Wall clock time and date at job start Tue Mar 31 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47446 * 2 1 4 4 C 1.53000 * 109.47067 * 120.00055 * 2 1 3 5 5 C 1.53003 * 109.47516 * 175.17244 * 4 2 1 6 6 C 1.52996 * 109.46975 * 185.37096 * 5 4 2 7 7 C 1.53008 * 109.47040 * 177.02471 * 6 5 4 8 8 H 1.08999 * 109.47096 * 301.54523 * 7 6 5 9 9 C 1.52998 * 109.47458 * 181.54114 * 7 6 5 10 10 N 1.46503 * 109.46912 * 61.54250 * 7 6 5 11 11 C 1.36942 * 119.99795 * 62.57956 * 10 7 6 12 12 H 1.08006 * 119.99769 * 38.06311 * 11 10 7 13 13 C 1.38806 * 119.99961 * 218.05453 * 11 10 7 14 14 N 1.31621 * 120.00050 * 212.87146 * 13 11 10 15 15 Si 1.86800 * 120.00224 * 32.88178 * 13 11 10 16 16 H 1.48500 * 109.47553 * 90.27577 * 15 13 11 17 17 H 1.48501 * 109.47303 * 210.27703 * 15 13 11 18 18 H 1.48505 * 109.46927 * 330.27657 * 15 13 11 19 19 C 1.46500 * 120.00223 * 242.58622 * 10 7 6 20 20 C 1.50703 * 109.46928 * 276.56311 * 19 10 7 21 21 C 1.38232 * 120.00347 * 269.73047 * 20 19 10 22 22 C 1.38230 * 119.99968 * 179.76617 * 21 20 19 23 23 C 1.38235 * 119.99985 * 0.50447 * 22 21 20 24 24 C 1.38230 * 119.99946 * 359.74468 * 23 22 21 25 25 C 1.38227 * 120.00410 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47263 * 300.00115 * 1 2 3 27 27 H 1.09005 * 109.46960 * 60.00206 * 1 2 3 28 28 H 1.08997 * 109.47394 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47541 * 239.99629 * 2 1 3 30 30 H 1.08996 * 109.47084 * 63.28884 * 3 2 1 31 31 H 1.08998 * 109.46893 * 183.28846 * 3 2 1 32 32 H 1.08996 * 109.46877 * 303.28843 * 3 2 1 33 33 H 1.09007 * 109.47307 * 55.17092 * 4 2 1 34 34 H 1.09000 * 109.46800 * 295.17232 * 4 2 1 35 35 H 1.09003 * 109.46955 * 65.37320 * 5 4 2 36 36 H 1.08989 * 109.47011 * 305.37588 * 5 4 2 37 37 H 1.09001 * 109.47323 * 57.03034 * 6 5 4 38 38 H 1.09000 * 109.47832 * 297.02318 * 6 5 4 39 39 H 1.08995 * 109.47168 * 305.47206 * 9 7 6 40 40 H 1.09004 * 109.46965 * 65.46899 * 9 7 6 41 41 H 1.09000 * 109.47263 * 185.46645 * 9 7 6 42 42 H 0.97003 * 119.99970 * 179.97438 * 14 13 11 43 43 H 1.09003 * 109.47260 * 156.56701 * 19 10 7 44 44 H 1.08997 * 109.47047 * 36.56568 * 19 10 7 45 45 H 1.08004 * 119.99536 * 359.97438 * 21 20 19 46 46 H 1.08006 * 119.99874 * 180.22729 * 22 21 20 47 47 H 1.08002 * 119.99549 * 179.72339 * 23 22 21 48 48 H 1.08003 * 119.99684 * 179.97438 * 24 23 22 49 49 H 1.08000 * 120.00738 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5651 -0.8273 1.1901 6 6 4.0642 -1.6640 2.3698 7 6 5.5817 -1.8323 2.2698 8 1 5.8326 -2.3115 1.3235 9 6 6.0760 -2.7010 3.4282 10 7 6.2244 -0.5174 2.3368 11 6 6.0947 0.2515 3.4625 12 1 6.1046 -0.2128 4.4376 13 6 5.9508 1.6275 3.3503 14 7 6.4498 2.4190 4.2760 15 14 5.0488 2.3560 1.8858 16 1 3.6052 2.4870 2.2086 17 1 5.6100 3.6953 1.5749 18 1 5.2140 1.4649 0.7094 19 6 7.0055 -0.0251 1.1994 20 6 8.4018 -0.5878 1.2678 21 6 9.3924 0.1009 1.9426 22 6 10.6719 -0.4178 2.0094 23 6 10.9636 -1.6200 1.3925 24 6 9.9743 -2.3061 0.7134 25 6 8.6936 -1.7899 0.6505 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.7257 1.9390 0.9180 31 1 3.1284 1.4429 -0.0589 32 1 1.6294 1.9730 -0.8590 33 1 1.6077 -1.7210 1.2936 34 1 1.7489 -0.1599 2.1371 35 1 4.0010 0.1704 1.2421 36 1 3.8602 -1.3044 0.2557 37 1 3.5878 -2.6441 2.3475 38 1 3.8154 -1.1601 3.3038 39 1 5.7411 -2.2722 4.3726 40 1 5.6739 -3.7088 3.3239 41 1 7.1652 -2.7411 3.4133 42 1 6.3496 3.3806 4.1974 43 1 7.0505 1.0635 1.2334 44 1 6.5318 -0.3402 0.2697 45 1 9.1656 1.0425 2.4205 46 1 11.4450 0.1186 2.5398 47 1 11.9644 -2.0229 1.4410 48 1 10.2023 -3.2452 0.2311 49 1 7.9207 -2.3258 0.1195 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170087679.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:56 Heat of formation + Delta-G solvation = 17.465606 kcal Electronic energy + Delta-G solvation = -24382.912117 eV Core-core repulsion = 21309.491190 eV Total energy + Delta-G solvation = -3073.420928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 289.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.75245 -37.39749 -36.10665 -33.00786 -31.79242 -30.67112 -30.27827 -29.12126 -27.03993 -25.76653 -25.48291 -23.40161 -21.90285 -21.42625 -20.59090 -19.79333 -19.22019 -16.73109 -15.90823 -15.58746 -15.17368 -14.78173 -14.55698 -14.21950 -13.91093 -13.72846 -13.27956 -13.20235 -12.83729 -12.66632 -12.43983 -12.24830 -12.15419 -12.10235 -11.82823 -11.54635 -11.46125 -11.25126 -11.02168 -10.87719 -10.67632 -10.60334 -10.50433 -10.26693 -10.20974 -10.11262 -9.98828 -9.75956 -9.59861 -9.21265 -8.41780 -8.32494 -8.07384 -6.76859 -6.06579 -3.34325 1.96979 2.01474 3.35270 3.47021 3.49973 4.35771 4.54205 4.99154 5.07933 5.10128 5.16487 5.29573 5.41256 5.45373 5.56512 5.62483 5.70002 5.74431 5.78237 5.86736 5.89466 5.99508 6.02495 6.04628 6.06950 6.13892 6.21396 6.26328 6.30539 6.31628 6.38543 6.43025 6.52721 6.55532 6.59450 6.63393 6.66481 6.67967 6.76843 6.86563 7.01713 7.06448 7.10575 7.16076 7.18390 7.41754 7.64409 8.03307 8.44064 9.01991 9.73393 10.18031 11.08389 Molecular weight = 289.21amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.005572 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.228725 B = 5023.488994 C = 5646.089155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.155 4.155 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.122 4.122 7 C 0.173 3.827 8 H 0.048 0.952 9 C -0.152 4.152 10 N -0.584 5.584 11 C -0.263 4.263 12 H 0.075 0.925 13 C 0.045 3.955 14 N -0.881 5.881 15 Si 0.843 3.157 16 H -0.283 1.283 17 H -0.304 1.304 18 H -0.256 1.256 19 C 0.181 3.819 20 C -0.078 4.078 21 C -0.094 4.094 22 C -0.125 4.125 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.120 4.120 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.048 0.952 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.124 0.876 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 -7.095 -8.365 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.212 4.212 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.161 4.161 7 C 0.066 3.934 8 H 0.066 0.934 9 C -0.210 4.210 10 N -0.305 5.305 11 C -0.391 4.391 12 H 0.093 0.907 13 C -0.157 4.157 14 N -0.520 5.520 15 Si 0.672 3.328 16 H -0.210 1.210 17 H -0.232 1.232 18 H -0.181 1.181 19 C 0.055 3.945 20 C -0.081 4.081 21 C -0.113 4.113 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.148 4.148 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.332 -6.913 -8.263 11.023 hybrid contribution -0.464 0.574 -0.592 0.946 sum -2.796 -6.339 -8.855 11.243 Atomic orbital electron populations 1.21841 0.95840 1.01219 1.01366 1.21123 0.95036 0.96465 0.98803 1.22042 1.01755 0.96080 1.01332 1.21676 0.96812 0.99461 0.97182 1.21734 0.93967 1.02428 0.97803 1.21937 0.97081 0.97920 0.99200 1.20417 0.90664 0.86551 0.95740 0.93410 1.22091 1.00769 0.97530 1.00652 1.44093 1.53749 1.16670 1.15997 1.18554 1.46461 0.88161 0.85910 0.90735 1.25490 0.98026 0.96228 0.95916 1.70065 1.41570 1.03784 1.36608 0.87649 0.82047 0.77639 0.85488 1.20992 1.23156 1.18141 1.20307 0.86112 0.97660 0.90408 1.21053 0.97522 0.94646 0.94895 1.21171 0.92153 1.00503 0.97462 1.21099 0.96974 0.96275 1.00006 1.20924 0.98643 0.96171 1.00143 1.20956 0.93755 0.99503 1.00629 1.20956 0.96016 0.96227 1.00679 0.92842 0.93177 0.92984 0.91655 0.92614 0.92233 0.93312 0.92695 0.92213 0.90176 0.93597 0.93821 0.91197 0.92510 0.94551 0.93264 0.92859 0.91823 0.94039 0.85767 0.86991 0.87298 0.87278 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 37.15 0.34 -1.37 16 2 C -0.10 -1.34 2.92 -90.62 -0.26 -1.61 16 3 C -0.15 -2.42 8.65 37.16 0.32 -2.10 16 4 C -0.11 -1.75 4.68 -26.73 -0.13 -1.88 16 5 C -0.12 -2.14 4.64 -26.73 -0.12 -2.27 16 6 C -0.12 -2.19 4.62 -26.73 -0.12 -2.32 16 7 C 0.17 3.27 2.78 -67.93 -0.19 3.08 16 8 H 0.05 0.85 7.90 -51.93 -0.41 0.44 16 9 C -0.15 -2.78 8.99 37.16 0.33 -2.44 16 10 N -0.58 -12.78 1.35 -167.02 -0.23 -13.01 16 11 C -0.26 -6.80 8.57 -15.06 -0.13 -6.92 16 12 H 0.08 2.14 7.05 -52.48 -0.37 1.77 16 13 C 0.04 1.22 5.00 -17.43 -0.09 1.13 16 14 N -0.88 -25.62 13.97 55.49 0.78 -24.85 16 15 Si 0.84 20.44 21.91 -169.99 -3.72 16.72 16 16 H -0.28 -6.89 6.90 56.52 0.39 -6.50 16 17 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 18 H -0.26 -5.76 4.63 56.52 0.26 -5.49 16 19 C 0.18 3.78 3.89 -5.19 -0.02 3.76 16 20 C -0.08 -1.53 5.45 -104.62 -0.57 -2.10 16 21 C -0.09 -1.86 9.70 -39.59 -0.38 -2.24 16 22 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 23 C -0.14 -2.17 10.05 -39.59 -0.40 -2.57 16 24 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 25 C -0.12 -2.05 9.70 -39.58 -0.38 -2.43 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.05 0.92 7.93 -51.93 -0.41 0.51 16 31 H 0.06 1.04 4.85 -51.93 -0.25 0.79 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.62 2.14 -51.93 -0.11 1.51 16 36 H 0.05 0.76 8.14 -51.94 -0.42 0.33 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.41 7.67 -51.93 -0.40 1.01 16 39 H 0.06 1.12 7.18 -51.93 -0.37 0.75 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.06 1.45 4.65 -51.93 -0.24 1.21 16 44 H 0.04 0.81 7.99 -51.93 -0.42 0.39 16 45 H 0.12 2.68 8.06 -52.48 -0.42 2.26 16 46 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 47 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 48 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 49 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -27.48 370.32 -9.23 -36.71 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -9.03 Total: 6.06 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.60 Total: -27.22 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.55 Total: -37.85 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -3.72 Total: 16.72 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.48 -9.23 -36.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170087679.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.174 kcal (2) G-P(sol) polarization free energy of solvation -27.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds