Wall clock time and date at job start Tue Mar 31 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.46751 * 2 1 4 4 C 1.46906 * 110.99850 * 200.84446 * 3 2 1 5 5 C 1.50699 * 109.46870 * 71.93723 * 4 3 2 6 6 H 1.08003 * 120.00627 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99703 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99909 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47268 * 59.99819 * 9 7 5 11 11 H 1.48502 * 109.47269 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47293 * 299.99924 * 9 7 5 13 13 C 1.46893 * 111.00239 * 76.89156 * 3 2 1 14 14 H 1.09000 * 109.47459 * 329.60528 * 13 3 2 15 15 C 1.53005 * 109.46952 * 209.60957 * 13 3 2 16 16 C 1.50702 * 109.47315 * 63.80769 * 15 13 3 17 17 C 1.38229 * 120.00063 * 274.25660 * 16 15 13 18 18 C 1.38236 * 120.00150 * 179.76493 * 17 16 15 19 19 C 1.38240 * 119.99610 * 0.50335 * 18 17 16 20 20 C 1.38227 * 120.00150 * 359.74669 * 19 18 17 21 21 C 1.38235 * 119.99559 * 94.52207 * 16 15 13 22 22 C 1.52997 * 109.47313 * 89.61350 * 13 3 2 23 23 C 1.53011 * 109.46765 * 293.98647 * 22 13 3 24 24 C 1.52997 * 109.46958 * 297.25644 * 23 22 13 25 25 C 1.52999 * 109.46916 * 177.26184 * 23 22 13 26 26 H 1.09003 * 109.46916 * 184.90443 * 1 2 3 27 27 H 1.08998 * 109.47107 * 304.90264 * 1 2 3 28 28 H 1.09001 * 109.47227 * 64.90634 * 1 2 3 29 29 H 1.08999 * 109.47473 * 239.99970 * 2 1 3 30 30 H 1.09000 * 109.47403 * 119.99722 * 2 1 3 31 31 H 1.08996 * 109.47248 * 191.93585 * 4 3 2 32 32 H 1.08997 * 109.46976 * 311.94066 * 4 3 2 33 33 H 0.96996 * 120.00016 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47069 * 183.80821 * 15 13 3 35 35 H 1.08995 * 109.47275 * 303.80902 * 15 13 3 36 36 H 1.08000 * 120.00000 * 359.97438 * 17 16 15 37 37 H 1.08000 * 120.00281 * 180.22748 * 18 17 16 38 38 H 1.07997 * 119.99562 * 179.72718 * 19 18 17 39 39 H 1.08000 * 120.00306 * 179.97438 * 20 19 18 40 40 H 1.07993 * 120.00665 * 0.02562 * 21 16 15 41 41 H 1.09000 * 109.47445 * 173.99363 * 22 13 3 42 42 H 1.08993 * 109.47635 * 53.98487 * 22 13 3 43 43 H 1.08998 * 109.46861 * 57.25767 * 23 22 13 44 44 H 1.09010 * 109.46837 * 60.00134 * 24 23 22 45 45 H 1.09006 * 109.47093 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47978 * 300.00309 * 24 23 22 47 47 H 1.09001 * 109.46733 * 180.02562 * 25 23 22 48 48 H 1.09005 * 109.47016 * 299.99483 * 25 23 22 49 49 H 1.08999 * 109.47232 * 59.99837 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4035 1.4542 -0.4880 5 6 3.4255 1.2011 -1.9734 6 1 2.5037 1.0086 -2.5022 7 6 4.6226 1.2153 -2.6575 8 7 5.7451 1.4503 -2.0137 9 14 4.6500 0.9009 -4.4987 10 1 3.8302 1.9290 -5.1887 11 1 6.0489 0.9709 -4.9920 12 1 4.0926 -0.4467 -4.7791 13 6 1.9018 1.9851 1.3356 14 1 1.0515 1.5461 1.8575 15 6 1.6928 3.4947 1.1999 16 6 0.3851 3.7598 0.4993 17 6 0.3319 3.7768 -0.8818 18 6 -0.8685 4.0152 -1.5245 19 6 -2.0138 4.2468 -0.7858 20 6 -1.9597 4.2349 0.5954 21 6 -0.7601 3.9913 1.2381 22 6 3.1817 1.7169 2.1299 23 6 3.3123 0.2156 2.3948 24 6 2.1382 -0.2545 3.2557 25 6 4.6258 -0.0602 3.1293 26 1 -0.3633 -1.0239 0.0879 27 1 -0.3633 0.5880 0.8428 28 1 -0.3634 0.4358 -0.9307 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8124 2.4433 -0.2819 32 1 4.0053 0.6994 0.0181 33 1 6.5872 1.4599 -2.4949 34 1 1.6730 3.9493 2.1904 35 1 2.5094 3.9238 0.6194 36 1 1.2276 3.6006 -1.4589 37 1 -0.9108 4.0249 -2.6036 38 1 -2.9508 4.4374 -1.2878 39 1 -2.8543 4.4162 1.1725 40 1 -0.7177 3.9827 2.3171 41 1 3.1388 2.2508 3.0792 42 1 4.0432 2.0612 1.5579 43 1 3.3062 -0.3224 1.4468 44 1 1.2023 -0.0579 2.7323 45 1 2.2310 -1.3241 3.4440 46 1 2.1442 0.2836 4.2036 47 1 4.7191 -1.1298 3.3176 48 1 5.4624 0.2746 2.5160 49 1 4.6319 0.4778 4.0772 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169077369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:27 Heat of formation + Delta-G solvation = 0.617166 kcal Electronic energy + Delta-G solvation = -24826.447447 eV Core-core repulsion = 21752.295916 eV Total energy + Delta-G solvation = -3074.151531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77576 -39.45173 -35.92947 -34.76636 -34.06600 -31.78474 -31.51959 -30.33396 -28.02272 -27.74078 -26.99414 -24.37665 -23.71134 -23.19249 -21.99662 -20.81308 -20.18719 -18.66038 -17.43288 -16.88076 -16.49298 -16.14974 -15.94479 -15.53563 -15.36830 -15.14362 -14.67485 -14.36601 -14.24159 -14.03412 -13.88053 -13.69355 -13.47773 -13.07211 -13.03769 -12.95070 -12.71830 -12.66037 -12.56378 -12.35908 -12.31524 -12.11479 -11.91338 -11.88211 -11.74639 -11.61421 -11.43643 -11.19513 -11.03229 -10.90102 -10.52664 -9.59692 -9.33263 -8.60956 -8.12799 -6.21044 0.68127 0.75252 1.38336 1.40043 1.47654 2.41435 3.10246 3.17999 3.43221 3.83635 4.02076 4.10696 4.17823 4.22876 4.34091 4.34873 4.42490 4.48470 4.62846 4.63168 4.69727 4.72491 4.74572 4.81745 4.85844 4.89562 4.94285 5.01355 5.02031 5.08541 5.09502 5.14023 5.23258 5.27246 5.32566 5.37199 5.41319 5.43243 5.44632 5.51757 5.61144 5.63307 5.74838 5.76853 5.85216 6.06423 6.22392 6.36597 6.59840 6.89140 6.98743 7.47865 8.95414 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.007249 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.142742 B = 3861.582287 C = 5599.277447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.040 3.960 3 N -0.521 5.521 4 C 0.220 3.780 5 C -0.513 4.513 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.092 3.908 14 H 0.088 0.912 15 C -0.068 4.068 16 C -0.067 4.067 17 C -0.101 4.101 18 C -0.138 4.138 19 C -0.133 4.133 20 C -0.126 4.126 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.107 4.107 24 C -0.139 4.139 25 C -0.139 4.139 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.053 0.947 31 H -0.003 1.003 32 H -0.024 1.024 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 1.435 10.621 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.088 4.088 3 N -0.245 5.245 4 C 0.094 3.906 5 C -0.552 4.552 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.197 1.197 13 C -0.017 4.017 14 H 0.105 0.895 15 C -0.106 4.106 16 C -0.067 4.067 17 C -0.120 4.120 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.177 4.177 23 C -0.125 4.125 24 C -0.196 4.196 25 C -0.196 4.196 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.015 0.985 32 H -0.007 1.007 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.048 0.952 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.193 1.717 10.266 16.805 hybrid contribution 1.506 -0.576 -1.047 1.923 sum -11.688 1.141 9.218 14.929 Atomic orbital electron populations 1.21622 0.94497 1.00931 1.01234 1.22295 0.95977 0.90111 1.00374 1.62137 1.22502 1.17525 1.22347 1.19261 0.84474 0.93640 0.93211 1.21508 0.92433 1.46534 0.94723 0.92922 1.25727 0.95349 0.95643 1.02482 1.70065 0.98356 1.51410 1.37469 0.85680 0.76856 0.78844 0.80684 1.19806 1.21050 1.19664 1.21731 0.96805 0.94054 0.89092 0.89454 1.20625 0.94138 0.96000 0.99834 1.19742 0.95412 0.98111 0.93391 1.21030 0.97749 0.98187 0.94996 1.21266 0.93238 1.00994 1.00061 1.21301 0.98155 1.00924 0.94660 1.21338 0.98182 1.00325 0.94572 1.21227 0.92119 1.00820 1.00296 1.22271 0.98697 0.96466 1.00304 1.21332 0.96329 0.95855 0.98999 1.21860 0.97029 1.01124 0.99557 1.21753 0.96278 1.01526 1.00058 0.91685 0.92599 0.94238 0.93844 0.92922 0.98537 1.00668 0.93087 0.89342 0.93920 0.88848 0.86524 0.84499 0.83833 0.84562 0.90537 0.94155 0.92703 0.92422 0.92342 0.91382 0.92208 0.95157 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 10.07 71.98 0.72 -3.17 16 2 C 0.04 1.51 4.73 86.30 0.41 1.92 16 3 N -0.52 -21.18 3.34 -875.53 -2.92 -24.10 16 4 C 0.22 11.29 3.13 85.56 0.27 11.56 16 5 C -0.51 -29.06 8.33 25.60 0.21 -28.85 16 6 H 0.05 3.00 7.71 -2.91 -0.02 2.97 16 7 C 0.01 0.32 5.46 84.66 0.46 0.79 16 8 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 9 Si 0.95 45.36 29.54 68.60 2.03 47.39 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.09 3.06 1.58 44.92 0.07 3.13 16 14 H 0.09 2.61 4.60 -2.39 -0.01 2.60 16 15 C -0.07 -2.20 4.96 29.85 0.15 -2.05 16 16 C -0.07 -2.10 5.00 -19.87 -0.10 -2.20 16 17 C -0.10 -3.62 9.06 22.27 0.20 -3.41 16 18 C -0.14 -4.20 10.05 22.27 0.22 -3.97 16 19 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 20 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 21 C -0.13 -3.20 9.68 22.27 0.22 -2.99 16 22 C -0.14 -4.60 3.65 30.60 0.11 -4.49 16 23 C -0.11 -3.33 2.00 -10.79 -0.02 -3.35 16 24 C -0.14 -3.32 8.19 71.98 0.59 -2.73 16 25 C -0.14 -4.03 9.19 71.98 0.66 -3.37 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.61 6.84 -2.39 -0.02 1.59 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.90 7.04 -2.39 -0.02 1.89 16 30 H 0.05 1.84 3.38 -2.39 -0.01 1.84 16 31 H 0.00 -0.19 6.35 -2.39 -0.02 -0.21 16 32 H -0.02 -1.35 5.75 -2.39 -0.01 -1.36 16 33 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.09 2.32 8.06 -2.38 -0.02 2.30 16 35 H 0.04 1.65 7.32 -2.39 -0.02 1.63 16 36 H 0.09 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.04 1.67 5.89 -2.39 -0.01 1.65 16 43 H 0.05 2.09 4.04 -2.39 -0.01 2.08 16 44 H 0.06 1.39 5.54 -2.38 -0.01 1.38 16 45 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -63.49 368.92 4.92 -58.58 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.90 Total: 23.11 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 4.63 Total: -48.90 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.64 Total: -80.18 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -63.49 4.92 -58.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.196 kcal (2) G-P(sol) polarization free energy of solvation -63.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds