Wall clock time and date at job start Tue Mar 31 2020 06:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47161 * 2 1 4 4 C 1.46901 * 110.99708 * 196.16911 * 3 2 1 5 5 C 1.50700 * 109.47416 * 72.49170 * 4 3 2 6 6 H 1.07997 * 119.99722 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00138 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99980 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47205 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46974 * 120.00137 * 9 7 5 12 12 H 1.48496 * 109.47271 * 240.00167 * 9 7 5 13 13 C 1.46900 * 110.99895 * 72.21747 * 3 2 1 14 14 H 1.09002 * 109.47279 * 148.79632 * 13 3 2 15 15 C 1.53012 * 109.46709 * 268.79128 * 13 3 2 16 16 C 1.50693 * 109.47120 * 293.83902 * 15 13 3 17 17 C 1.38239 * 120.00164 * 86.26261 * 16 15 13 18 18 C 1.38232 * 120.00110 * 179.97438 * 17 16 15 19 19 C 1.38229 * 120.00168 * 359.97438 * 18 17 16 20 20 C 1.38235 * 120.00166 * 0.27980 * 19 18 17 21 21 C 1.38232 * 119.99501 * 359.51359 * 20 19 18 22 22 C 1.52994 * 109.47200 * 28.78926 * 13 3 2 23 23 C 1.53001 * 109.46989 * 65.91190 * 22 13 3 24 24 C 1.52996 * 109.47244 * 62.87801 * 23 22 13 25 25 C 1.53003 * 109.46783 * 182.87560 * 23 22 13 26 26 H 1.09001 * 109.47008 * 50.11104 * 1 2 3 27 27 H 1.09003 * 109.46901 * 170.10927 * 1 2 3 28 28 H 1.08999 * 109.47246 * 290.11224 * 1 2 3 29 29 H 1.08998 * 109.46863 * 239.99698 * 2 1 3 30 30 H 1.09003 * 109.47226 * 120.00210 * 2 1 3 31 31 H 1.09005 * 109.46641 * 192.49248 * 4 3 2 32 32 H 1.09003 * 109.47320 * 312.48539 * 4 3 2 33 33 H 0.97002 * 119.99720 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46661 * 173.84257 * 15 13 3 35 35 H 1.09002 * 109.47026 * 53.83892 * 15 13 3 36 36 H 1.08000 * 119.99707 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.99654 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.99837 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.00344 * 179.72333 * 20 19 18 40 40 H 1.08006 * 120.00179 * 180.27859 * 21 20 19 41 41 H 1.09003 * 109.46775 * 185.91041 * 22 13 3 42 42 H 1.08998 * 109.47333 * 305.90870 * 22 13 3 43 43 H 1.08994 * 109.47144 * 302.87541 * 23 22 13 44 44 H 1.09000 * 109.47737 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.47112 * 300.00224 * 24 23 22 46 46 H 1.09003 * 109.47544 * 59.99865 * 24 23 22 47 47 H 1.08997 * 109.47380 * 60.00325 * 25 23 22 48 48 H 1.09005 * 109.46889 * 179.97438 * 25 23 22 49 49 H 1.09003 * 109.47166 * 299.99621 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4370 1.4422 -0.3819 5 6 3.5717 1.1623 -1.8566 6 1 2.6924 0.9615 -2.4505 7 6 4.8174 1.1624 -2.4474 8 7 5.8883 1.4064 -1.7239 9 14 4.9844 0.8148 -4.2750 10 1 3.6401 0.5725 -4.8577 11 1 5.6110 1.9821 -4.9458 12 1 5.8346 -0.3862 -4.4749 13 6 1.8003 2.0209 1.3059 14 1 2.5882 2.7508 1.4916 15 6 0.4419 2.7252 1.3084 16 6 0.4697 3.8736 0.3331 17 6 0.1775 3.6553 -1.0003 18 6 0.2025 4.7089 -1.8948 19 6 0.5192 5.9809 -1.4560 20 6 0.8165 6.1983 -0.1236 21 6 0.7873 5.1455 0.7717 22 6 1.8239 0.9546 2.4028 23 6 3.2272 0.3525 2.4986 24 6 4.2222 1.4406 2.9072 25 6 3.2330 -0.7631 3.5456 26 1 -0.3633 0.6590 -0.7885 27 1 -0.3633 -1.0124 -0.1765 28 1 -0.3634 0.3534 0.9650 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.8326 2.4340 -0.1627 32 1 3.9958 0.6954 0.1822 33 1 6.7648 1.4062 -2.1395 34 1 0.2304 3.1030 2.3086 35 1 -0.3344 2.0183 1.0152 36 1 -0.0704 2.6616 -1.3431 37 1 -0.0262 4.5384 -2.9365 38 1 0.5383 6.8040 -2.1548 39 1 1.0683 7.1912 0.2185 40 1 1.0153 5.3161 1.8136 41 1 1.5576 1.4092 3.3571 42 1 1.1073 0.1695 2.1618 43 1 3.5138 -0.0567 1.5299 44 1 5.2220 1.0118 2.9750 45 1 4.2180 2.2355 2.1613 46 1 3.9356 1.8499 3.8759 47 1 2.5242 -1.5383 3.2546 48 1 4.2327 -1.1924 3.6136 49 1 2.9464 -0.3538 4.5144 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169077370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:31 Heat of formation + Delta-G solvation = 6.941912 kcal Electronic energy + Delta-G solvation = -24839.660093 eV Core-core repulsion = 21765.782824 eV Total energy + Delta-G solvation = -3073.877269 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88017 -39.47613 -35.92019 -34.93526 -33.72172 -31.71695 -31.50585 -30.65473 -28.02779 -27.77801 -27.04858 -24.04913 -23.79679 -23.23442 -21.85629 -20.90893 -20.31028 -18.40275 -17.65177 -17.28033 -16.62724 -16.23506 -15.83373 -15.49686 -15.32692 -15.03448 -14.68946 -14.21755 -14.08520 -14.04464 -13.82196 -13.66091 -13.41522 -13.27266 -13.07679 -12.99997 -12.88910 -12.80416 -12.49626 -12.32798 -12.24476 -12.01795 -11.91863 -11.75741 -11.65623 -11.47063 -11.35740 -11.29927 -11.00880 -10.86988 -10.54080 -9.60554 -9.34090 -8.61400 -8.12410 -6.20688 0.67261 0.73992 1.36792 1.38365 1.50530 2.41417 3.08320 3.18089 3.45900 3.87182 4.01452 4.09814 4.16668 4.21810 4.32838 4.35648 4.42664 4.48283 4.59435 4.64522 4.68623 4.74524 4.80266 4.82621 4.88596 4.89711 4.95833 4.96612 5.00808 5.06327 5.12471 5.14050 5.21052 5.26304 5.31788 5.34585 5.40266 5.45542 5.50167 5.55169 5.63919 5.67645 5.75167 5.76938 5.83265 6.01674 6.21916 6.36069 6.60343 6.89019 6.99155 7.47853 8.95883 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.007986 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.817571 B = 3505.343506 C = 5278.946758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.041 3.959 3 N -0.521 5.521 4 C 0.219 3.781 5 C -0.508 4.508 6 H 0.055 0.945 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.955 3.045 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.087 3.913 14 H 0.047 0.953 15 C -0.071 4.071 16 C -0.073 4.073 17 C -0.099 4.099 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.134 4.134 23 C -0.111 4.111 24 C -0.138 4.138 25 C -0.135 4.135 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.048 0.952 31 H -0.017 1.017 32 H -0.017 1.017 33 H 0.259 0.741 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.039 0.961 45 H 0.031 0.969 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.046 0.954 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 2.160 9.159 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 N -0.244 5.244 4 C 0.093 3.907 5 C -0.547 4.547 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.781 3.219 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.206 1.206 13 C -0.022 4.022 14 H 0.065 0.935 15 C -0.108 4.108 16 C -0.073 4.073 17 C -0.117 4.117 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.172 4.172 23 C -0.129 4.129 24 C -0.195 4.195 25 C -0.193 4.193 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.001 0.999 32 H 0.000 1.000 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.405 2.433 8.789 15.396 hybrid contribution 1.518 -0.464 -0.821 1.788 sum -10.886 1.969 7.968 13.634 Atomic orbital electron populations 1.21949 0.94029 1.01513 1.02120 1.22243 0.96357 0.89982 1.00124 1.62185 1.19071 1.16650 1.26538 1.19371 0.84045 0.93149 0.94142 1.21547 0.92142 1.45745 0.95270 0.92677 1.25765 0.95731 0.95787 1.02255 1.70093 0.98501 1.51578 1.37258 0.85543 0.78198 0.77567 0.80585 1.18979 1.20951 1.20604 1.21752 0.96580 0.95606 0.88297 0.93482 1.20891 0.97330 0.94984 0.97597 1.19952 0.97746 0.94716 0.94879 1.21114 0.98804 0.98433 0.93352 1.21352 1.01014 0.93637 0.99829 1.21308 1.00830 0.97223 0.96494 1.21326 1.00604 0.99661 0.93651 1.21280 1.01121 0.92744 1.00360 1.22272 0.96479 0.99199 0.99257 1.21356 0.95777 0.96470 0.99305 1.21779 0.98473 0.98403 1.00869 1.21743 1.01371 0.97526 0.98613 0.92989 0.91831 0.91085 0.93908 0.93408 0.99881 0.99990 0.93178 0.89658 0.89368 0.86693 0.86024 0.84934 0.84558 0.85165 0.90144 0.89770 0.93066 0.94179 0.94964 0.91074 0.92283 0.93521 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.41 71.98 0.61 -3.21 16 2 C 0.04 1.47 4.70 86.30 0.41 1.88 16 3 N -0.52 -20.92 3.54 -875.49 -3.10 -24.02 16 4 C 0.22 11.38 3.62 85.56 0.31 11.69 16 5 C -0.51 -28.97 8.39 25.60 0.21 -28.75 16 6 H 0.05 3.14 7.68 -2.91 -0.02 3.11 16 7 C 0.00 0.11 5.46 84.65 0.46 0.57 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.09 2.87 1.66 44.92 0.07 2.95 16 14 H 0.05 1.82 5.47 -2.39 -0.01 1.81 16 15 C -0.07 -1.96 4.77 29.85 0.14 -1.82 16 16 C -0.07 -2.32 5.01 -19.87 -0.10 -2.42 16 17 C -0.10 -3.39 9.17 22.27 0.20 -3.19 16 18 C -0.14 -4.55 10.05 22.27 0.22 -4.32 16 19 C -0.14 -4.13 10.05 22.27 0.22 -3.90 16 20 C -0.13 -3.80 10.05 22.27 0.22 -3.57 16 21 C -0.14 -4.04 9.69 22.27 0.22 -3.82 16 22 C -0.13 -3.67 3.54 30.59 0.11 -3.56 16 23 C -0.11 -3.47 1.79 -10.79 -0.02 -3.49 16 24 C -0.14 -4.53 8.76 71.98 0.63 -3.90 16 25 C -0.14 -3.35 9.19 71.98 0.66 -2.69 16 26 H 0.05 1.52 7.00 -2.39 -0.02 1.50 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.66 4.87 -2.39 -0.01 1.65 16 29 H 0.04 1.81 7.10 -2.39 -0.02 1.79 16 30 H 0.05 1.64 4.01 -2.39 -0.01 1.63 16 31 H -0.02 -1.00 7.49 -2.38 -0.02 -1.02 16 32 H -0.02 -0.96 5.36 -2.39 -0.01 -0.97 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.08 1.93 8.06 -2.39 -0.02 1.91 16 35 H 0.09 2.28 4.82 -2.39 -0.01 2.27 16 36 H 0.12 4.04 6.92 -2.91 -0.02 4.02 16 37 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 38 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 2.15 4.62 -2.39 -0.01 2.14 16 43 H 0.05 2.04 3.95 -2.39 -0.01 2.03 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.03 1.24 5.74 -2.38 -0.01 1.23 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.12 362.61 4.71 -60.41 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.91 Total: 24.21 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 4.59 Total: -51.57 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.82 Total: -80.71 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -65.12 4.71 -60.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.353 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds