Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46751 * 2 1 4 4 C 1.46906 * 110.99850 * 200.84446 * 3 2 1 5 5 C 1.50699 * 109.46870 * 71.93723 * 4 3 2 6 6 H 1.08003 * 120.00627 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99703 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99909 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47268 * 59.99819 * 9 7 5 11 11 H 1.48502 * 109.47269 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47293 * 299.99924 * 9 7 5 13 13 C 1.46893 * 111.00239 * 76.89156 * 3 2 1 14 14 H 1.09000 * 109.47459 * 329.60528 * 13 3 2 15 15 C 1.53005 * 109.46952 * 209.60957 * 13 3 2 16 16 C 1.50702 * 109.47315 * 63.80769 * 15 13 3 17 17 C 1.38229 * 120.00063 * 274.25660 * 16 15 13 18 18 C 1.38236 * 120.00150 * 179.76493 * 17 16 15 19 19 C 1.38240 * 119.99610 * 0.50335 * 18 17 16 20 20 C 1.38227 * 120.00150 * 359.74669 * 19 18 17 21 21 C 1.38235 * 119.99559 * 94.52207 * 16 15 13 22 22 C 1.52997 * 109.47313 * 89.61350 * 13 3 2 23 23 C 1.53011 * 109.46765 * 293.98647 * 22 13 3 24 24 C 1.52997 * 109.46958 * 297.25644 * 23 22 13 25 25 C 1.52999 * 109.46916 * 177.26184 * 23 22 13 26 26 H 1.09003 * 109.46916 * 184.90443 * 1 2 3 27 27 H 1.08998 * 109.47107 * 304.90264 * 1 2 3 28 28 H 1.09001 * 109.47227 * 64.90634 * 1 2 3 29 29 H 1.08999 * 109.47473 * 239.99970 * 2 1 3 30 30 H 1.09000 * 109.47403 * 119.99722 * 2 1 3 31 31 H 1.08996 * 109.47248 * 191.93585 * 4 3 2 32 32 H 1.08997 * 109.46976 * 311.94066 * 4 3 2 33 33 H 0.96996 * 120.00016 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47069 * 183.80821 * 15 13 3 35 35 H 1.08995 * 109.47275 * 303.80902 * 15 13 3 36 36 H 1.08000 * 120.00000 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00281 * 180.22748 * 18 17 16 38 38 H 1.07997 * 119.99562 * 179.72718 * 19 18 17 39 39 H 1.08000 * 120.00306 * 179.97438 * 20 19 18 40 40 H 1.07993 * 120.00665 * 0.02562 * 21 16 15 41 41 H 1.09000 * 109.47445 * 173.99363 * 22 13 3 42 42 H 1.08993 * 109.47635 * 53.98487 * 22 13 3 43 43 H 1.08998 * 109.46861 * 57.25767 * 23 22 13 44 44 H 1.09010 * 109.46837 * 60.00134 * 24 23 22 45 45 H 1.09006 * 109.47093 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47978 * 300.00309 * 24 23 22 47 47 H 1.09001 * 109.46733 * 180.02562 * 25 23 22 48 48 H 1.09005 * 109.47016 * 299.99483 * 25 23 22 49 49 H 1.08999 * 109.47232 * 59.99837 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4035 1.4542 -0.4880 5 6 3.4255 1.2011 -1.9734 6 1 2.5037 1.0086 -2.5022 7 6 4.6226 1.2153 -2.6575 8 7 5.7451 1.4503 -2.0137 9 14 4.6500 0.9009 -4.4987 10 1 3.8302 1.9290 -5.1887 11 1 6.0489 0.9709 -4.9920 12 1 4.0926 -0.4467 -4.7791 13 6 1.9018 1.9851 1.3356 14 1 1.0515 1.5461 1.8575 15 6 1.6928 3.4947 1.1999 16 6 0.3851 3.7598 0.4993 17 6 0.3319 3.7768 -0.8818 18 6 -0.8685 4.0152 -1.5245 19 6 -2.0138 4.2468 -0.7858 20 6 -1.9597 4.2349 0.5954 21 6 -0.7601 3.9913 1.2381 22 6 3.1817 1.7169 2.1299 23 6 3.3123 0.2156 2.3948 24 6 2.1382 -0.2545 3.2557 25 6 4.6258 -0.0602 3.1293 26 1 -0.3633 -1.0239 0.0879 27 1 -0.3633 0.5880 0.8428 28 1 -0.3634 0.4358 -0.9307 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8124 2.4433 -0.2819 32 1 4.0053 0.6994 0.0181 33 1 6.5872 1.4599 -2.4949 34 1 1.6730 3.9493 2.1904 35 1 2.5094 3.9238 0.6194 36 1 1.2276 3.6006 -1.4589 37 1 -0.9108 4.0249 -2.6036 38 1 -2.9508 4.4374 -1.2878 39 1 -2.8543 4.4162 1.1725 40 1 -0.7177 3.9827 2.3171 41 1 3.1388 2.2508 3.0792 42 1 4.0432 2.0612 1.5579 43 1 3.3062 -0.3224 1.4468 44 1 1.2023 -0.0579 2.7323 45 1 2.2310 -1.3241 3.4440 46 1 2.1442 0.2836 4.2036 47 1 4.7191 -1.1298 3.3176 48 1 5.4624 0.2746 2.5160 49 1 4.6319 0.4778 4.0772 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169077369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = 12.698632 kcal Electronic energy + Delta-G solvation = -24825.923555 eV Core-core repulsion = 21752.295916 eV Total energy + Delta-G solvation = -3073.627639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.40669 -38.19939 -34.50405 -33.06444 -32.42457 -30.42769 -30.30222 -28.75001 -26.88366 -25.91327 -25.73484 -22.53985 -22.31817 -22.01745 -20.72546 -19.53079 -18.67907 -16.70724 -16.27241 -15.21756 -14.88260 -14.73191 -14.53967 -14.20969 -13.93572 -13.75999 -13.35178 -12.95495 -12.91622 -12.57048 -12.50888 -12.29503 -12.02537 -11.94509 -11.62682 -11.49196 -11.27231 -11.05974 -11.01129 -10.82814 -10.80638 -10.68394 -10.47518 -10.37618 -10.31389 -10.12574 -10.08879 -9.75966 -9.37460 -9.09669 -8.44152 -8.37851 -8.14201 -6.98069 -5.98552 -3.98772 1.82975 1.91536 3.34321 3.38862 3.41795 4.27500 4.45166 4.94686 5.12363 5.26484 5.28377 5.32921 5.36152 5.37090 5.43975 5.58761 5.76258 5.78969 5.82865 5.90532 5.94989 5.98955 6.01821 6.07275 6.09059 6.11754 6.16728 6.19771 6.29677 6.36029 6.40829 6.42560 6.45768 6.58812 6.63892 6.67860 6.82133 6.82444 6.86151 6.88409 6.95148 7.04286 7.26197 7.36234 7.49081 7.53186 7.88755 8.21205 8.34633 8.66550 9.10310 9.65348 11.11398 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.007249 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.142742 B = 3861.582287 C = 5599.277447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 N -0.521 5.521 4 C 0.193 3.807 5 C -0.503 4.503 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.088 3.912 14 H 0.068 0.932 15 C -0.072 4.072 16 C -0.054 4.054 17 C -0.076 4.076 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.132 4.132 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.107 4.107 24 C -0.147 4.147 25 C -0.143 4.143 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.027 0.973 32 H -0.001 1.001 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.082 1.596 8.802 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 N -0.245 5.245 4 C 0.068 3.932 5 C -0.542 4.542 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.021 4.021 14 H 0.086 0.914 15 C -0.110 4.110 16 C -0.054 4.054 17 C -0.094 4.094 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.183 4.183 23 C -0.125 4.125 24 C -0.204 4.204 25 C -0.200 4.200 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.017 0.983 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.172 1.882 8.446 13.355 hybrid contribution 0.609 -0.659 -0.513 1.033 sum -9.564 1.223 7.933 12.486 Atomic orbital electron populations 1.21752 0.96949 0.99340 1.01645 1.22285 0.94151 0.90996 1.01309 1.62218 1.25649 1.16566 1.20046 1.19775 0.82334 0.96415 0.94693 1.21186 0.92734 1.47183 0.93079 0.92151 1.24942 0.95664 0.95743 0.98092 1.69936 0.97883 1.50228 1.35822 0.86671 0.76733 0.78742 0.85885 1.20309 1.21533 1.20453 1.21661 0.96129 0.93683 0.90659 0.91376 1.20660 0.94824 0.96580 0.98886 1.19748 0.94737 0.97035 0.93906 1.21254 0.98339 0.95524 0.94250 1.21148 0.93112 1.00580 0.99540 1.20978 0.97974 1.02228 0.94127 1.20918 0.97340 1.02217 0.94573 1.20963 0.92778 1.01878 0.99063 1.22362 1.00595 0.95477 0.99890 1.21388 0.94359 0.96966 0.99780 1.21941 0.98814 1.00207 0.99468 1.21793 0.97888 1.00495 0.99834 0.94091 0.93716 0.92679 0.90502 0.94306 0.95476 0.98305 0.93058 0.92143 0.90559 0.84734 0.86824 0.87259 0.87244 0.87159 0.93085 0.90093 0.89340 0.92320 0.93435 0.93340 0.93435 0.92374 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 10.07 37.16 0.37 -1.88 16 2 C 0.04 0.75 4.73 -3.82 -0.02 0.73 16 3 N -0.52 -10.11 3.34 -228.08 -0.76 -10.87 16 4 C 0.19 4.58 3.13 -4.97 -0.02 4.57 16 5 C -0.50 -13.42 8.33 -34.44 -0.29 -13.71 16 6 H 0.06 1.63 7.71 -52.48 -0.40 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.09 1.47 1.58 -67.72 -0.11 1.36 16 14 H 0.07 1.10 4.60 -51.93 -0.24 0.86 16 15 C -0.07 -1.15 4.96 -27.88 -0.14 -1.29 16 16 C -0.05 -0.87 5.00 -104.63 -0.52 -1.39 16 17 C -0.08 -1.30 9.06 -39.59 -0.36 -1.66 16 18 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 19 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 20 C -0.13 -1.78 10.05 -39.58 -0.40 -2.17 16 21 C -0.13 -1.83 9.68 -39.58 -0.38 -2.22 16 22 C -0.14 -2.37 3.65 -26.73 -0.10 -2.47 16 23 C -0.11 -1.68 2.00 -90.62 -0.18 -1.86 16 24 C -0.15 -1.97 8.19 37.16 0.30 -1.67 16 25 C -0.14 -2.09 9.19 37.16 0.34 -1.75 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.70 6.84 -51.93 -0.36 0.35 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.61 7.04 -51.93 -0.37 1.24 16 30 H 0.04 0.68 3.38 -51.93 -0.18 0.50 16 31 H 0.03 0.70 6.35 -51.93 -0.33 0.37 16 32 H 0.00 -0.02 5.75 -51.93 -0.30 -0.32 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.08 1.37 7.32 -51.93 -0.38 0.99 16 36 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.56 5.89 -51.93 -0.31 1.26 16 43 H 0.09 1.63 4.04 -51.93 -0.21 1.42 16 44 H 0.06 0.80 5.54 -51.92 -0.29 0.52 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -27.41 368.92 -10.27 -37.68 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.40 Total: 4.95 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -2.38 Total: -28.54 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.02 Total: -36.02 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.41 -10.27 -37.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.376 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds