Wall clock time and date at job start Tue Mar 31 2020 06:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47161 * 2 1 4 4 C 1.46901 * 110.99708 * 196.16911 * 3 2 1 5 5 C 1.50700 * 109.47416 * 72.49170 * 4 3 2 6 6 H 1.07997 * 119.99722 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00138 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46974 * 120.00137 * 9 7 5 12 12 H 1.48496 * 109.47271 * 240.00167 * 9 7 5 13 13 C 1.46900 * 110.99895 * 72.21747 * 3 2 1 14 14 H 1.09002 * 109.47279 * 148.79632 * 13 3 2 15 15 C 1.53012 * 109.46709 * 268.79128 * 13 3 2 16 16 C 1.50693 * 109.47120 * 293.83902 * 15 13 3 17 17 C 1.38239 * 120.00164 * 86.26261 * 16 15 13 18 18 C 1.38232 * 120.00110 * 179.97438 * 17 16 15 19 19 C 1.38229 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.38235 * 120.00166 * 0.27980 * 19 18 17 21 21 C 1.38232 * 119.99501 * 359.51359 * 20 19 18 22 22 C 1.52994 * 109.47200 * 28.78926 * 13 3 2 23 23 C 1.53001 * 109.46989 * 65.91190 * 22 13 3 24 24 C 1.52996 * 109.47244 * 62.87801 * 23 22 13 25 25 C 1.53003 * 109.46783 * 182.87560 * 23 22 13 26 26 H 1.09001 * 109.47008 * 50.11104 * 1 2 3 27 27 H 1.09003 * 109.46901 * 170.10927 * 1 2 3 28 28 H 1.08999 * 109.47246 * 290.11224 * 1 2 3 29 29 H 1.08998 * 109.46863 * 239.99698 * 2 1 3 30 30 H 1.09003 * 109.47226 * 120.00210 * 2 1 3 31 31 H 1.09005 * 109.46641 * 192.49248 * 4 3 2 32 32 H 1.09003 * 109.47320 * 312.48539 * 4 3 2 33 33 H 0.97002 * 119.99720 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46661 * 173.84257 * 15 13 3 35 35 H 1.09002 * 109.47026 * 53.83892 * 15 13 3 36 36 H 1.08000 * 119.99707 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.99654 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.99837 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.00344 * 179.72333 * 20 19 18 40 40 H 1.08006 * 120.00179 * 180.27859 * 21 20 19 41 41 H 1.09003 * 109.46775 * 185.91041 * 22 13 3 42 42 H 1.08998 * 109.47333 * 305.90870 * 22 13 3 43 43 H 1.08994 * 109.47144 * 302.87541 * 23 22 13 44 44 H 1.09000 * 109.47737 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47112 * 300.00224 * 24 23 22 46 46 H 1.09003 * 109.47544 * 59.99865 * 24 23 22 47 47 H 1.08997 * 109.47380 * 60.00325 * 25 23 22 48 48 H 1.09005 * 109.46889 * 179.97438 * 25 23 22 49 49 H 1.09003 * 109.47166 * 299.99621 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4370 1.4422 -0.3819 5 6 3.5717 1.1623 -1.8566 6 1 2.6924 0.9615 -2.4505 7 6 4.8174 1.1624 -2.4474 8 7 5.8883 1.4064 -1.7239 9 14 4.9844 0.8148 -4.2750 10 1 3.6401 0.5725 -4.8577 11 1 5.6110 1.9821 -4.9458 12 1 5.8346 -0.3862 -4.4749 13 6 1.8003 2.0209 1.3059 14 1 2.5882 2.7508 1.4916 15 6 0.4419 2.7252 1.3084 16 6 0.4697 3.8736 0.3331 17 6 0.1775 3.6553 -1.0003 18 6 0.2025 4.7089 -1.8948 19 6 0.5192 5.9809 -1.4560 20 6 0.8165 6.1983 -0.1236 21 6 0.7873 5.1455 0.7717 22 6 1.8239 0.9546 2.4028 23 6 3.2272 0.3525 2.4986 24 6 4.2222 1.4406 2.9072 25 6 3.2330 -0.7631 3.5456 26 1 -0.3633 0.6590 -0.7885 27 1 -0.3633 -1.0124 -0.1765 28 1 -0.3634 0.3534 0.9650 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8326 2.4340 -0.1627 32 1 3.9958 0.6954 0.1822 33 1 6.7648 1.4062 -2.1395 34 1 0.2304 3.1030 2.3086 35 1 -0.3344 2.0183 1.0152 36 1 -0.0704 2.6616 -1.3431 37 1 -0.0262 4.5384 -2.9365 38 1 0.5383 6.8040 -2.1548 39 1 1.0683 7.1912 0.2185 40 1 1.0153 5.3161 1.8136 41 1 1.5576 1.4092 3.3571 42 1 1.1073 0.1695 2.1618 43 1 3.5138 -0.0567 1.5299 44 1 5.2220 1.0118 2.9750 45 1 4.2180 2.2355 2.1613 46 1 3.9356 1.8499 3.8759 47 1 2.5242 -1.5383 3.2546 48 1 4.2327 -1.1924 3.6136 49 1 2.9464 -0.3538 4.5144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169077370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:32 Heat of formation + Delta-G solvation = 20.494263 kcal Electronic energy + Delta-G solvation = -24839.072419 eV Core-core repulsion = 21765.782824 eV Total energy + Delta-G solvation = -3073.289595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.52445 -38.21661 -34.51356 -33.12176 -32.19004 -30.38207 -30.11038 -29.25351 -26.80063 -25.97961 -25.73305 -22.56788 -22.10753 -22.00898 -20.53508 -19.59773 -18.90383 -16.49103 -16.33043 -15.81330 -14.93876 -14.73860 -14.47719 -14.16810 -13.90841 -13.60640 -13.39750 -12.91384 -12.68695 -12.50511 -12.38079 -12.17805 -12.13153 -11.90405 -11.85264 -11.66270 -11.31804 -11.28054 -10.97885 -10.77178 -10.72440 -10.54692 -10.45407 -10.40537 -10.19287 -10.06085 -9.91369 -9.73009 -9.54122 -9.09861 -8.38432 -8.35870 -8.10421 -6.99345 -5.95762 -3.95395 1.88880 1.96213 3.33187 3.41076 3.45408 4.31137 4.47185 4.92828 5.13025 5.25943 5.32033 5.34236 5.39571 5.40998 5.48385 5.59026 5.66940 5.77310 5.84420 5.86770 5.91621 5.98835 6.00543 6.06271 6.10610 6.13162 6.17250 6.19071 6.23477 6.27475 6.34588 6.41065 6.48579 6.55078 6.64386 6.66252 6.75664 6.80369 6.83206 6.93779 6.95264 7.06399 7.25190 7.40665 7.51578 7.55942 7.90902 8.22950 8.35408 8.66860 9.12944 9.68020 11.14282 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.007986 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.817571 B = 3505.343506 C = 5278.946758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 N -0.520 5.520 4 C 0.194 3.806 5 C -0.498 4.498 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 C 0.085 3.915 14 H 0.073 0.927 15 C -0.078 4.078 16 C -0.058 4.058 17 C -0.078 4.078 18 C -0.122 4.122 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.142 4.142 23 C -0.111 4.111 24 C -0.143 4.143 25 C -0.142 4.142 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.002 0.998 33 H 0.258 0.742 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.050 0.950 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 2.150 8.011 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 N -0.244 5.244 4 C 0.069 3.931 5 C -0.537 4.537 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.024 4.024 14 H 0.091 0.909 15 C -0.116 4.116 16 C -0.058 4.058 17 C -0.095 4.095 18 C -0.140 4.140 19 C -0.151 4.151 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.181 4.181 23 C -0.129 4.129 24 C -0.200 4.200 25 C -0.199 4.199 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.593 2.430 7.637 13.283 hybrid contribution 0.945 -0.506 -0.489 1.178 sum -9.647 1.923 7.148 12.160 Atomic orbital electron populations 1.22049 0.97186 1.00266 1.01212 1.22230 0.93954 0.91287 1.01330 1.62254 1.22654 1.15325 1.24135 1.19869 0.81208 0.96338 0.95678 1.21222 0.92317 1.46368 0.93781 0.92077 1.24948 0.95970 0.95856 0.97835 1.69965 0.98070 1.50410 1.35424 0.86551 0.77993 0.77659 0.85861 1.19771 1.21214 1.21311 1.21741 0.96027 0.95569 0.89067 0.90905 1.20920 0.98843 0.95413 0.96433 1.19717 0.97544 0.93691 0.94851 1.21028 0.97522 0.98526 0.92473 1.21104 1.00523 0.93073 0.99303 1.20982 1.01402 0.97007 0.95667 1.20941 1.01487 0.98470 0.93780 1.20956 1.01552 0.92895 0.99123 1.22342 0.97157 0.99678 0.98920 1.21427 0.95202 0.95819 1.00426 1.21834 0.98576 0.99118 1.00488 1.21808 1.01151 0.98344 0.98631 0.92233 0.93803 0.93138 0.90580 0.94246 0.95843 0.98087 0.93222 0.92319 0.90273 0.85737 0.86824 0.87125 0.87104 0.87085 0.92856 0.90889 0.89026 0.93163 0.91825 0.93829 0.93238 0.93094 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.41 37.16 0.31 -1.88 16 2 C 0.04 0.72 4.70 -3.82 -0.02 0.70 16 3 N -0.52 -10.17 3.54 -228.07 -0.81 -10.98 16 4 C 0.19 4.76 3.62 -4.98 -0.02 4.75 16 5 C -0.50 -13.63 8.39 -34.44 -0.29 -13.92 16 6 H 0.06 1.68 7.68 -52.49 -0.40 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.09 1.43 1.66 -67.71 -0.11 1.32 16 14 H 0.07 1.38 5.47 -51.93 -0.28 1.09 16 15 C -0.08 -1.16 4.77 -27.88 -0.13 -1.29 16 16 C -0.06 -0.94 5.01 -104.63 -0.52 -1.47 16 17 C -0.08 -1.32 9.17 -39.58 -0.36 -1.68 16 18 C -0.12 -1.97 10.05 -39.59 -0.40 -2.37 16 19 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 20 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 21 C -0.13 -1.96 9.69 -39.58 -0.38 -2.34 16 22 C -0.14 -2.10 3.54 -26.73 -0.09 -2.19 16 23 C -0.11 -1.76 1.79 -90.62 -0.16 -1.92 16 24 C -0.14 -2.32 8.76 37.16 0.33 -1.99 16 25 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 26 H 0.06 0.90 7.00 -51.93 -0.36 0.54 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.67 4.87 -51.93 -0.25 0.42 16 29 H 0.08 1.56 7.10 -51.93 -0.37 1.19 16 30 H 0.04 0.68 4.01 -51.93 -0.21 0.47 16 31 H 0.02 0.65 7.49 -51.93 -0.39 0.26 16 32 H 0.00 0.04 5.36 -51.93 -0.28 -0.24 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.06 0.76 8.06 -51.93 -0.42 0.35 16 35 H 0.08 1.12 4.82 -51.93 -0.25 0.87 16 36 H 0.12 2.14 6.92 -52.49 -0.36 1.78 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.04 4.62 -51.93 -0.24 0.80 16 43 H 0.09 1.76 3.95 -51.93 -0.21 1.56 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 1.17 5.74 -51.93 -0.30 0.87 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -28.74 362.61 -10.15 -38.89 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.11 Total: 4.72 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: -2.41 Total: -29.13 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.07 Total: -36.71 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.74 -10.15 -38.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.379 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds