.48380 -30.07171 -27.94876 -27.66963 -26.93059 -24.56832 -23.21434 -22.56154 -21.62462 -21.53195 -20.28630 -18.17254 -17.49886 -16.81402 -16.46989 -16.24340 -15.61096 -15.49025 -15.29030 -14.91461 -14.82159 -14.22822 -14.10619 -14.04001 -13.85466 -13.54242 -13.27447 -13.15052 -13.03962 -12.98203 -12.76125 -12.58563 -12.48260 -12.37715 -12.17223 -11.98336 -11.82021 -11.61763 -11.59865 -11.55529 -11.35348 -11.14512 -11.05173 -10.72356 -10.30847 -9.50324 -9.27669 -8.67001 -7.94769 -5.99588 0.74476 0.82978 1.38376 1.42748 1.51299 2.49812 3.15935 3.34722 3.70118 3.96557 4.06558 4.18888 4.25417 4.29460 4.36921 4.45201 4.47663 4.53562 4.59920 4.67464 4.74450 4.75213 4.79503 4.87353 4.89121 4.96254 5.04254 5.07559 5.09581 5.15759 5.19746 5.25496 5.26218 5.33545 5.40341 5.45353 5.45433 5.50544 5.59948 5.67428 5.70286 5.79482 5.87074 5.89855 6.02036 6.08426 6.43137 6.50380 6.88739 7.07869 7.14973 7.67626 9.09526 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.006689 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.604438 B = 4185.122575 C = 5285.598723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.243 3.757 4 H 0.000 1.000 5 C -0.472 4.472 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.929 3.071 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.679 5.679 14 C 0.097 3.903 15 H 0.038 0.962 16 C -0.062 4.062 17 C -0.075 4.075 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.074 4.074 23 C -0.115 4.115 24 C -0.092 4.092 25 C -0.148 4.148 26 C -0.142 4.142 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.252 0.748 33 H 0.326 0.674 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 7.982 6.695 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.187 4.187 3 C 0.135 3.865 4 H 0.017 0.983 5 C -0.511 4.511 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.563 5.563 9 Si 0.757 3.243 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.309 5.309 14 C -0.013 4.013 15 H 0.056 0.944 16 C -0.100 4.100 17 C -0.075 4.075 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.092 4.092 23 C -0.153 4.153 24 C -0.111 4.111 25 C -0.205 4.205 26 C -0.199 4.199 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.056 8.441 6.440 14.624 hybrid contribution 0.909 -1.292 -0.824 1.782 sum -9.147 7.149 5.617 12.896 Atomic orbital electron populations 1.21804 0.96752 1.00081 1.00569 1.22138 0.94102 1.01744 1.00753 1.18815 0.93418 0.88093 0.86204 0.98256 1.21346 0.92747 1.33670 1.03333 0.93419 1.25404 1.00246 0.96231 0.96200 1.70006 1.35265 1.41080 1.09964 0.85935 0.83453 0.77142 0.77721 1.19314 1.21537 1.21491 1.60659 1.32831 1.29479 1.07936 1.21581 0.89246 0.93196 0.97318 0.94416 1.20726 0.98544 0.96245 0.94440 1.19937 0.93833 0.97705 0.96026 1.21158 0.99879 1.01460 0.92871 1.21204 0.93982 1.01528 0.98700 1.21171 0.95417 1.01724 0.97684 1.21132 0.99568 1.00143 0.94009 1.20863 0.94044 0.96245 0.98060 1.21995 0.95208 1.00251 0.97890 1.21120 0.94124 1.00168 0.95670 1.21888 1.00330 1.00605 0.97679 1.21804 0.99442 1.01714 0.96982 0.93761 0.92039 0.95019 0.92020 0.95087 0.93891 0.85640 0.91201 0.89830 0.85370 0.85048 0.86063 0.87523 0.87330 0.92368 0.90978 0.90482 0.91712 0.93936 0.93381 0.92246 0.91975 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.69 71.98 0.63 -4.46 16 2 C -0.15 -6.82 5.13 30.60 0.16 -6.66 16 3 C 0.24 11.48 1.22 44.17 0.05 11.53 16 4 H 0.00 -0.02 6.77 -2.39 -0.02 -0.04 16 5 C -0.47 -24.99 7.66 25.60 0.20 -24.79 16 6 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.25 11.29 21.45 0.24 -53.01 16 9 Si 0.93 44.56 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 N -0.68 -26.08 5.50 -473.31 -2.60 -28.68 16 14 C 0.10 3.04 1.04 44.92 0.05 3.09 16 15 H 0.04 1.36 4.45 -2.38 -0.01 1.35 16 16 C -0.06 -1.86 4.90 29.85 0.15 -1.71 16 17 C -0.07 -2.69 4.07 -19.87 -0.08 -2.77 16 18 C -0.14 -4.64 9.70 22.27 0.22 -4.42 16 19 C -0.14 -4.69 10.05 22.27 0.22 -4.47 16 20 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 21 C -0.13 -5.21 10.05 22.27 0.22 -4.99 16 22 C -0.07 -2.95 7.58 22.27 0.17 -2.78 16 23 C -0.12 -2.83 3.81 30.59 0.12 -2.71 16 24 C -0.09 -1.86 2.79 -10.79 -0.03 -1.89 16 25 C -0.15 -3.20 8.79 71.98 0.63 -2.57 16 26 C -0.14 -2.38 9.19 71.98 0.66 -1.71 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 2.01 5.19 -2.39 -0.01 2.00 16 29 H 0.03 1.24 7.85 -2.39 -0.02 1.22 16 30 H 0.06 3.33 5.94 -2.39 -0.01 3.32 16 31 H 0.03 1.39 8.01 -2.39 -0.02 1.37 16 32 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 33 H 0.33 11.97 7.59 -89.69 -0.68 11.29 16 34 H 0.07 2.08 8.09 -2.38 -0.02 2.06 16 35 H 0.08 2.09 6.21 -2.39 -0.01 2.08 16 36 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 37 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 39 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.06 1.48 6.38 -2.39 -0.02 1.46 16 42 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.08 1.51 6.27 -2.38 -0.01 1.50 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.04 1.06 6.73 -2.38 -0.02 1.04 16 46 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -59.46 370.53 3.92 -55.54 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.22 Total: 34.57 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 4.03 Total: -55.01 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.36 Total: -81.68 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -59.46 3.92 -55.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169061325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -59.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds